data_6GK2 # _entry.id 6GK2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6GK2 WWPDB D_1200010014 EMDB EMD-0013 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Helical reconstruction of BCL10 CARD and MALT1 DEATH DOMAIN complex' _pdbx_database_related.db_id EMD-0013 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GK2 _pdbx_database_status.recvd_initial_deposition_date 2018-05-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schlauderer, F.' 1 ? 'Desfosses, A.' 2 ? 'Gutsche, I.' 3 ? 'Hopfner, K.P.' 4 ? 'Lammens, K.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 4041 _citation.page_last 4041 _citation.title 'Molecular architecture and regulation of BCL10-MALT1 filaments.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-06573-8 _citation.pdbx_database_id_PubMed 30279415 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schlauderer, F.' 1 ? primary 'Seeholzer, T.' 2 ? primary 'Desfosses, A.' 3 ? primary 'Gehring, T.' 4 ? primary 'Strauss, M.' 5 0000-0002-0986-2868 primary 'Hopfner, K.P.' 6 0000-0002-4528-8357 primary 'Gutsche, I.' 7 ? primary 'Krappmann, D.' 8 ? primary 'Lammens, K.' 9 ? # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6GK2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell lymphoma/leukemia 10' 12614.566 1 ? ? ? ? 2 polymer man 'Mucosa-associated lymphoid tissue lymphoma translocation protein 1' 10401.128 1 3.4.22.- ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;B-cell CLL/lymphoma 10,Bcl-10,CARD-containing molecule enhancing NF-kappa-B,CARD-like apoptotic protein,hCLAP,CED-3/ICH-1 prodomain homologous E10-like regulator,CIPER,Cellular homolog of vCARMEN,cCARMEN,Cellular-E10,c-E10,Mammalian CARD-containing adapter molecule E10,mE10 ; 2 'MALT lymphoma-associated translocation,Paracaspase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTSSRKRAGKLLDYLQENPKGLDTLVESIRRE KTQNFLIQKITDEVLKLRNIKLEHLK ; ;EEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTSSRKRAGKLLDYLQENPKGLDTLVESIRRE KTQNFLIQKITDEVLKLRNIKLEHLK ; H ? 2 'polypeptide(L)' no no ;LNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDF LQAMEHTEVLQL ; ;LNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDF LQAMEHTEVLQL ; F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 ASP n 1 4 LEU n 1 5 THR n 1 6 GLU n 1 7 VAL n 1 8 LYS n 1 9 LYS n 1 10 ASP n 1 11 ALA n 1 12 LEU n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 ARG n 1 17 VAL n 1 18 TYR n 1 19 LEU n 1 20 CYS n 1 21 GLU n 1 22 LYS n 1 23 ILE n 1 24 ILE n 1 25 ALA n 1 26 GLU n 1 27 ARG n 1 28 HIS n 1 29 PHE n 1 30 ASP n 1 31 HIS n 1 32 LEU n 1 33 ARG n 1 34 ALA n 1 35 LYS n 1 36 LYS n 1 37 ILE n 1 38 LEU n 1 39 SER n 1 40 ARG n 1 41 GLU n 1 42 ASP n 1 43 THR n 1 44 GLU n 1 45 GLU n 1 46 ILE n 1 47 SER n 1 48 CYS n 1 49 ARG n 1 50 THR n 1 51 SER n 1 52 SER n 1 53 ARG n 1 54 LYS n 1 55 ARG n 1 56 ALA n 1 57 GLY n 1 58 LYS n 1 59 LEU n 1 60 LEU n 1 61 ASP n 1 62 TYR n 1 63 LEU n 1 64 GLN n 1 65 GLU n 1 66 ASN n 1 67 PRO n 1 68 LYS n 1 69 GLY n 1 70 LEU n 1 71 ASP n 1 72 THR n 1 73 LEU n 1 74 VAL n 1 75 GLU n 1 76 SER n 1 77 ILE n 1 78 ARG n 1 79 ARG n 1 80 GLU n 1 81 LYS n 1 82 THR n 1 83 GLN n 1 84 ASN n 1 85 PHE n 1 86 LEU n 1 87 ILE n 1 88 GLN n 1 89 LYS n 1 90 ILE n 1 91 THR n 1 92 ASP n 1 93 GLU n 1 94 VAL n 1 95 LEU n 1 96 LYS n 1 97 LEU n 1 98 ARG n 1 99 ASN n 1 100 ILE n 1 101 LYS n 1 102 LEU n 1 103 GLU n 1 104 HIS n 1 105 LEU n 1 106 LYS n 2 1 LEU n 2 2 ASN n 2 3 ARG n 2 4 LEU n 2 5 ARG n 2 6 GLU n 2 7 PRO n 2 8 LEU n 2 9 LEU n 2 10 ARG n 2 11 ARG n 2 12 LEU n 2 13 SER n 2 14 GLU n 2 15 LEU n 2 16 LEU n 2 17 ASP n 2 18 GLN n 2 19 ALA n 2 20 PRO n 2 21 GLU n 2 22 GLY n 2 23 ARG n 2 24 GLY n 2 25 TRP n 2 26 ARG n 2 27 ARG n 2 28 LEU n 2 29 ALA n 2 30 GLU n 2 31 LEU n 2 32 ALA n 2 33 GLY n 2 34 SER n 2 35 ARG n 2 36 GLY n 2 37 ARG n 2 38 LEU n 2 39 ARG n 2 40 LEU n 2 41 SER n 2 42 CYS n 2 43 LEU n 2 44 ASP n 2 45 LEU n 2 46 GLU n 2 47 GLN n 2 48 CYS n 2 49 SER n 2 50 LEU n 2 51 LYS n 2 52 VAL n 2 53 LEU n 2 54 GLU n 2 55 PRO n 2 56 GLU n 2 57 GLY n 2 58 SER n 2 59 PRO n 2 60 SER n 2 61 LEU n 2 62 CYS n 2 63 LEU n 2 64 LEU n 2 65 LYS n 2 66 LEU n 2 67 MET n 2 68 GLY n 2 69 GLU n 2 70 LYS n 2 71 GLY n 2 72 CYS n 2 73 THR n 2 74 VAL n 2 75 THR n 2 76 GLU n 2 77 LEU n 2 78 SER n 2 79 ASP n 2 80 PHE n 2 81 LEU n 2 82 GLN n 2 83 ALA n 2 84 MET n 2 85 GLU n 2 86 HIS n 2 87 THR n 2 88 GLU n 2 89 VAL n 2 90 LEU n 2 91 GLN n 2 92 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 106 Human ? 'BCL10, CIPER, CLAP' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 92 Human ? 'MALT1, MLT' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP BCL10_HUMAN O95999 ? 1 ;EEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTSSRKRAGKLLDYLQENPKGLDTLVESIRRE KTQNFLIQKITDEVLKLRNIKLEHLK ; 10 2 UNP MALT1_HUMAN Q9UDY8 ? 2 ;LNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDF LQAMEHTEVLQL ; 30 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GK2 H 1 ? 106 ? O95999 10 ? 115 ? 10 115 2 2 6GK2 F 1 ? 92 ? Q9UDY8 30 ? 121 ? 30 121 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GK2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6GK2 _struct.title 'Helical reconstruction of BCL10 CARD and MALT1 DEATH DOMAIN complex' _struct.pdbx_descriptor 'B-cell lymphoma/leukemia 10, Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (E.C.3.4.22.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GK2 _struct_keywords.text 'BCL10, MALT1, CBM complex, helical reconstruction, cancer, autoimmune disease, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 1 ? ASN A 14 ? GLU H 10 ASN H 23 1 ? 14 HELX_P HELX_P2 AA2 LEU A 15 ? CYS A 20 ? LEU H 24 CYS H 29 1 ? 6 HELX_P HELX_P3 AA3 ALA A 25 ? PHE A 29 ? ALA H 34 PHE H 38 5 ? 5 HELX_P HELX_P4 AA4 ASP A 30 ? LYS A 35 ? ASP H 39 LYS H 44 1 ? 6 HELX_P HELX_P5 AA5 SER A 39 ? CYS A 48 ? SER H 48 CYS H 57 1 ? 10 HELX_P HELX_P6 AA6 SER A 52 ? ASP A 61 ? SER H 61 ASP H 70 1 ? 10 HELX_P HELX_P7 AA7 LYS A 68 ? GLU A 80 ? LYS H 77 GLU H 89 1 ? 13 HELX_P HELX_P8 AA8 PHE A 85 ? LYS A 106 ? PHE H 94 LYS H 115 1 ? 22 HELX_P HELX_P9 AA9 ARG B 5 ? GLN B 18 ? ARG F 34 GLN F 47 1 ? 14 HELX_P HELX_P10 AB1 GLY B 24 ? GLU B 30 ? GLY F 53 GLU F 59 1 ? 7 HELX_P HELX_P11 AB2 CYS B 42 ? VAL B 52 ? CYS F 71 VAL F 81 1 ? 11 HELX_P HELX_P12 AB3 SER B 58 ? GLY B 71 ? SER F 87 GLY F 100 1 ? 14 HELX_P HELX_P13 AB4 THR B 73 ? MET B 84 ? THR F 102 MET F 113 1 ? 12 HELX_P HELX_P14 AB5 HIS B 86 ? GLN B 91 ? HIS F 115 GLN F 120 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 48 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 62 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id F _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 91 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6GK2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 10 10 GLU GLU H . n A 1 2 GLU 2 11 11 GLU GLU H . n A 1 3 ASP 3 12 12 ASP ASP H . n A 1 4 LEU 4 13 13 LEU LEU H . n A 1 5 THR 5 14 14 THR THR H . n A 1 6 GLU 6 15 15 GLU GLU H . n A 1 7 VAL 7 16 16 VAL VAL H . n A 1 8 LYS 8 17 17 LYS LYS H . n A 1 9 LYS 9 18 18 LYS LYS H . n A 1 10 ASP 10 19 19 ASP ASP H . n A 1 11 ALA 11 20 20 ALA ALA H . n A 1 12 LEU 12 21 21 LEU LEU H . n A 1 13 GLU 13 22 22 GLU GLU H . n A 1 14 ASN 14 23 23 ASN ASN H . n A 1 15 LEU 15 24 24 LEU LEU H . n A 1 16 ARG 16 25 25 ARG ARG H . n A 1 17 VAL 17 26 26 VAL VAL H . n A 1 18 TYR 18 27 27 TYR TYR H . n A 1 19 LEU 19 28 28 LEU LEU H . n A 1 20 CYS 20 29 29 CYS CYS H . n A 1 21 GLU 21 30 30 GLU GLU H . n A 1 22 LYS 22 31 31 LYS LYS H . n A 1 23 ILE 23 32 32 ILE ILE H . n A 1 24 ILE 24 33 33 ILE ILE H . n A 1 25 ALA 25 34 34 ALA ALA H . n A 1 26 GLU 26 35 35 GLU GLU H . n A 1 27 ARG 27 36 36 ARG ARG H . n A 1 28 HIS 28 37 37 HIS HIS H . n A 1 29 PHE 29 38 38 PHE PHE H . n A 1 30 ASP 30 39 39 ASP ASP H . n A 1 31 HIS 31 40 40 HIS HIS H . n A 1 32 LEU 32 41 41 LEU LEU H . n A 1 33 ARG 33 42 42 ARG ARG H . n A 1 34 ALA 34 43 43 ALA ALA H . n A 1 35 LYS 35 44 44 LYS LYS H . n A 1 36 LYS 36 45 45 LYS LYS H . n A 1 37 ILE 37 46 46 ILE ILE H . n A 1 38 LEU 38 47 47 LEU LEU H . n A 1 39 SER 39 48 48 SER SER H . n A 1 40 ARG 40 49 49 ARG ARG H . n A 1 41 GLU 41 50 50 GLU GLU H . n A 1 42 ASP 42 51 51 ASP ASP H . n A 1 43 THR 43 52 52 THR THR H . n A 1 44 GLU 44 53 53 GLU GLU H . n A 1 45 GLU 45 54 54 GLU GLU H . n A 1 46 ILE 46 55 55 ILE ILE H . n A 1 47 SER 47 56 56 SER SER H . n A 1 48 CYS 48 57 57 CYS CYS H . n A 1 49 ARG 49 58 58 ARG ARG H . n A 1 50 THR 50 59 59 THR THR H . n A 1 51 SER 51 60 60 SER SER H . n A 1 52 SER 52 61 61 SER SER H . n A 1 53 ARG 53 62 62 ARG ARG H . n A 1 54 LYS 54 63 63 LYS LYS H . n A 1 55 ARG 55 64 64 ARG ARG H . n A 1 56 ALA 56 65 65 ALA ALA H . n A 1 57 GLY 57 66 66 GLY GLY H . n A 1 58 LYS 58 67 67 LYS LYS H . n A 1 59 LEU 59 68 68 LEU LEU H . n A 1 60 LEU 60 69 69 LEU LEU H . n A 1 61 ASP 61 70 70 ASP ASP H . n A 1 62 TYR 62 71 71 TYR TYR H . n A 1 63 LEU 63 72 72 LEU LEU H . n A 1 64 GLN 64 73 73 GLN GLN H . n A 1 65 GLU 65 74 74 GLU GLU H . n A 1 66 ASN 66 75 75 ASN ASN H . n A 1 67 PRO 67 76 76 PRO PRO H . n A 1 68 LYS 68 77 77 LYS LYS H . n A 1 69 GLY 69 78 78 GLY GLY H . n A 1 70 LEU 70 79 79 LEU LEU H . n A 1 71 ASP 71 80 80 ASP ASP H . n A 1 72 THR 72 81 81 THR THR H . n A 1 73 LEU 73 82 82 LEU LEU H . n A 1 74 VAL 74 83 83 VAL VAL H . n A 1 75 GLU 75 84 84 GLU GLU H . n A 1 76 SER 76 85 85 SER SER H . n A 1 77 ILE 77 86 86 ILE ILE H . n A 1 78 ARG 78 87 87 ARG ARG H . n A 1 79 ARG 79 88 88 ARG ARG H . n A 1 80 GLU 80 89 89 GLU GLU H . n A 1 81 LYS 81 90 90 LYS LYS H . n A 1 82 THR 82 91 91 THR THR H . n A 1 83 GLN 83 92 92 GLN GLN H . n A 1 84 ASN 84 93 93 ASN ASN H . n A 1 85 PHE 85 94 94 PHE PHE H . n A 1 86 LEU 86 95 95 LEU LEU H . n A 1 87 ILE 87 96 96 ILE ILE H . n A 1 88 GLN 88 97 97 GLN GLN H . n A 1 89 LYS 89 98 98 LYS LYS H . n A 1 90 ILE 90 99 99 ILE ILE H . n A 1 91 THR 91 100 100 THR THR H . n A 1 92 ASP 92 101 101 ASP ASP H . n A 1 93 GLU 93 102 102 GLU GLU H . n A 1 94 VAL 94 103 103 VAL VAL H . n A 1 95 LEU 95 104 104 LEU LEU H . n A 1 96 LYS 96 105 105 LYS LYS H . n A 1 97 LEU 97 106 106 LEU LEU H . n A 1 98 ARG 98 107 107 ARG ARG H . n A 1 99 ASN 99 108 108 ASN ASN H . n A 1 100 ILE 100 109 109 ILE ILE H . n A 1 101 LYS 101 110 110 LYS LYS H . n A 1 102 LEU 102 111 111 LEU LEU H . n A 1 103 GLU 103 112 112 GLU GLU H . n A 1 104 HIS 104 113 113 HIS HIS H . n A 1 105 LEU 105 114 114 LEU LEU H . n A 1 106 LYS 106 115 115 LYS LYS H . n B 2 1 LEU 1 30 30 LEU LEU F . n B 2 2 ASN 2 31 31 ASN ASN F . n B 2 3 ARG 3 32 32 ARG ARG F . n B 2 4 LEU 4 33 33 LEU LEU F . n B 2 5 ARG 5 34 34 ARG ARG F . n B 2 6 GLU 6 35 35 GLU GLU F . n B 2 7 PRO 7 36 36 PRO PRO F . n B 2 8 LEU 8 37 37 LEU LEU F . n B 2 9 LEU 9 38 38 LEU LEU F . n B 2 10 ARG 10 39 39 ARG ARG F . n B 2 11 ARG 11 40 40 ARG ARG F . n B 2 12 LEU 12 41 41 LEU LEU F . n B 2 13 SER 13 42 42 SER SER F . n B 2 14 GLU 14 43 43 GLU GLU F . n B 2 15 LEU 15 44 44 LEU LEU F . n B 2 16 LEU 16 45 45 LEU LEU F . n B 2 17 ASP 17 46 46 ASP ASP F . n B 2 18 GLN 18 47 47 GLN GLN F . n B 2 19 ALA 19 48 48 ALA ALA F . n B 2 20 PRO 20 49 49 PRO PRO F . n B 2 21 GLU 21 50 50 GLU GLU F . n B 2 22 GLY 22 51 51 GLY GLY F . n B 2 23 ARG 23 52 52 ARG ARG F . n B 2 24 GLY 24 53 53 GLY GLY F . n B 2 25 TRP 25 54 54 TRP TRP F . n B 2 26 ARG 26 55 55 ARG ARG F . n B 2 27 ARG 27 56 56 ARG ARG F . n B 2 28 LEU 28 57 57 LEU LEU F . n B 2 29 ALA 29 58 58 ALA ALA F . n B 2 30 GLU 30 59 59 GLU GLU F . n B 2 31 LEU 31 60 60 LEU LEU F . n B 2 32 ALA 32 61 61 ALA ALA F . n B 2 33 GLY 33 62 62 GLY GLY F . n B 2 34 SER 34 63 63 SER SER F . n B 2 35 ARG 35 64 ? ? ? F . n B 2 36 GLY 36 65 ? ? ? F . n B 2 37 ARG 37 66 ? ? ? F . n B 2 38 LEU 38 67 ? ? ? F . n B 2 39 ARG 39 68 ? ? ? F . n B 2 40 LEU 40 69 ? ? ? F . n B 2 41 SER 41 70 70 SER SER F . n B 2 42 CYS 42 71 71 CYS CYS F . n B 2 43 LEU 43 72 72 LEU LEU F . n B 2 44 ASP 44 73 73 ASP ASP F . n B 2 45 LEU 45 74 74 LEU LEU F . n B 2 46 GLU 46 75 75 GLU GLU F . n B 2 47 GLN 47 76 76 GLN GLN F . n B 2 48 CYS 48 77 77 CYS CYS F . n B 2 49 SER 49 78 78 SER SER F . n B 2 50 LEU 50 79 79 LEU LEU F . n B 2 51 LYS 51 80 80 LYS LYS F . n B 2 52 VAL 52 81 81 VAL VAL F . n B 2 53 LEU 53 82 82 LEU LEU F . n B 2 54 GLU 54 83 83 GLU GLU F . n B 2 55 PRO 55 84 84 PRO PRO F . n B 2 56 GLU 56 85 85 GLU GLU F . n B 2 57 GLY 57 86 86 GLY GLY F . n B 2 58 SER 58 87 87 SER SER F . n B 2 59 PRO 59 88 88 PRO PRO F . n B 2 60 SER 60 89 89 SER SER F . n B 2 61 LEU 61 90 90 LEU LEU F . n B 2 62 CYS 62 91 91 CYS CYS F . n B 2 63 LEU 63 92 92 LEU LEU F . n B 2 64 LEU 64 93 93 LEU LEU F . n B 2 65 LYS 65 94 94 LYS LYS F . n B 2 66 LEU 66 95 95 LEU LEU F . n B 2 67 MET 67 96 96 MET MET F . n B 2 68 GLY 68 97 97 GLY GLY F . n B 2 69 GLU 69 98 98 GLU GLU F . n B 2 70 LYS 70 99 99 LYS LYS F . n B 2 71 GLY 71 100 100 GLY GLY F . n B 2 72 CYS 72 101 101 CYS CYS F . n B 2 73 THR 73 102 102 THR THR F . n B 2 74 VAL 74 103 103 VAL VAL F . n B 2 75 THR 75 104 104 THR THR F . n B 2 76 GLU 76 105 105 GLU GLU F . n B 2 77 LEU 77 106 106 LEU LEU F . n B 2 78 SER 78 107 107 SER SER F . n B 2 79 ASP 79 108 108 ASP ASP F . n B 2 80 PHE 80 109 109 PHE PHE F . n B 2 81 LEU 81 110 110 LEU LEU F . n B 2 82 GLN 82 111 111 GLN GLN F . n B 2 83 ALA 83 112 112 ALA ALA F . n B 2 84 MET 84 113 113 MET MET F . n B 2 85 GLU 85 114 114 GLU GLU F . n B 2 86 HIS 86 115 115 HIS HIS F . n B 2 87 THR 87 116 116 THR THR F . n B 2 88 GLU 88 117 117 GLU GLU F . n B 2 89 VAL 89 118 118 VAL VAL F . n B 2 90 LEU 90 119 119 LEU LEU F . n B 2 91 GLN 91 120 120 GLN GLN F . n B 2 92 LEU 92 121 ? ? ? F . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -2 ? 1 'SSA (A^2)' 12980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-10-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 6GK2 _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method ? _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 6GK2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 9600 _em_3d_reconstruction.resolution 4.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Complex of BCL10 CARD and MALT1 DEATH DOMAIN' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6GK2 _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI ARCTICA' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6GK2 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6GK2 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS H 31 ? ? -91.98 30.65 2 1 LYS H 90 ? ? -83.89 47.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F ARG 64 ? B ARG 35 2 1 Y 1 F GLY 65 ? B GLY 36 3 1 Y 1 F ARG 66 ? B ARG 37 4 1 Y 1 F LEU 67 ? B LEU 38 5 1 Y 1 F ARG 68 ? B ARG 39 6 1 Y 1 F LEU 69 ? B LEU 40 7 1 Y 1 F LEU 121 ? B LEU 92 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 104 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -100.8 _em_helical_entity.axial_rise_per_subunit 5.082 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 99.6 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 25776 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? SPRING 0.86 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 3 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? SPRING 0.86 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #