data_6GT7 # _entry.id 6GT7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GT7 pdb_00006gt7 10.2210/pdb6gt7/pdb WWPDB D_1200010485 ? ? BMRB 34287 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR structure of the free helix bundle domain from the functional pRN1 primase' _pdbx_database_related.db_id 34287 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GT7 _pdbx_database_status.recvd_initial_deposition_date 2018-06-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Boudet, J.' 1 ? 'Lipps, G.' 2 ? 'Allain, F.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 176 _citation.language ? _citation.page_first 154 _citation.page_last 166.e13 _citation.title ;A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2018.11.031 _citation.pdbx_database_id_PubMed 30595448 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boudet, J.' 1 ? primary 'Devillier, J.C.' 2 ? primary 'Wiegand, T.' 3 ? primary 'Salmon, L.' 4 ? primary 'Meier, B.H.' 5 ? primary 'Lipps, G.' 6 ? primary 'Allain, F.H.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'functional pRN1 primase' _entity.formula_weight 13528.738 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Helix bundle domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; _entity_poly.pdbx_seq_one_letter_code_can ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 VAL n 1 4 GLU n 1 5 PHE n 1 6 GLU n 1 7 GLU n 1 8 LEU n 1 9 ARG n 1 10 LYS n 1 11 GLU n 1 12 LEU n 1 13 VAL n 1 14 LYS n 1 15 ARG n 1 16 ASP n 1 17 SER n 1 18 GLY n 1 19 LYS n 1 20 PRO n 1 21 VAL n 1 22 GLU n 1 23 LYS n 1 24 ILE n 1 25 LYS n 1 26 GLU n 1 27 GLU n 1 28 ILE n 1 29 CYS n 1 30 THR n 1 31 LYS n 1 32 SER n 1 33 PRO n 1 34 PRO n 1 35 LYS n 1 36 LEU n 1 37 ILE n 1 38 LYS n 1 39 GLU n 1 40 ILE n 1 41 ILE n 1 42 CYS n 1 43 GLU n 1 44 ASN n 1 45 LYS n 1 46 THR n 1 47 TYR n 1 48 ALA n 1 49 ASP n 1 50 VAL n 1 51 ASN n 1 52 ILE n 1 53 ASP n 1 54 ARG n 1 55 SER n 1 56 ARG n 1 57 GLY n 1 58 ASP n 1 59 TRP n 1 60 HIS n 1 61 VAL n 1 62 ILE n 1 63 LEU n 1 64 TYR n 1 65 LEU n 1 66 MET n 1 67 LYS n 1 68 HIS n 1 69 GLY n 1 70 VAL n 1 71 THR n 1 72 ASP n 1 73 PRO n 1 74 ASP n 1 75 LYS n 1 76 ILE n 1 77 LEU n 1 78 GLU n 1 79 LEU n 1 80 LEU n 1 81 PRO n 1 82 ARG n 1 83 ASP n 1 84 SER n 1 85 LYS n 1 86 ALA n 1 87 LYS n 1 88 GLU n 1 89 ASN n 1 90 GLU n 1 91 LYS n 1 92 TRP n 1 93 ASN n 1 94 THR n 1 95 GLN n 1 96 LYS n 1 97 TYR n 1 98 PHE n 1 99 VAL n 1 100 ILE n 1 101 THR n 1 102 LEU n 1 103 SER n 1 104 LYS n 1 105 ALA n 1 106 TRP n 1 107 SER n 1 108 VAL n 1 109 VAL n 1 110 LYS n 1 111 LYS n 1 112 TYR n 1 113 LEU n 1 114 GLU n 1 115 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 115 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus islandicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 43080 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q54324_SULIS _struct_ref.pdbx_db_accession Q54324 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEA ; _struct_ref.pdbx_align_begin 256 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GT7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q54324 _struct_ref_seq.db_align_beg 256 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 370 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 256 _struct_ref_seq.pdbx_auth_seq_align_end 370 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 15N-NOESY-HSQC 1 isotropic 2 1 1 13Cali-NOESY-HSQC 1 isotropic 3 1 1 13Caro-NOESY-HSQC 1 isotropic 4 1 2 13Cali-HSQC 3 isotropic 5 1 2 13Caro-HSQC 3 isotropic 6 1 1 15N-HSQC 1 isotropic 7 1 1 '3D HNCACB' 2 isotropic 8 1 1 '3D CBCA(CO)NH' 2 isotropic 9 1 1 '3D HNCA' 2 isotropic 10 1 1 '3D HN(CO)CA' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50mM NaCl' _pdbx_nmr_exptl_sample_conditions.details ;phosphate buffer 25mM NaCl 50mM ; _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label condition-1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain, 90% H2O/10% D2O' '90% H2O/10% D2O' hbd1 solution ? 2 '0.7 mM [U-100% 13C] helix bundle domain, 100% D2O' '100% D2O' hbd-2 solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III HD' ? Bruker 900 ? 2 'AVANCE III' ? Bruker 700 ? 3 'AVANCE III' ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 6GT7 _pdbx_nmr_refine.method 'simulated annealing with the SANDER module of AMBER12' _pdbx_nmr_refine.details 'simulated annealing in implicit water under ff12SB force-field' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6GT7 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria '20 structures for lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GT7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' CANDID ? 'Herrmann, Guntert and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GT7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6GT7 _struct.title 'NMR structure of the free helix bundle domain from the functional pRN1 primase' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GT7 _struct_keywords.text 'functional pRN1 primase, replication initiation, dinucleotide formation, unusual archaeo-eukaryotic primase, transferase' _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 1 ? ASP A 16 ? THR A 256 ASP A 271 1 ? 16 HELX_P HELX_P2 AA2 PRO A 20 ? LYS A 31 ? PRO A 275 LYS A 286 1 ? 12 HELX_P HELX_P3 AA3 LYS A 35 ? CYS A 42 ? LYS A 290 CYS A 297 1 ? 8 HELX_P HELX_P4 AA4 ASP A 53 ? GLY A 69 ? ASP A 308 GLY A 324 1 ? 17 HELX_P HELX_P5 AA5 ASP A 72 ? LEU A 79 ? ASP A 327 LEU A 334 1 ? 8 HELX_P HELX_P6 AA6 LYS A 91 ? GLU A 114 ? LYS A 346 GLU A 369 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 42 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 284 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 297 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6GT7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 256 256 THR THR A . n A 1 2 VAL 2 257 257 VAL VAL A . n A 1 3 VAL 3 258 258 VAL VAL A . n A 1 4 GLU 4 259 259 GLU GLU A . n A 1 5 PHE 5 260 260 PHE PHE A . n A 1 6 GLU 6 261 261 GLU GLU A . n A 1 7 GLU 7 262 262 GLU GLU A . n A 1 8 LEU 8 263 263 LEU LEU A . n A 1 9 ARG 9 264 264 ARG ARG A . n A 1 10 LYS 10 265 265 LYS LYS A . n A 1 11 GLU 11 266 266 GLU GLU A . n A 1 12 LEU 12 267 267 LEU LEU A . n A 1 13 VAL 13 268 268 VAL VAL A . n A 1 14 LYS 14 269 269 LYS LYS A . n A 1 15 ARG 15 270 270 ARG ARG A . n A 1 16 ASP 16 271 271 ASP ASP A . n A 1 17 SER 17 272 272 SER SER A . n A 1 18 GLY 18 273 273 GLY GLY A . n A 1 19 LYS 19 274 274 LYS LYS A . n A 1 20 PRO 20 275 275 PRO PRO A . n A 1 21 VAL 21 276 276 VAL VAL A . n A 1 22 GLU 22 277 277 GLU GLU A . n A 1 23 LYS 23 278 278 LYS LYS A . n A 1 24 ILE 24 279 279 ILE ILE A . n A 1 25 LYS 25 280 280 LYS LYS A . n A 1 26 GLU 26 281 281 GLU GLU A . n A 1 27 GLU 27 282 282 GLU GLU A . n A 1 28 ILE 28 283 283 ILE ILE A . n A 1 29 CYS 29 284 284 CYS CYS A . n A 1 30 THR 30 285 285 THR THR A . n A 1 31 LYS 31 286 286 LYS LYS A . n A 1 32 SER 32 287 287 SER SER A . n A 1 33 PRO 33 288 288 PRO PRO A . n A 1 34 PRO 34 289 289 PRO PRO A . n A 1 35 LYS 35 290 290 LYS LYS A . n A 1 36 LEU 36 291 291 LEU LEU A . n A 1 37 ILE 37 292 292 ILE ILE A . n A 1 38 LYS 38 293 293 LYS LYS A . n A 1 39 GLU 39 294 294 GLU GLU A . n A 1 40 ILE 40 295 295 ILE ILE A . n A 1 41 ILE 41 296 296 ILE ILE A . n A 1 42 CYS 42 297 297 CYS CYS A . n A 1 43 GLU 43 298 298 GLU GLU A . n A 1 44 ASN 44 299 299 ASN ASN A . n A 1 45 LYS 45 300 300 LYS LYS A . n A 1 46 THR 46 301 301 THR THR A . n A 1 47 TYR 47 302 302 TYR TYR A . n A 1 48 ALA 48 303 303 ALA ALA A . n A 1 49 ASP 49 304 304 ASP ASP A . n A 1 50 VAL 50 305 305 VAL VAL A . n A 1 51 ASN 51 306 306 ASN ASN A . n A 1 52 ILE 52 307 307 ILE ILE A . n A 1 53 ASP 53 308 308 ASP ASP A . n A 1 54 ARG 54 309 309 ARG ARG A . n A 1 55 SER 55 310 310 SER SER A . n A 1 56 ARG 56 311 311 ARG ARG A . n A 1 57 GLY 57 312 312 GLY GLY A . n A 1 58 ASP 58 313 313 ASP ASP A . n A 1 59 TRP 59 314 314 TRP TRP A . n A 1 60 HIS 60 315 315 HIS HIS A . n A 1 61 VAL 61 316 316 VAL VAL A . n A 1 62 ILE 62 317 317 ILE ILE A . n A 1 63 LEU 63 318 318 LEU LEU A . n A 1 64 TYR 64 319 319 TYR TYR A . n A 1 65 LEU 65 320 320 LEU LEU A . n A 1 66 MET 66 321 321 MET MET A . n A 1 67 LYS 67 322 322 LYS LYS A . n A 1 68 HIS 68 323 323 HIS HIS A . n A 1 69 GLY 69 324 324 GLY GLY A . n A 1 70 VAL 70 325 325 VAL VAL A . n A 1 71 THR 71 326 326 THR THR A . n A 1 72 ASP 72 327 327 ASP ASP A . n A 1 73 PRO 73 328 328 PRO PRO A . n A 1 74 ASP 74 329 329 ASP ASP A . n A 1 75 LYS 75 330 330 LYS LYS A . n A 1 76 ILE 76 331 331 ILE ILE A . n A 1 77 LEU 77 332 332 LEU LEU A . n A 1 78 GLU 78 333 333 GLU GLU A . n A 1 79 LEU 79 334 334 LEU LEU A . n A 1 80 LEU 80 335 335 LEU LEU A . n A 1 81 PRO 81 336 336 PRO PRO A . n A 1 82 ARG 82 337 337 ARG ARG A . n A 1 83 ASP 83 338 338 ASP ASP A . n A 1 84 SER 84 339 339 SER SER A . n A 1 85 LYS 85 340 340 LYS LYS A . n A 1 86 ALA 86 341 341 ALA ALA A . n A 1 87 LYS 87 342 342 LYS LYS A . n A 1 88 GLU 88 343 343 GLU GLU A . n A 1 89 ASN 89 344 344 ASN ASN A . n A 1 90 GLU 90 345 345 GLU GLU A . n A 1 91 LYS 91 346 346 LYS LYS A . n A 1 92 TRP 92 347 347 TRP TRP A . n A 1 93 ASN 93 348 348 ASN ASN A . n A 1 94 THR 94 349 349 THR THR A . n A 1 95 GLN 95 350 350 GLN GLN A . n A 1 96 LYS 96 351 351 LYS LYS A . n A 1 97 TYR 97 352 352 TYR TYR A . n A 1 98 PHE 98 353 353 PHE PHE A . n A 1 99 VAL 99 354 354 VAL VAL A . n A 1 100 ILE 100 355 355 ILE ILE A . n A 1 101 THR 101 356 356 THR THR A . n A 1 102 LEU 102 357 357 LEU LEU A . n A 1 103 SER 103 358 358 SER SER A . n A 1 104 LYS 104 359 359 LYS LYS A . n A 1 105 ALA 105 360 360 ALA ALA A . n A 1 106 TRP 106 361 361 TRP TRP A . n A 1 107 SER 107 362 362 SER SER A . n A 1 108 VAL 108 363 363 VAL VAL A . n A 1 109 VAL 109 364 364 VAL VAL A . n A 1 110 LYS 110 365 365 LYS LYS A . n A 1 111 LYS 111 366 366 LYS LYS A . n A 1 112 TYR 112 367 367 TYR TYR A . n A 1 113 LEU 113 368 368 LEU LEU A . n A 1 114 GLU 114 369 369 GLU GLU A . n A 1 115 ALA 115 370 370 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 7310 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-26 2 'Structure model' 1 1 2019-01-09 3 'Structure model' 1 2 2019-01-23 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' pdbx_nmr_software 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.name' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.page_first' 13 3 'Structure model' '_citation.page_last' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_pdbx_nmr_software.name' 16 5 'Structure model' '_database_2.pdbx_DOI' 17 5 'Structure model' '_database_2.pdbx_database_accession' 18 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 '13C, 15N helix bundle domain' 1.2 ? mM '[U-99% 13C; U-99% 15N]' 1 '15N helix bundle domain' 0.9 ? mM '[U-99% 15N]' 2 '13C helix bundle domain' 0.7 ? mM '[U-100% 13C]' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 326 ? ? -141.61 -5.82 2 1 ASN A 344 ? ? -162.11 -168.96 3 1 GLU A 345 ? ? -74.11 28.89 4 1 LYS A 346 ? ? 63.83 -64.77 5 2 ASN A 344 ? ? -158.62 51.43 6 2 GLU A 345 ? ? 62.68 136.16 7 3 PRO A 289 ? ? -62.01 16.27 8 3 ASN A 299 ? ? 57.22 18.02 9 3 LYS A 300 ? ? -79.55 -167.52 10 4 LYS A 300 ? ? -78.40 -168.73 11 4 ASN A 344 ? ? -164.24 -163.69 12 4 GLU A 345 ? ? -73.69 35.79 13 4 LYS A 346 ? ? 61.61 -71.87 14 5 PRO A 289 ? ? -49.41 152.40 15 5 ASN A 299 ? ? 58.67 17.68 16 5 LYS A 300 ? ? -79.98 -166.68 17 6 LYS A 286 ? ? -96.15 -157.74 18 6 SER A 287 ? ? -118.28 76.25 19 6 LYS A 300 ? ? -79.26 -167.13 20 6 LYS A 342 ? ? -143.17 -26.28 21 7 LYS A 342 ? ? -138.99 -34.42 22 8 ASN A 299 ? ? 56.12 18.77 23 8 LYS A 300 ? ? -84.52 -159.99 24 8 LYS A 342 ? ? -143.54 -25.80 25 9 LYS A 342 ? ? -142.73 -29.36 26 10 ASN A 299 ? ? 57.71 17.28 27 10 THR A 326 ? ? -140.74 -7.34 28 11 PRO A 289 ? ? -55.92 107.27 29 11 ASN A 344 ? ? -163.22 -55.77 30 11 GLU A 345 ? ? -146.57 -122.11 31 11 LYS A 346 ? ? -142.47 -69.99 32 12 LYS A 342 ? ? -139.63 -30.27 33 12 GLU A 343 ? ? -103.53 73.67 34 13 ASN A 299 ? ? 48.26 27.63 35 13 LYS A 300 ? ? -79.58 -162.18 36 13 LYS A 342 ? ? -143.14 -28.18 37 14 LYS A 300 ? ? -79.17 -160.82 38 14 ASN A 344 ? ? -162.29 -52.58 39 14 GLU A 345 ? ? -161.54 -89.84 40 14 LYS A 346 ? ? -163.20 -64.44 41 15 PRO A 289 ? ? -62.51 29.12 42 15 LYS A 300 ? ? -78.88 -167.17 43 15 LYS A 342 ? ? -142.00 -26.87 44 15 GLU A 345 ? ? -68.24 -80.15 45 15 LYS A 346 ? ? -148.45 -59.52 46 16 THR A 326 ? ? -140.25 -8.02 47 16 LYS A 342 ? ? -141.19 -26.67 48 17 ASN A 299 ? ? 57.11 17.78 49 17 LYS A 300 ? ? -78.91 -168.90 50 18 THR A 326 ? ? -140.89 -8.68 51 19 LYS A 300 ? ? -77.48 -163.54 52 19 LYS A 342 ? ? -141.48 -22.78 53 19 GLU A 343 ? ? -111.71 62.03 54 20 LYS A 300 ? ? -77.52 -169.51 55 20 LYS A 342 ? ? -142.42 -30.99 # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number '310030 141160' _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #