data_6F3C # _entry.id 6F3C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6F3C pdb_00006f3c 10.2210/pdb6f3c/pdb WWPDB D_1200007649 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-29 2 'Structure model' 1 1 2019-06-05 3 'Structure model' 1 2 2019-08-07 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_proc 4 2 'Structure model' pdbx_seq_map_depositor_info 5 3 'Structure model' citation 6 3 'Structure model' citation_author 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_initial_refinement_model 11 4 'Structure model' pdbx_struct_conn_angle 12 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation_author.identifier_ORCID' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 4 'Structure model' '_pdbx_struct_conn_angle.value' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 4 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6F3C _pdbx_database_status.recvd_initial_deposition_date 2017-11-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ferraroni, M.' 1 ? 'Bazzicalupi, C.' 2 ? 'Gratteri, P.' 3 ? 'Papi, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 58 _citation.language ? _citation.page_first 9378 _citation.page_last 9382 _citation.title ;Induction of a Four-Way Junction Structure in the DNA Palindromic Hexanucleotide 5'-d(CGTACG)-3' by a Mononuclear Platinum Complex. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201814532 _citation.pdbx_database_id_PubMed 31046177 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Rixel, V.H.S.' 1 ? primary 'Busemann, A.' 2 ? primary 'Wissingh, M.F.' 3 ? primary 'Hopkins, S.L.' 4 ? primary 'Siewert, B.' 5 ? primary 'van de Griend, C.' 6 ? primary 'Siegler, M.A.' 7 ? primary 'Marzo, T.' 8 ? primary 'Papi, F.' 9 ? primary 'Ferraroni, M.' 10 ? primary 'Gratteri, P.' 11 ? primary 'Bazzicalupi, C.' 12 ? primary 'Messori, L.' 13 ? primary 'Bonnet, S.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*G)-3') ; 1809.217 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*G)-3') ; 1520.036 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn '[Pt(H2bapbpy)] platinum' 535.459 2 ? ? ? ? 5 water nat water 18.015 9 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DA)(DC)(DG)' CGTACG B,D ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DG)' GTACG C,A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 '[Pt(H2bapbpy)] platinum' PT9 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 2 1 DG n 2 2 DT n 2 3 DA n 2 4 DC n 2 5 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 6 'synthetic construct' ? 32630 ? 2 1 sample 1 5 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PT9 non-polymer . '[Pt(H2bapbpy)] platinum' ? 'C20 H16 N6 Pt' 535.459 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 7 7 DC DC B . n A 1 2 DG 2 8 8 DG DG B . n A 1 3 DT 3 9 9 DT DT B . n A 1 4 DA 4 10 10 DA DA B . n A 1 5 DC 5 11 11 DC DC B . n A 1 6 DG 6 12 12 DG DG B . n B 1 1 DC 1 7 7 DC DC D . n B 1 2 DG 2 8 8 DG DG D . n B 1 3 DT 3 9 9 DT DT D . n B 1 4 DA 4 10 10 DA DA D . n B 1 5 DC 5 11 11 DC DC D . n B 1 6 DG 6 12 12 DG DG D . n C 2 1 DG 1 2 2 DG DG C . n C 2 2 DT 2 3 3 DT DT C . n C 2 3 DA 3 4 4 DA DA C . n C 2 4 DC 4 5 5 DC DC C . n C 2 5 DG 5 6 6 DG DG C . n D 2 1 DG 1 2 2 DG DG A . n D 2 2 DT 2 3 3 DT DT A . n D 2 3 DA 3 4 4 DA DA A . n D 2 4 DC 4 5 5 DC DC A . n D 2 5 DG 5 6 6 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 101 1 MG MG B . F 4 PT9 1 101 1 PT9 PTB A . G 4 PT9 1 102 2 PT9 PTB A . H 5 HOH 1 201 2 HOH HOH B . H 5 HOH 2 202 1 HOH HOH B . H 5 HOH 3 203 10 HOH HOH B . H 5 HOH 4 204 9 HOH HOH B . I 5 HOH 1 101 3 HOH HOH C . I 5 HOH 2 102 4 HOH HOH C . J 5 HOH 1 201 6 HOH HOH A . J 5 HOH 2 202 7 HOH HOH A . J 5 HOH 3 203 5 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6F3C _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.090 _cell.length_a_esd ? _cell.length_b 30.090 _cell.length_b_esd ? _cell.length_c 116.990 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6F3C _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Strontium chloride, Magnesium chloride, Sodium Cacodylate, MPD, spermine chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97264 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID30B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97264 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID30B _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 67.610 _reflns.entry_id 6F3C _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.290 _reflns.d_resolution_low 39.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3083 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 16.101 _reflns.pdbx_Rmerge_I_obs 0.164 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.350 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.032 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.170 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.290 2.430 ? 1.090 ? ? ? ? 469 98.500 ? ? ? ? 1.527 ? ? ? ? ? ? ? ? 14.985 ? ? ? ? 1.579 ? ? 1 1 0.326 ? 2.430 2.600 ? 1.850 ? ? ? ? 449 99.800 ? ? ? ? 1.194 ? ? ? ? ? ? ? ? 17.719 ? ? ? ? 1.230 ? ? 2 1 0.299 ? 2.600 2.810 ? 2.620 ? ? ? ? 423 100.000 ? ? ? ? 0.982 ? ? ? ? ? ? ? ? 17.097 ? ? ? ? 1.013 ? ? 3 1 0.697 ? 2.810 3.070 ? 6.050 ? ? ? ? 404 100.000 ? ? ? ? 0.604 ? ? ? ? ? ? ? ? 15.950 ? ? ? ? 0.624 ? ? 4 1 0.952 ? 3.070 3.430 ? 15.750 ? ? ? ? 357 100.000 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 17.039 ? ? ? ? 0.145 ? ? 5 1 0.997 ? 3.430 3.960 ? 19.610 ? ? ? ? 316 100.000 ? ? ? ? 0.156 ? ? ? ? ? ? ? ? 17.101 ? ? ? ? 0.160 ? ? 6 1 0.997 ? 3.960 4.840 ? 21.030 ? ? ? ? 287 100.000 ? ? ? ? 0.139 ? ? ? ? ? ? ? ? 14.690 ? ? ? ? 0.144 ? ? 7 1 0.994 ? 4.840 6.790 ? 24.440 ? ? ? ? 233 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 15.150 ? ? ? ? 0.123 ? ? 8 1 0.996 ? 6.790 39.000 ? 23.850 ? ? ? ? 145 98.000 ? ? ? ? 0.113 ? ? ? ? ? ? ? ? 12.034 ? ? ? ? 0.119 ? ? 9 1 0.989 ? # _refine.aniso_B[1][1] -4.5600 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -4.5600 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 9.1100 _refine.B_iso_max 140.430 _refine.B_iso_mean 58.2680 _refine.B_iso_min 21.700 _refine.correlation_coeff_Fo_to_Fc 0.9430 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.details 'U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6F3C _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 39.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2732 _refine.ls_number_reflns_R_free 347 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5800 _refine.ls_percent_reflns_R_free 11.3000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2610 _refine.ls_R_factor_R_free 0.2923 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2573 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3NP6 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1080 _refine.pdbx_overall_ESU_R_Free 0.0620 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.0480 _refine.overall_SU_ML 0.1730 _refine.overall_SU_R_Cruickshank_DPI 0.1077 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 39.0000 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 506 _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_B_iso_mean_ligand 40.51 _refine_hist.pdbx_B_iso_mean_solvent 54.17 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 442 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.020 0.012 562 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.781 1.372 860 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.100 0.200 66 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.017 0.020 296 ? r_gen_planes_refined ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.2950 _refine_ls_shell.d_res_low 2.3540 _refine_ls_shell.number_reflns_all 217 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_R_work 189 _refine_ls_shell.percent_reflns_obs 97.3100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.8650 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.6890 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6F3C _struct.title 'The cytotoxic [Pt(H2bapbpy)] platinum complex interacting with the CGTACG hexamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6F3C _struct_keywords.text 'DRUG-DNA COMPLEX, four-way junction, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6F3C 6F3C ? 1 ? 1 2 PDB 6F3C 6F3C ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6F3C B 1 ? 6 ? 6F3C 7 ? 12 ? 7 12 2 1 6F3C D 1 ? 6 ? 6F3C 7 ? 12 ? 7 12 3 2 6F3C C 1 ? 5 ? 6F3C 2 ? 6 ? 2 6 4 2 6F3C A 1 ? 5 ? 6F3C 2 ? 6 ? 2 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2150 ? 1 MORE 1 ? 1 'SSA (A^2)' 4140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 OP1 ? ? ? 1_555 E MG . MG ? ? B DG 12 B MG 101 1_555 ? ? ? ? ? ? ? 2.631 ? ? metalc2 metalc ? ? A DG 6 OP2 ? ? ? 1_555 E MG . MG ? ? B DG 12 B MG 101 4_555 ? ? ? ? ? ? ? 2.112 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 201 4_555 ? ? ? ? ? ? ? 2.289 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 B DG 6 OP1 ? ? B MG 101 D DG 12 1_555 ? ? ? ? ? ? ? 2.046 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 D DC 4 N3 ? ? B DG 8 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DC 4 O2 ? ? B DG 8 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 D DC 4 N4 ? ? B DG 8 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 D DA 3 N1 ? ? B DT 9 A DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 D DA 3 N6 ? ? B DT 9 A DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 D DT 2 N3 ? ? B DA 10 A DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 D DT 2 O4 ? ? B DA 10 A DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 D DG 1 N1 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 D DG 1 O6 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 D DG 1 N2 ? ? B DC 11 A DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N3 ? ? ? 1_555 C DG 1 N2 ? ? B DG 12 C DG 2 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 4 N3 ? ? D DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 4 O2 ? ? D DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 4 N4 ? ? D DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 3 N1 ? ? D DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 3 N6 ? ? D DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? D DA 10 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? D DA 10 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? D DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? D DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? D DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 6 N3 ? ? ? 1_555 D DG 1 N2 ? ? D DG 12 A DG 2 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP2 ? A DG 6 ? B DG 12 ? 1_555 17.0 ? 2 OP1 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 201 ? 4_555 69.0 ? 3 OP2 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 201 ? 4_555 69.2 ? 4 OP1 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 202 ? 1_555 57.0 ? 5 OP2 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 202 ? 1_555 70.8 ? 6 O ? H HOH . ? B HOH 201 ? 4_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 202 ? 1_555 108.5 ? 7 OP1 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP1 ? B DG 6 ? D DG 12 ? 1_555 89.9 ? 8 OP2 ? A DG 6 ? B DG 12 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP1 ? B DG 6 ? D DG 12 ? 1_555 105.1 ? 9 O ? H HOH . ? B HOH 201 ? 4_555 MG ? E MG . ? B MG 101 ? 1_555 OP1 ? B DG 6 ? D DG 12 ? 1_555 68.0 ? 10 O ? H HOH . ? B HOH 202 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 OP1 ? B DG 6 ? D DG 12 ? 1_555 68.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 5 'binding site for residue MG B 101' AC2 Software A PT9 101 ? 10 'binding site for residue PT9 A 101' AC3 Software A PT9 102 ? 7 'binding site for residue PT9 A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 6 ? DG B 12 . ? 4_555 ? 2 AC1 5 DG A 6 ? DG B 12 . ? 1_555 ? 3 AC1 5 HOH H . ? HOH B 201 . ? 4_555 ? 4 AC1 5 HOH H . ? HOH B 202 . ? 1_555 ? 5 AC1 5 DG B 6 ? DG D 12 . ? 1_555 ? 6 AC2 10 DC D 4 ? DC A 5 . ? 1_555 ? 7 AC2 10 DG D 5 ? DG A 6 . ? 1_555 ? 8 AC2 10 PT9 G . ? PT9 A 102 . ? 1_555 ? 9 AC2 10 HOH J . ? HOH A 201 . ? 1_555 ? 10 AC2 10 DC A 1 ? DC B 7 . ? 5_555 ? 11 AC2 10 DG A 2 ? DG B 8 . ? 1_555 ? 12 AC2 10 DC C 4 ? DC C 5 . ? 1_445 ? 13 AC2 10 DG C 5 ? DG C 6 . ? 1_445 ? 14 AC2 10 DC B 1 ? DC D 7 . ? 5_565 ? 15 AC2 10 DG B 2 ? DG D 8 . ? 1_445 ? 16 AC3 7 DC D 4 ? DC A 5 . ? 1_555 ? 17 AC3 7 DG D 5 ? DG A 6 . ? 1_555 ? 18 AC3 7 PT9 F . ? PT9 A 101 . ? 1_555 ? 19 AC3 7 DG A 2 ? DG B 8 . ? 1_555 ? 20 AC3 7 DC C 4 ? DC C 5 . ? 1_445 ? 21 AC3 7 DC B 1 ? DC D 7 . ? 5_565 ? 22 AC3 7 DG B 2 ? DG D 8 . ? 1_445 ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 204 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 PT9 C2 C Y N 148 PT9 N3 N Y N 149 PT9 N4 N Y N 150 PT9 C5 C Y N 151 PT9 C6 C Y N 152 PT9 C7 C Y N 153 PT9 C8 C Y N 154 PT9 C9 C Y N 155 PT9 PT1 PT N N 156 PT9 C1 C Y N 157 PT9 C3 C Y N 158 PT9 C4 C Y N 159 PT9 C10 C Y N 160 PT9 C11 C Y N 161 PT9 C12 C Y N 162 PT9 C13 C Y N 163 PT9 C14 C Y N 164 PT9 C15 C Y N 165 PT9 C16 C Y N 166 PT9 C17 C Y N 167 PT9 C18 C Y N 168 PT9 C19 C Y N 169 PT9 C20 C Y N 170 PT9 N1 N Y N 171 PT9 N2 N N N 172 PT9 N5 N N N 173 PT9 N6 N Y N 174 PT9 H1 H N N 175 PT9 H2 H N N 176 PT9 H3 H N N 177 PT9 H4 H N N 178 PT9 H5 H N N 179 PT9 H6 H N N 180 PT9 H7 H N N 181 PT9 H8 H N N 182 PT9 H9 H N N 183 PT9 H10 H N N 184 PT9 H11 H N N 185 PT9 H12 H N N 186 PT9 H13 H N N 187 PT9 H14 H N N 188 PT9 H15 H N N 189 PT9 H16 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 PT9 C8 C9 doub Y N 152 PT9 C8 C7 sing Y N 153 PT9 C9 C10 sing Y N 154 PT9 C7 C6 doub Y N 155 PT9 C12 C13 doub Y N 156 PT9 C12 C11 sing Y N 157 PT9 C10 C11 sing N N 158 PT9 C10 N3 doub Y N 159 PT9 C13 C14 sing Y N 160 PT9 C11 N4 doub Y N 161 PT9 C6 N3 sing Y N 162 PT9 C6 N2 sing N N 163 PT9 N3 PT1 sing N N 164 PT9 N2 C5 sing N N 165 PT9 C14 C15 doub Y N 166 PT9 N4 C15 sing Y N 167 PT9 N4 PT1 sing N N 168 PT9 C15 N5 sing N N 169 PT9 C5 C4 sing Y N 170 PT9 C5 N1 doub Y N 171 PT9 PT1 N1 sing N N 172 PT9 PT1 N6 sing N N 173 PT9 C4 C3 doub Y N 174 PT9 N1 C1 sing Y N 175 PT9 N5 C16 sing N N 176 PT9 C3 C2 sing Y N 177 PT9 N6 C16 doub Y N 178 PT9 N6 C20 sing Y N 179 PT9 C16 C17 sing Y N 180 PT9 C1 C2 doub Y N 181 PT9 C20 C19 doub Y N 182 PT9 C17 C18 doub Y N 183 PT9 C19 C18 sing Y N 184 PT9 C2 H1 sing N N 185 PT9 C7 H2 sing N N 186 PT9 C8 H3 sing N N 187 PT9 C9 H4 sing N N 188 PT9 C1 H5 sing N N 189 PT9 C3 H6 sing N N 190 PT9 C4 H7 sing N N 191 PT9 C12 H8 sing N N 192 PT9 C13 H9 sing N N 193 PT9 C14 H10 sing N N 194 PT9 C17 H11 sing N N 195 PT9 C18 H12 sing N N 196 PT9 C19 H13 sing N N 197 PT9 C20 H14 sing N N 198 PT9 N5 H15 sing N N 199 PT9 N2 H16 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6F3C 'double helix' 6F3C 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 D DC 4 1_555 -1.577 -0.828 0.085 -7.598 -0.583 -1.844 1 B_DG8:DC5_A B 8 ? A 5 ? 19 1 1 A DT 3 1_555 D DA 3 1_555 -0.891 -0.282 -0.073 1.079 -4.115 -8.765 2 B_DT9:DA4_A B 9 ? A 4 ? 20 1 1 A DA 4 1_555 D DT 2 1_555 -0.376 -0.408 0.116 -2.075 -6.465 -2.828 3 B_DA10:DT3_A B 10 ? A 3 ? 20 1 1 A DC 5 1_555 D DG 1 1_555 0.136 -0.756 0.092 8.135 3.696 -1.617 4 B_DC11:DG2_A B 11 ? A 2 ? 19 1 1 C DG 1 1_555 B DC 5 1_555 0.060 -0.635 -0.107 -4.931 5.974 -4.928 5 C_DG2:DC11_D C 2 ? D 11 ? 19 1 1 C DT 2 1_555 B DA 4 1_555 -0.335 -0.192 0.396 -7.214 -3.372 -6.344 6 C_DT3:DA10_D C 3 ? D 10 ? 20 1 1 C DA 3 1_555 B DT 3 1_555 0.619 -0.280 -0.216 -4.864 -1.125 -10.171 7 C_DA4:DT9_D C 4 ? D 9 ? 20 1 1 C DC 4 1_555 B DG 2 1_555 0.407 -0.665 -0.138 9.444 -3.066 -8.127 8 C_DC5:DG8_D C 5 ? D 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 D DC 4 1_555 A DT 3 1_555 D DA 3 1_555 -0.802 -0.440 3.237 1.706 0.751 38.448 -0.760 1.424 3.191 1.140 -2.589 38.491 1 BB_DG8DT9:DA4DC5_AA B 8 ? A 5 ? B 9 ? A 4 ? 1 A DT 3 1_555 D DA 3 1_555 A DA 4 1_555 D DT 2 1_555 0.077 -0.011 3.334 -1.428 1.076 38.953 -0.149 -0.291 3.328 1.612 2.140 38.993 2 BB_DT9DA10:DT3DA4_AA B 9 ? A 4 ? B 10 ? A 3 ? 1 A DA 4 1_555 D DT 2 1_555 A DC 5 1_555 D DG 1 1_555 0.478 0.114 3.143 0.712 4.488 31.412 -0.587 -0.748 3.138 8.236 -1.306 31.731 3 BB_DA10DC11:DG2DT3_AA B 10 ? A 3 ? B 11 ? A 2 ? 1 A DC 5 1_555 D DG 1 1_555 C DG 1 1_555 B DC 5 1_555 -0.068 1.124 3.579 2.236 0.851 -69.460 -1.020 0.029 3.567 -0.747 1.962 -69.496 4 BC_DC11DG2:DC11DG2_DA B 11 ? A 2 ? C 2 ? D 11 ? 1 C DG 1 1_555 B DC 5 1_555 C DT 2 1_555 B DA 4 1_555 -0.351 -0.152 3.408 -5.053 4.079 26.759 -1.369 -0.561 3.356 8.652 10.719 27.522 5 CC_DG2DT3:DA10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DT 2 1_555 B DA 4 1_555 C DA 3 1_555 B DT 3 1_555 -0.246 -0.181 3.296 4.266 0.258 40.534 -0.288 0.826 3.254 0.372 -6.137 40.750 6 CC_DT3DA4:DT9DA10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DA 3 1_555 B DT 3 1_555 C DC 4 1_555 B DG 2 1_555 0.869 -0.674 3.094 -2.508 1.715 27.812 -1.772 -2.349 2.959 3.555 5.198 27.974 7 CC_DA4DC5:DG8DT9_DD C 4 ? D 9 ? C 5 ? D 8 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PT9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PT9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NP6 _pdbx_initial_refinement_model.details ? # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.176 'H, K, L' ? ? ? 2 1 1 0.824 -h,-k,l ? ? ? # _atom_sites.entry_id 6F3C _atom_sites.fract_transf_matrix[1][1] 0.033234 _atom_sites.fract_transf_matrix[1][2] 0.019187 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038375 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008548 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P PT # loop_