data_6HPC # _entry.id 6HPC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6HPC WWPDB D_1200012008 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 6HPB _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6HPC _pdbx_database_status.recvd_initial_deposition_date 2018-09-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Manav, M.C.' 1 0000-0003-3540-2803 'Brodersen, D.E.' 2 0000-0002-5413-4667 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1675 _citation.page_last 1685.e3 _citation.title 'The E. coli HicB Antitoxin Contains a Structurally Stable Helix-Turn-Helix DNA Binding Domain.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2019.08.008 _citation.pdbx_database_id_PubMed 31495532 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manav, M.C.' 1 ? primary 'Turnbull, K.J.' 2 ? primary 'Jurenas, D.' 3 ? primary 'Garcia-Pino, A.' 4 ? primary 'Gerdes, K.' 5 ? primary 'Brodersen, D.E.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 103.760 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6HPC _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.090 _cell.length_a_esd ? _cell.length_b 60.380 _cell.length_b_esd ? _cell.length_c 59.340 _cell.length_c_esd ? _cell.volume 149958.397 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Antitoxin HicB' 15449.135 2 ? ? ? ? 2 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RYPVTLTPAPEGGY(MSE)VSFVDIPEALTQGETVAEA(MSE)EAAKDALLTAFDFYFEDNELIPLPSPLNSHDH FIEVPLSVASKVLLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLV(MSE)V ; _entity_poly.pdbx_seq_one_letter_code_can ;MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV ; _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 TYR n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 LEU n 1 8 THR n 1 9 PRO n 1 10 ALA n 1 11 PRO n 1 12 GLU n 1 13 GLY n 1 14 GLY n 1 15 TYR n 1 16 MSE n 1 17 VAL n 1 18 SER n 1 19 PHE n 1 20 VAL n 1 21 ASP n 1 22 ILE n 1 23 PRO n 1 24 GLU n 1 25 ALA n 1 26 LEU n 1 27 THR n 1 28 GLN n 1 29 GLY n 1 30 GLU n 1 31 THR n 1 32 VAL n 1 33 ALA n 1 34 GLU n 1 35 ALA n 1 36 MSE n 1 37 GLU n 1 38 ALA n 1 39 ALA n 1 40 LYS n 1 41 ASP n 1 42 ALA n 1 43 LEU n 1 44 LEU n 1 45 THR n 1 46 ALA n 1 47 PHE n 1 48 ASP n 1 49 PHE n 1 50 TYR n 1 51 PHE n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 GLU n 1 56 LEU n 1 57 ILE n 1 58 PRO n 1 59 LEU n 1 60 PRO n 1 61 SER n 1 62 PRO n 1 63 LEU n 1 64 ASN n 1 65 SER n 1 66 HIS n 1 67 ASP n 1 68 HIS n 1 69 PHE n 1 70 ILE n 1 71 GLU n 1 72 VAL n 1 73 PRO n 1 74 LEU n 1 75 SER n 1 76 VAL n 1 77 ALA n 1 78 SER n 1 79 LYS n 1 80 VAL n 1 81 LEU n 1 82 LEU n 1 83 LEU n 1 84 ASN n 1 85 ALA n 1 86 PHE n 1 87 LEU n 1 88 GLN n 1 89 SER n 1 90 GLU n 1 91 ILE n 1 92 THR n 1 93 GLN n 1 94 GLN n 1 95 GLU n 1 96 LEU n 1 97 ALA n 1 98 ARG n 1 99 ARG n 1 100 ILE n 1 101 GLY n 1 102 LYS n 1 103 PRO n 1 104 LYS n 1 105 GLN n 1 106 GLU n 1 107 ILE n 1 108 THR n 1 109 ARG n 1 110 LEU n 1 111 PHE n 1 112 ASN n 1 113 LEU n 1 114 HIS n 1 115 HIS n 1 116 ALA n 1 117 THR n 1 118 LYS n 1 119 ILE n 1 120 ASP n 1 121 ALA n 1 122 VAL n 1 123 GLN n 1 124 LEU n 1 125 ALA n 1 126 ALA n 1 127 LYS n 1 128 ALA n 1 129 LEU n 1 130 GLY n 1 131 LYS n 1 132 GLU n 1 133 LEU n 1 134 SER n 1 135 LEU n 1 136 VAL n 1 137 MSE n 1 138 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 138 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'hicB, AC45_3823' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli 2-210-07_S3_C3' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1444180 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'BL21(DE3)' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A070SL92_ECOLX _struct_ref.pdbx_db_accession A0A070SL92 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV ; _struct_ref.pdbx_align_begin 8 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6HPC B 1 ? 138 ? A0A070SL92 8 ? 145 ? 1 138 2 1 6HPC A 1 ? 138 ? A0A070SL92 8 ? 145 ? 1 138 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HPC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;4 % Tacsimate 12 % PEG 3350 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-05-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 85.40 _reflns.entry_id 6HPC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.26 _reflns.d_resolution_low 57.64 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13836 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.83 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs 0.033 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 1.18 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.26 _reflns_shell.d_res_low 2.341 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.18 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1363 _reflns_shell.percent_possible_all 98.62 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1082 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.526 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 85.40 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6HPC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.26 _refine.ls_d_res_low 57.64 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13822 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.83 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2679 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2266 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2146 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 2185 _refine_hist.d_res_high 2.26 _refine_hist.d_res_low 57.64 # _struct.entry_id 6HPC _struct.title 'Crystal structure of the HicB antitoxin from E. coli' _struct.pdbx_descriptor 'Antitoxin HicB' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HPC _struct_keywords.text 'dna binding, helix-turn-helix, HTH, ANTITOXIN' _struct_keywords.pdbx_keywords ANTITOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 31 ? ASN A 54 ? THR B 31 ASN B 54 1 ? 24 HELX_P HELX_P2 AA2 PRO A 73 ? GLU A 90 ? PRO B 73 GLU B 90 1 ? 18 HELX_P HELX_P3 AA3 THR A 92 ? GLY A 101 ? THR B 92 GLY B 101 1 ? 10 HELX_P HELX_P4 AA4 LYS A 104 ? PHE A 111 ? LYS B 104 PHE B 111 1 ? 8 HELX_P HELX_P5 AA5 LYS A 118 ? LEU A 129 ? LYS B 118 LEU B 129 1 ? 12 HELX_P HELX_P6 AA6 THR B 31 ? ASP B 53 ? THR A 31 ASP A 53 1 ? 23 HELX_P HELX_P7 AA7 PRO B 73 ? GLU B 90 ? PRO A 73 GLU A 90 1 ? 18 HELX_P HELX_P8 AA8 THR B 92 ? GLY B 101 ? THR A 92 GLY A 101 1 ? 10 HELX_P HELX_P9 AA9 PRO B 103 ? PHE B 111 ? PRO A 103 PHE A 111 1 ? 9 HELX_P HELX_P10 AB1 LYS B 118 ? LEU B 129 ? LYS A 118 LEU A 129 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 1 C ? ? ? 1_555 A ARG 2 N ? ? B MSE 1 B ARG 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A TYR 15 C ? ? ? 1_555 A MSE 16 N ? ? B TYR 15 B MSE 16 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A MSE 16 C ? ? ? 1_555 A VAL 17 N ? ? B MSE 16 B VAL 17 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale both ? A ALA 35 C ? ? ? 1_555 A MSE 36 N ? ? B ALA 35 B MSE 36 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale both ? A MSE 36 C ? ? ? 1_555 A GLU 37 N ? ? B MSE 36 B GLU 37 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale both ? A VAL 136 C ? ? ? 1_555 A MSE 137 N ? ? B VAL 136 B MSE 137 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? A MSE 137 C ? ? ? 1_555 A VAL 138 N ? ? B MSE 137 B VAL 138 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale both ? B MSE 1 C ? ? ? 1_555 B ARG 2 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale both ? B TYR 15 C ? ? ? 1_555 B MSE 16 N ? ? A TYR 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? B MSE 16 C ? ? ? 1_555 B VAL 17 N ? ? A MSE 16 A VAL 17 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale both ? B ALA 35 C ? ? ? 1_555 B MSE 36 N ? ? A ALA 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale both ? B MSE 36 C ? ? ? 1_555 B GLU 37 N ? ? A MSE 36 A GLU 37 1_555 ? ? ? ? ? ? ? 1.335 ? covale13 covale both ? B VAL 136 C ? ? ? 1_555 B MSE 137 N ? ? A VAL 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.326 ? covale14 covale both ? B MSE 137 C ? ? ? 1_555 B VAL 138 N ? ? A MSE 137 A VAL 138 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 26 ? GLY A 29 ? LEU B 26 GLY B 29 AA1 2 TYR A 15 ? PHE A 19 ? TYR B 15 PHE B 19 AA1 3 ARG A 2 ? PRO A 9 ? ARG B 2 PRO B 9 AA1 4 HIS A 68 ? GLU A 71 ? HIS B 68 GLU B 71 AA2 1 GLU A 132 ? MSE A 137 ? GLU B 132 MSE B 137 AA2 2 LEU B 133 ? VAL B 138 ? LEU A 133 VAL A 138 AA3 1 LEU B 26 ? GLY B 29 ? LEU A 26 GLY A 29 AA3 2 TYR B 15 ? PHE B 19 ? TYR A 15 PHE A 19 AA3 3 ARG B 2 ? PRO B 9 ? ARG A 2 PRO A 9 AA3 4 PHE B 69 ? GLU B 71 ? PHE A 69 GLU A 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 27 ? O THR B 27 N VAL A 17 ? N VAL B 17 AA1 2 3 O SER A 18 ? O SER B 18 N THR A 6 ? N THR B 6 AA1 3 4 N TYR A 3 ? N TYR B 3 O ILE A 70 ? O ILE B 70 AA2 1 2 N SER A 134 ? N SER B 134 O VAL B 136 ? O VAL A 136 AA3 1 2 O GLY B 29 ? O GLY A 29 N TYR B 15 ? N TYR A 15 AA3 2 3 O SER B 18 ? O SER A 18 N THR B 6 ? N THR A 6 AA3 3 4 N TYR B 3 ? N TYR A 3 O ILE B 70 ? O ILE A 70 # _atom_sites.entry_id 6HPC _atom_sites.fract_transf_matrix[1][1] 0.023207 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005683 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017350 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE B . n A 1 2 ARG 2 2 2 ARG ARG B . n A 1 3 TYR 3 3 3 TYR TYR B . n A 1 4 PRO 4 4 4 PRO PRO B . n A 1 5 VAL 5 5 5 VAL VAL B . n A 1 6 THR 6 6 6 THR THR B . n A 1 7 LEU 7 7 7 LEU LEU B . n A 1 8 THR 8 8 8 THR THR B . n A 1 9 PRO 9 9 9 PRO PRO B . n A 1 10 ALA 10 10 10 ALA ALA B . n A 1 11 PRO 11 11 11 PRO PRO B . n A 1 12 GLU 12 12 12 GLU GLU B . n A 1 13 GLY 13 13 13 GLY GLY B . n A 1 14 GLY 14 14 14 GLY GLY B . n A 1 15 TYR 15 15 15 TYR TYR B . n A 1 16 MSE 16 16 16 MSE MSE B . n A 1 17 VAL 17 17 17 VAL VAL B . n A 1 18 SER 18 18 18 SER SER B . n A 1 19 PHE 19 19 19 PHE PHE B . n A 1 20 VAL 20 20 20 VAL VAL B . n A 1 21 ASP 21 21 21 ASP ASP B . n A 1 22 ILE 22 22 22 ILE ILE B . n A 1 23 PRO 23 23 23 PRO PRO B . n A 1 24 GLU 24 24 24 GLU GLU B . n A 1 25 ALA 25 25 25 ALA ALA B . n A 1 26 LEU 26 26 26 LEU LEU B . n A 1 27 THR 27 27 27 THR THR B . n A 1 28 GLN 28 28 28 GLN GLN B . n A 1 29 GLY 29 29 29 GLY GLY B . n A 1 30 GLU 30 30 30 GLU GLU B . n A 1 31 THR 31 31 31 THR THR B . n A 1 32 VAL 32 32 32 VAL VAL B . n A 1 33 ALA 33 33 33 ALA ALA B . n A 1 34 GLU 34 34 34 GLU GLU B . n A 1 35 ALA 35 35 35 ALA ALA B . n A 1 36 MSE 36 36 36 MSE MSE B . n A 1 37 GLU 37 37 37 GLU GLU B . n A 1 38 ALA 38 38 38 ALA ALA B . n A 1 39 ALA 39 39 39 ALA ALA B . n A 1 40 LYS 40 40 40 LYS LYS B . n A 1 41 ASP 41 41 41 ASP ASP B . n A 1 42 ALA 42 42 42 ALA ALA B . n A 1 43 LEU 43 43 43 LEU LEU B . n A 1 44 LEU 44 44 44 LEU LEU B . n A 1 45 THR 45 45 45 THR THR B . n A 1 46 ALA 46 46 46 ALA ALA B . n A 1 47 PHE 47 47 47 PHE PHE B . n A 1 48 ASP 48 48 48 ASP ASP B . n A 1 49 PHE 49 49 49 PHE PHE B . n A 1 50 TYR 50 50 50 TYR TYR B . n A 1 51 PHE 51 51 51 PHE PHE B . n A 1 52 GLU 52 52 52 GLU GLU B . n A 1 53 ASP 53 53 53 ASP ASP B . n A 1 54 ASN 54 54 54 ASN ASN B . n A 1 55 GLU 55 55 55 GLU GLU B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 ILE 57 57 57 ILE ILE B . n A 1 58 PRO 58 58 58 PRO PRO B . n A 1 59 LEU 59 59 59 LEU LEU B . n A 1 60 PRO 60 60 60 PRO PRO B . n A 1 61 SER 61 61 61 SER SER B . n A 1 62 PRO 62 62 62 PRO PRO B . n A 1 63 LEU 63 63 63 LEU LEU B . n A 1 64 ASN 64 64 64 ASN ASN B . n A 1 65 SER 65 65 65 SER SER B . n A 1 66 HIS 66 66 66 HIS HIS B . n A 1 67 ASP 67 67 67 ASP ASP B . n A 1 68 HIS 68 68 68 HIS HIS B . n A 1 69 PHE 69 69 69 PHE PHE B . n A 1 70 ILE 70 70 70 ILE ILE B . n A 1 71 GLU 71 71 71 GLU GLU B . n A 1 72 VAL 72 72 72 VAL VAL B . n A 1 73 PRO 73 73 73 PRO PRO B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 SER 75 75 75 SER SER B . n A 1 76 VAL 76 76 76 VAL VAL B . n A 1 77 ALA 77 77 77 ALA ALA B . n A 1 78 SER 78 78 78 SER SER B . n A 1 79 LYS 79 79 79 LYS LYS B . n A 1 80 VAL 80 80 80 VAL VAL B . n A 1 81 LEU 81 81 81 LEU LEU B . n A 1 82 LEU 82 82 82 LEU LEU B . n A 1 83 LEU 83 83 83 LEU LEU B . n A 1 84 ASN 84 84 84 ASN ASN B . n A 1 85 ALA 85 85 85 ALA ALA B . n A 1 86 PHE 86 86 86 PHE PHE B . n A 1 87 LEU 87 87 87 LEU LEU B . n A 1 88 GLN 88 88 88 GLN GLN B . n A 1 89 SER 89 89 89 SER SER B . n A 1 90 GLU 90 90 90 GLU GLU B . n A 1 91 ILE 91 91 91 ILE ILE B . n A 1 92 THR 92 92 92 THR THR B . n A 1 93 GLN 93 93 93 GLN GLN B . n A 1 94 GLN 94 94 94 GLN GLN B . n A 1 95 GLU 95 95 95 GLU GLU B . n A 1 96 LEU 96 96 96 LEU LEU B . n A 1 97 ALA 97 97 97 ALA ALA B . n A 1 98 ARG 98 98 98 ARG ARG B . n A 1 99 ARG 99 99 99 ARG ARG B . n A 1 100 ILE 100 100 100 ILE ILE B . n A 1 101 GLY 101 101 101 GLY GLY B . n A 1 102 LYS 102 102 102 LYS LYS B . n A 1 103 PRO 103 103 103 PRO PRO B . n A 1 104 LYS 104 104 104 LYS LYS B . n A 1 105 GLN 105 105 105 GLN GLN B . n A 1 106 GLU 106 106 106 GLU GLU B . n A 1 107 ILE 107 107 107 ILE ILE B . n A 1 108 THR 108 108 108 THR THR B . n A 1 109 ARG 109 109 109 ARG ARG B . n A 1 110 LEU 110 110 110 LEU LEU B . n A 1 111 PHE 111 111 111 PHE PHE B . n A 1 112 ASN 112 112 112 ASN ASN B . n A 1 113 LEU 113 113 113 LEU LEU B . n A 1 114 HIS 114 114 114 HIS HIS B . n A 1 115 HIS 115 115 115 HIS HIS B . n A 1 116 ALA 116 116 116 ALA ALA B . n A 1 117 THR 117 117 117 THR THR B . n A 1 118 LYS 118 118 118 LYS LYS B . n A 1 119 ILE 119 119 119 ILE ILE B . n A 1 120 ASP 120 120 120 ASP ASP B . n A 1 121 ALA 121 121 121 ALA ALA B . n A 1 122 VAL 122 122 122 VAL VAL B . n A 1 123 GLN 123 123 123 GLN GLN B . n A 1 124 LEU 124 124 124 LEU LEU B . n A 1 125 ALA 125 125 125 ALA ALA B . n A 1 126 ALA 126 126 126 ALA ALA B . n A 1 127 LYS 127 127 127 LYS LYS B . n A 1 128 ALA 128 128 128 ALA ALA B . n A 1 129 LEU 129 129 129 LEU LEU B . n A 1 130 GLY 130 130 130 GLY GLY B . n A 1 131 LYS 131 131 131 LYS LYS B . n A 1 132 GLU 132 132 132 GLU GLU B . n A 1 133 LEU 133 133 133 LEU LEU B . n A 1 134 SER 134 134 134 SER SER B . n A 1 135 LEU 135 135 135 LEU LEU B . n A 1 136 VAL 136 136 136 VAL VAL B . n A 1 137 MSE 137 137 137 MSE MSE B . n A 1 138 VAL 138 138 138 VAL VAL B . n B 1 1 MSE 1 1 1 MSE MSE A . n B 1 2 ARG 2 2 2 ARG ARG A . n B 1 3 TYR 3 3 3 TYR TYR A . n B 1 4 PRO 4 4 4 PRO PRO A . n B 1 5 VAL 5 5 5 VAL VAL A . n B 1 6 THR 6 6 6 THR THR A . n B 1 7 LEU 7 7 7 LEU LEU A . n B 1 8 THR 8 8 8 THR THR A . n B 1 9 PRO 9 9 9 PRO PRO A . n B 1 10 ALA 10 10 10 ALA ALA A . n B 1 11 PRO 11 11 11 PRO PRO A . n B 1 12 GLU 12 12 12 GLU GLU A . n B 1 13 GLY 13 13 13 GLY GLY A . n B 1 14 GLY 14 14 14 GLY GLY A . n B 1 15 TYR 15 15 15 TYR TYR A . n B 1 16 MSE 16 16 16 MSE MSE A . n B 1 17 VAL 17 17 17 VAL VAL A . n B 1 18 SER 18 18 18 SER SER A . n B 1 19 PHE 19 19 19 PHE PHE A . n B 1 20 VAL 20 20 20 VAL VAL A . n B 1 21 ASP 21 21 21 ASP ASP A . n B 1 22 ILE 22 22 22 ILE ILE A . n B 1 23 PRO 23 23 23 PRO PRO A . n B 1 24 GLU 24 24 24 GLU GLU A . n B 1 25 ALA 25 25 25 ALA ALA A . n B 1 26 LEU 26 26 26 LEU LEU A . n B 1 27 THR 27 27 27 THR THR A . n B 1 28 GLN 28 28 28 GLN GLN A . n B 1 29 GLY 29 29 29 GLY GLY A . n B 1 30 GLU 30 30 30 GLU GLU A . n B 1 31 THR 31 31 31 THR THR A . n B 1 32 VAL 32 32 32 VAL VAL A . n B 1 33 ALA 33 33 33 ALA ALA A . n B 1 34 GLU 34 34 34 GLU GLU A . n B 1 35 ALA 35 35 35 ALA ALA A . n B 1 36 MSE 36 36 36 MSE MSE A . n B 1 37 GLU 37 37 37 GLU GLU A . n B 1 38 ALA 38 38 38 ALA ALA A . n B 1 39 ALA 39 39 39 ALA ALA A . n B 1 40 LYS 40 40 40 LYS LYS A . n B 1 41 ASP 41 41 41 ASP ASP A . n B 1 42 ALA 42 42 42 ALA ALA A . n B 1 43 LEU 43 43 43 LEU LEU A . n B 1 44 LEU 44 44 44 LEU LEU A . n B 1 45 THR 45 45 45 THR THR A . n B 1 46 ALA 46 46 46 ALA ALA A . n B 1 47 PHE 47 47 47 PHE PHE A . n B 1 48 ASP 48 48 48 ASP ASP A . n B 1 49 PHE 49 49 49 PHE PHE A . n B 1 50 TYR 50 50 50 TYR TYR A . n B 1 51 PHE 51 51 51 PHE PHE A . n B 1 52 GLU 52 52 52 GLU GLU A . n B 1 53 ASP 53 53 53 ASP ASP A . n B 1 54 ASN 54 54 54 ASN ASN A . n B 1 55 GLU 55 55 55 GLU GLU A . n B 1 56 LEU 56 56 56 LEU LEU A . n B 1 57 ILE 57 57 57 ILE ILE A . n B 1 58 PRO 58 58 58 PRO PRO A . n B 1 59 LEU 59 59 59 LEU LEU A . n B 1 60 PRO 60 60 60 PRO PRO A . n B 1 61 SER 61 61 61 SER SER A . n B 1 62 PRO 62 62 62 PRO PRO A . n B 1 63 LEU 63 63 63 LEU LEU A . n B 1 64 ASN 64 64 64 ASN ASN A . n B 1 65 SER 65 65 65 SER SER A . n B 1 66 HIS 66 66 66 HIS HIS A . n B 1 67 ASP 67 67 67 ASP ASP A . n B 1 68 HIS 68 68 68 HIS HIS A . n B 1 69 PHE 69 69 69 PHE PHE A . n B 1 70 ILE 70 70 70 ILE ILE A . n B 1 71 GLU 71 71 71 GLU GLU A . n B 1 72 VAL 72 72 72 VAL VAL A . n B 1 73 PRO 73 73 73 PRO PRO A . n B 1 74 LEU 74 74 74 LEU LEU A . n B 1 75 SER 75 75 75 SER SER A . n B 1 76 VAL 76 76 76 VAL VAL A . n B 1 77 ALA 77 77 77 ALA ALA A . n B 1 78 SER 78 78 78 SER SER A . n B 1 79 LYS 79 79 79 LYS LYS A . n B 1 80 VAL 80 80 80 VAL VAL A . n B 1 81 LEU 81 81 81 LEU LEU A . n B 1 82 LEU 82 82 82 LEU LEU A . n B 1 83 LEU 83 83 83 LEU LEU A . n B 1 84 ASN 84 84 84 ASN ASN A . n B 1 85 ALA 85 85 85 ALA ALA A . n B 1 86 PHE 86 86 86 PHE PHE A . n B 1 87 LEU 87 87 87 LEU LEU A . n B 1 88 GLN 88 88 88 GLN GLN A . n B 1 89 SER 89 89 89 SER SER A . n B 1 90 GLU 90 90 90 GLU GLU A . n B 1 91 ILE 91 91 91 ILE ILE A . n B 1 92 THR 92 92 92 THR THR A . n B 1 93 GLN 93 93 93 GLN GLN A . n B 1 94 GLN 94 94 94 GLN GLN A . n B 1 95 GLU 95 95 95 GLU GLU A . n B 1 96 LEU 96 96 96 LEU LEU A . n B 1 97 ALA 97 97 97 ALA ALA A . n B 1 98 ARG 98 98 98 ARG ARG A . n B 1 99 ARG 99 99 99 ARG ARG A . n B 1 100 ILE 100 100 100 ILE ILE A . n B 1 101 GLY 101 101 101 GLY GLY A . n B 1 102 LYS 102 102 102 LYS LYS A . n B 1 103 PRO 103 103 103 PRO PRO A . n B 1 104 LYS 104 104 104 LYS LYS A . n B 1 105 GLN 105 105 105 GLN GLN A . n B 1 106 GLU 106 106 106 GLU GLU A . n B 1 107 ILE 107 107 107 ILE ILE A . n B 1 108 THR 108 108 108 THR THR A . n B 1 109 ARG 109 109 109 ARG ARG A . n B 1 110 LEU 110 110 110 LEU LEU A . n B 1 111 PHE 111 111 111 PHE PHE A . n B 1 112 ASN 112 112 112 ASN ASN A . n B 1 113 LEU 113 113 113 LEU LEU A . n B 1 114 HIS 114 114 114 HIS HIS A . n B 1 115 HIS 115 115 115 HIS HIS A . n B 1 116 ALA 116 116 116 ALA ALA A . n B 1 117 THR 117 117 117 THR THR A . n B 1 118 LYS 118 118 118 LYS LYS A . n B 1 119 ILE 119 119 119 ILE ILE A . n B 1 120 ASP 120 120 120 ASP ASP A . n B 1 121 ALA 121 121 121 ALA ALA A . n B 1 122 VAL 122 122 122 VAL VAL A . n B 1 123 GLN 123 123 123 GLN GLN A . n B 1 124 LEU 124 124 124 LEU LEU A . n B 1 125 ALA 125 125 125 ALA ALA A . n B 1 126 ALA 126 126 126 ALA ALA A . n B 1 127 LYS 127 127 127 LYS LYS A . n B 1 128 ALA 128 128 128 ALA ALA A . n B 1 129 LEU 129 129 129 LEU LEU A . n B 1 130 GLY 130 130 130 GLY GLY A . n B 1 131 LYS 131 131 131 LYS LYS A . n B 1 132 GLU 132 132 132 GLU GLU A . n B 1 133 LEU 133 133 133 LEU LEU A . n B 1 134 SER 134 134 134 SER SER A . n B 1 135 LEU 135 135 135 LEU LEU A . n B 1 136 VAL 136 136 136 VAL VAL A . n B 1 137 MSE 137 137 137 MSE MSE A . n B 1 138 VAL 138 138 138 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 10 HOH HOH B . C 2 HOH 2 202 31 HOH HOH B . C 2 HOH 3 203 42 HOH HOH B . C 2 HOH 4 204 21 HOH HOH B . C 2 HOH 5 205 9 HOH HOH B . C 2 HOH 6 206 28 HOH HOH B . C 2 HOH 7 207 12 HOH HOH B . C 2 HOH 8 208 48 HOH HOH B . C 2 HOH 9 209 47 HOH HOH B . C 2 HOH 10 210 32 HOH HOH B . C 2 HOH 11 211 11 HOH HOH B . C 2 HOH 12 212 5 HOH HOH B . C 2 HOH 13 213 26 HOH HOH B . C 2 HOH 14 214 46 HOH HOH B . C 2 HOH 15 215 17 HOH HOH B . C 2 HOH 16 216 44 HOH HOH B . C 2 HOH 17 217 43 HOH HOH B . C 2 HOH 18 218 45 HOH HOH B . C 2 HOH 19 219 2 HOH HOH B . C 2 HOH 20 220 16 HOH HOH B . C 2 HOH 21 221 40 HOH HOH B . C 2 HOH 22 222 51 HOH HOH B . C 2 HOH 23 223 50 HOH HOH B . D 2 HOH 1 201 37 HOH HOH A . D 2 HOH 2 202 30 HOH HOH A . D 2 HOH 3 203 41 HOH HOH A . D 2 HOH 4 204 52 HOH HOH A . D 2 HOH 5 205 22 HOH HOH A . D 2 HOH 6 206 49 HOH HOH A . D 2 HOH 7 207 29 HOH HOH A . D 2 HOH 8 208 33 HOH HOH A . D 2 HOH 9 209 24 HOH HOH A . D 2 HOH 10 210 18 HOH HOH A . D 2 HOH 11 211 34 HOH HOH A . D 2 HOH 12 212 23 HOH HOH A . D 2 HOH 13 213 8 HOH HOH A . D 2 HOH 14 214 38 HOH HOH A . D 2 HOH 15 215 39 HOH HOH A . D 2 HOH 16 216 19 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 B MSE 1 ? MET 'modified residue' 2 A MSE 16 B MSE 16 ? MET 'modified residue' 3 A MSE 36 B MSE 36 ? MET 'modified residue' 4 A MSE 137 B MSE 137 ? MET 'modified residue' 5 B MSE 1 A MSE 1 ? MET 'modified residue' 6 B MSE 16 A MSE 16 ? MET 'modified residue' 7 B MSE 36 A MSE 36 ? MET 'modified residue' 8 B MSE 137 A MSE 137 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -21 ? 1 'SSA (A^2)' 15010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-18 2 'Structure model' 1 1 2019-10-16 3 'Structure model' 1 2 2019-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_reflns.pdbx_CC_half' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 12 ? ? O A HOH 201 ? ? 1.97 2 1 OG1 A THR 6 ? ? OG A SER 18 ? ? 1.99 3 1 OE1 B GLU 106 ? ? NH2 B ARG 109 ? ? 2.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B ARG 109 ? ? CG B ARG 109 ? ? CD B ARG 109 ? ? 128.19 111.60 16.59 2.60 N 2 1 CG B ARG 109 ? ? CD B ARG 109 ? ? NE B ARG 109 ? ? 127.66 111.80 15.86 2.10 N 3 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH1 B ARG 109 ? ? 116.78 120.30 -3.52 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 27 ? ? -164.32 -169.32 2 1 ASN B 54 ? ? 36.14 63.10 3 1 HIS B 66 ? ? -106.65 47.29 4 1 PHE B 111 ? ? -96.58 43.71 5 1 ASN A 54 ? ? 39.02 64.49 6 1 HIS A 66 ? ? -105.44 53.38 7 1 PHE A 111 ? ? -98.74 40.36 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 222 ? 6.28 . 2 1 O ? B HOH 223 ? 6.42 . 3 1 O ? A HOH 215 ? 6.72 . 4 1 O ? A HOH 216 ? 6.84 . # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Novo Nordisk Foundation' Denmark NNF17OC0030646 1 'Danish National Research Foundation' Denmark DNRF120 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system monoclinic _space_group.name_H-M_alt 'P 1 21 1' _space_group.IT_number 4 _space_group.name_Hall 'P 2yb' _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z #