HEADER VIRUS LIKE PARTICLE 05-OCT-18 6HTX TITLE WT HEPATITIS B CORE PROTEIN CAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: CORE ANTIGEN,CORE PROTEIN,HBCAG,P21.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS AYW/FRANCE/TIOLLAIS/1979; SOURCE 3 ORGANISM_TAXID: 490133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: CODONPLUS KEYWDS HAPATITIS B CORE PROTEIN HBC HBCAG, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR B.BOTTCHER,M.NASSAL REVDAT 2 18-DEC-19 6HTX 1 SCALE REVDAT 1 26-DEC-18 6HTX 0 JRNL AUTH B.BOTTCHER,M.NASSAL JRNL TITL STRUCTURE OF MUTANT HEPATITIS B CORE PROTEIN CAPSIDS WITH JRNL TITL 2 PREMATURE SECRETION PHENOTYPE. JRNL REF J. MOL. BIOL. V. 430 4941 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30539760 JRNL DOI 10.1016/J.JMB.2018.10.018 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, RELION, COOT, UCSF CHIMERA, REMARK 3 PHENIX, RELION, RELION, RELION, RELION, REMARK 3 PHENIX, COOT REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1QGT REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.660 REMARK 3 NUMBER OF PARTICLES : 104105 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6HTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012306. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : SAMPLES WERE VITRIFIED WITH AN REMARK 245 FEI VITROBOT IV, WHICH WAS REMARK 245 OPERATED AT 100% HUMIDITY AT REMARK 245 4C. 2.5-3.5 UL OF SAMPLE WERE REMARK 245 APPLIED TO GRIDS (QUANTIFOIL REMARK 245 ULTRAUFOIL R1.3/1.2 300 MESH REMARK 245 GOLD GRIDS ) THAT WERE GLOW REMARK 245 DISCHARGED IN AIR FOR 1-2 MIN. REMARK 245 THE SAMPLE WAS INCUBATED FOR 30 REMARK 245 S BEFORE BLOTTING FOR 3 S WITH REMARK 245 A BLOT FORCE BETWEEN 0 AND 5. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.70 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5400 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 32.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.499945 -0.809078 -0.308948 429.93185 REMARK 350 BIOMT2 2 0.809046 0.309017 0.499953 -164.21043 REMARK 350 BIOMT3 2 -0.309031 -0.499902 0.809072 265.66762 REMARK 350 BIOMT1 3 -0.309162 -0.500069 -0.808919 695.65550 REMARK 350 BIOMT2 3 0.499986 -0.809017 0.309039 265.70175 REMARK 350 BIOMT3 3 -0.808970 -0.308905 0.500145 429.83890 REMARK 350 BIOMT1 4 -0.309162 0.499986 -0.808970 429.94990 REMARK 350 BIOMT2 4 -0.500069 -0.809017 -0.308905 695.61251 REMARK 350 BIOMT3 4 -0.808919 0.309039 0.500145 265.63471 REMARK 350 BIOMT1 5 0.499945 0.809046 -0.309031 0.01116 REMARK 350 BIOMT2 5 -0.809078 0.309017 -0.499902 531.39980 REMARK 350 BIOMT3 5 -0.308948 0.499953 0.809072 -0.02034 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000179 531.37522 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000177 531.36184 REMARK 350 BIOMT3 6 0.000179 0.000177 1.000000 -0.09479 REMARK 350 BIOMT1 7 -0.500000 0.808988 0.309093 101.49103 REMARK 350 BIOMT2 7 -0.809101 -0.309106 -0.499810 695.61940 REMARK 350 BIOMT3 7 -0.308798 -0.499992 0.809106 265.62081 REMARK 350 BIOMT1 8 0.309017 0.500014 0.809009 -164.20316 REMARK 350 BIOMT2 8 -0.500130 0.808962 -0.308951 265.73636 REMARK 350 BIOMT3 8 -0.808937 -0.309138 0.500055 429.91602 REMARK 350 BIOMT1 9 0.309017 -0.499931 0.809060 101.47299 REMARK 350 BIOMT2 9 0.499926 0.809072 0.308994 -164.20353 REMARK 350 BIOMT3 9 -0.809063 0.308985 0.499945 265.74044 REMARK 350 BIOMT1 10 -0.500000 -0.808956 0.309176 531.36407 REMARK 350 BIOMT2 10 0.809023 -0.308928 0.500045 -0.03795 REMARK 350 BIOMT3 10 -0.309002 0.500153 0.808928 -0.02086 REMARK 350 BIOMT1 11 1.000000 0.000121 -0.000179 0.01547 REMARK 350 BIOMT2 11 0.000121 -1.000000 0.000000 531.37678 REMARK 350 BIOMT3 11 -0.000179 0.000000 -1.000000 531.43727 REMARK 350 BIOMT1 12 0.500098 -0.808951 -0.309032 429.87975 REMARK 350 BIOMT2 12 -0.808985 -0.309115 -0.499991 695.63930 REMARK 350 BIOMT3 12 0.308941 0.500047 -0.809017 265.69253 REMARK 350 BIOMT1 13 -0.308956 -0.500112 -0.808971 695.62604 REMARK 350 BIOMT2 13 -0.500024 0.808956 -0.309137 265.75933 REMARK 350 BIOMT3 13 0.809025 0.308995 -0.500000 101.47358 REMARK 350 BIOMT1 14 -0.309078 0.499833 -0.809097 430.00201 REMARK 350 BIOMT2 14 0.500032 0.809078 0.308807 -164.18362 REMARK 350 BIOMT3 14 0.808974 -0.309129 -0.500000 265.72543 REMARK 350 BIOMT1 15 0.499902 0.808994 -0.309236 0.09103 REMARK 350 BIOMT2 15 0.809138 -0.308919 0.499864 -0.02301 REMARK 350 BIOMT3 15 0.308858 -0.500098 -0.809017 531.45760 REMARK 350 BIOMT1 16 -1.000000 -0.000121 0.000000 531.45509 REMARK 350 BIOMT2 16 -0.000121 1.000000 -0.000177 0.07934 REMARK 350 BIOMT3 16 0.000000 -0.000177 -1.000000 531.43673 REMARK 350 BIOMT1 17 -0.500043 0.809040 0.308887 101.54315 REMARK 350 BIOMT2 17 0.809040 0.309204 0.499847 -164.23032 REMARK 350 BIOMT3 17 0.308887 0.499847 -0.809161 265.79825 REMARK 350 BIOMT1 18 0.309102 0.500167 0.808881 -164.23260 REMARK 350 BIOMT2 18 0.500167 -0.808902 0.309049 265.62052 REMARK 350 BIOMT3 18 0.808881 0.309049 -0.500200 101.55071 REMARK 350 BIOMT1 19 0.309223 -0.499888 0.809007 101.42089 REMARK 350 BIOMT2 19 -0.499888 -0.809132 -0.308896 695.59260 REMARK 350 BIOMT3 19 0.809007 -0.308896 -0.500090 265.67863 REMARK 350 BIOMT1 20 -0.499847 -0.809083 0.309091 531.37953 REMARK 350 BIOMT2 20 -0.809083 0.308830 -0.500008 531.47913 REMARK 350 BIOMT3 20 0.309091 -0.500008 -0.808984 531.36281 REMARK 350 BIOMT1 21 -0.000029 -1.000000 0.000028 531.41620 REMARK 350 BIOMT2 21 0.000001 0.000028 1.000000 0.00195 REMARK 350 BIOMT3 21 -1.000000 0.000029 0.000001 531.39825 REMARK 350 BIOMT1 22 -0.809069 -0.309007 -0.499921 695.62158 REMARK 350 BIOMT2 22 -0.309007 -0.499894 0.809086 265.66539 REMARK 350 BIOMT3 22 -0.499921 0.809086 0.308963 101.46189 REMARK 350 BIOMT1 23 -0.500000 0.809023 -0.309002 265.70629 REMARK 350 BIOMT2 23 -0.808956 -0.308928 0.500153 429.84902 REMARK 350 BIOMT3 23 0.309176 0.500045 0.808928 -164.24909 REMARK 350 BIOMT1 24 0.500055 0.809011 0.308943 -164.20135 REMARK 350 BIOMT2 24 -0.808933 0.309017 0.500136 265.65664 REMARK 350 BIOMT3 24 0.309147 -0.500009 0.808962 101.46886 REMARK 350 BIOMT1 25 0.809054 -0.309026 0.499934 0.01640 REMARK 350 BIOMT2 25 -0.308970 0.499963 0.809058 -0.00345 REMARK 350 BIOMT3 25 -0.499968 -0.809037 0.309017 531.40256 REMARK 350 BIOMT1 26 0.000029 1.000000 -0.000149 0.03890 REMARK 350 BIOMT2 26 0.000178 0.000149 1.000000 -0.07737 REMARK 350 BIOMT3 26 1.000000 -0.000029 -0.000178 0.03849 REMARK 350 BIOMT1 27 0.809107 0.309068 0.499823 -164.19868 REMARK 350 BIOMT2 27 -0.308821 -0.500000 0.809092 265.64242 REMARK 350 BIOMT3 27 0.499976 -0.808997 -0.309107 429.92772 REMARK 350 BIOMT1 28 0.500098 -0.808985 0.308941 265.69670 REMARK 350 BIOMT2 28 -0.808951 -0.309115 0.500047 429.92528 REMARK 350 BIOMT3 28 -0.309032 -0.499991 -0.809017 695.60957 REMARK 350 BIOMT1 29 -0.499957 -0.809049 -0.309003 695.62424 REMARK 350 BIOMT2 29 -0.809049 0.309008 0.499955 265.73788 REMARK 350 BIOMT3 29 -0.309003 0.499955 -0.809050 429.92075 REMARK 350 BIOMT1 30 -0.809017 0.308966 -0.500032 531.43869 REMARK 350 BIOMT2 30 -0.308979 0.500144 0.808943 -0.01838 REMARK 350 BIOMT3 30 0.500023 0.808948 -0.309161 0.03418 REMARK 350 BIOMT1 31 -0.000150 1.000000 -0.000028 0.05436 REMARK 350 BIOMT2 31 -0.000178 -0.000028 -1.000000 531.45416 REMARK 350 BIOMT3 31 -1.000000 -0.000150 0.000178 531.39877 REMARK 350 BIOMT1 32 0.808980 0.309153 0.499977 -164.22814 REMARK 350 BIOMT2 32 0.308919 0.500037 -0.809031 265.71446 REMARK 350 BIOMT3 32 -0.500121 0.808942 0.309017 101.53901 REMARK 350 BIOMT1 33 0.500055 -0.808933 0.309147 265.63948 REMARK 350 BIOMT2 33 0.809011 0.309017 -0.500009 101.48369 REMARK 350 BIOMT3 33 0.308943 0.500136 0.808962 -164.21996 REMARK 350 BIOMT1 34 -0.500000 -0.809101 -0.308798 695.59478 REMARK 350 BIOMT2 34 0.808988 -0.309106 -0.499992 265.72320 REMARK 350 BIOMT3 34 0.309093 -0.499810 0.809106 101.39174 REMARK 350 BIOMT1 35 -0.809144 0.308881 -0.499878 531.45415 REMARK 350 BIOMT2 35 0.308881 -0.500106 -0.809003 531.45956 REMARK 350 BIOMT3 35 -0.499878 -0.809003 0.309250 531.30775 REMARK 350 BIOMT1 36 0.000150 -1.000000 0.000149 531.33633 REMARK 350 BIOMT2 36 -0.000001 -0.000149 -1.000000 531.43922 REMARK 350 BIOMT3 36 1.000000 0.000150 -0.000001 -0.05630 REMARK 350 BIOMT1 37 -0.809017 -0.309213 -0.499879 695.65103 REMARK 350 BIOMT2 37 0.308909 0.499856 -0.809147 265.79569 REMARK 350 BIOMT3 37 0.500066 -0.809031 -0.308873 429.85059 REMARK 350 BIOMT1 38 -0.500153 0.808896 -0.309086 265.80331 REMARK 350 BIOMT2 38 0.808896 0.309026 -0.500190 101.55996 REMARK 350 BIOMT3 38 -0.309086 -0.500190 -0.808873 695.63869 REMARK 350 BIOMT1 39 0.499902 0.809138 0.308858 -164.17188 REMARK 350 BIOMT2 39 0.808994 -0.308919 -0.500098 265.70024 REMARK 350 BIOMT3 39 -0.309236 0.499864 -0.809017 429.99787 REMARK 350 BIOMT1 40 0.809107 -0.308821 0.499976 -0.06346 REMARK 350 BIOMT2 40 0.309068 -0.500000 -0.808997 531.38023 REMARK 350 BIOMT3 40 0.499823 0.809092 -0.309107 0.03472 REMARK 350 BIOMT1 41 -0.000029 0.000001 -1.000000 531.41372 REMARK 350 BIOMT2 41 -1.000000 0.000028 0.000029 531.40074 REMARK 350 BIOMT3 41 0.000028 1.000000 0.000001 -0.01742 REMARK 350 BIOMT1 42 0.309017 0.499926 -0.809063 265.73342 REMARK 350 BIOMT2 42 -0.499931 0.809072 0.308985 101.47201 REMARK 350 BIOMT3 42 0.809060 0.308994 0.499945 -164.21550 REMARK 350 BIOMT1 43 0.808980 0.308919 -0.500121 101.55483 REMARK 350 BIOMT2 43 0.309153 0.500037 0.808942 -164.23479 REMARK 350 BIOMT3 43 0.499977 -0.809031 0.309017 265.70431 REMARK 350 BIOMT1 44 0.808927 -0.309055 -0.500122 265.76719 REMARK 350 BIOMT2 44 0.309125 -0.500000 0.808976 101.47811 REMARK 350 BIOMT3 44 -0.500079 -0.809003 -0.308927 695.60743 REMARK 350 BIOMT1 45 0.308932 -0.499976 -0.809064 531.43459 REMARK 350 BIOMT2 45 -0.499976 -0.809023 0.309040 531.40451 REMARK 350 BIOMT3 45 -0.809064 0.309040 -0.499910 531.38238 REMARK 350 BIOMT1 46 -0.000150 -0.000178 -1.000000 531.49358 REMARK 350 BIOMT2 46 1.000000 -0.000028 -0.000150 0.04044 REMARK 350 BIOMT3 46 -0.000028 -1.000000 0.000178 531.35935 REMARK 350 BIOMT1 47 0.308811 0.499968 -0.809115 265.79064 REMARK 350 BIOMT2 47 0.499968 -0.809011 -0.309083 429.93698 REMARK 350 BIOMT3 47 -0.809115 -0.309083 -0.499800 695.60509 REMARK 350 BIOMT1 48 0.808927 0.309125 -0.500079 101.50274 REMARK 350 BIOMT2 48 -0.309055 -0.500000 -0.809003 695.62387 REMARK 350 BIOMT3 48 -0.500122 0.808976 -0.308927 265.71475 REMARK 350 BIOMT1 49 0.809054 -0.308970 -0.499968 265.67016 REMARK 350 BIOMT2 49 -0.309026 0.499963 -0.809037 429.93087 REMARK 350 BIOMT3 49 0.499934 0.809058 0.309017 -164.21783 REMARK 350 BIOMT1 50 0.309017 -0.500130 -0.808937 531.41911 REMARK 350 BIOMT2 50 0.500014 0.808962 -0.309138 0.03667 REMARK 350 BIOMT3 50 0.809009 -0.308951 0.500055 -0.04044 REMARK 350 BIOMT1 51 0.000150 -0.000001 1.000000 -0.02303 REMARK 350 BIOMT2 51 -1.000000 -0.000149 0.000150 531.41566 REMARK 350 BIOMT3 51 0.000149 -1.000000 -0.000001 531.35989 REMARK 350 BIOMT1 52 -0.308956 -0.500024 0.809025 265.70937 REMARK 350 BIOMT2 52 -0.500112 0.808956 0.308995 101.54826 REMARK 350 BIOMT3 52 -0.808971 -0.309137 -0.500000 695.63423 REMARK 350 BIOMT1 53 -0.809017 -0.308979 0.500023 429.92016 REMARK 350 BIOMT2 53 0.308966 0.500143 0.808948 -164.21489 REMARK 350 BIOMT3 53 -0.500032 0.808943 -0.309161 265.76157 REMARK 350 BIOMT1 54 -0.808965 0.309115 0.500024 265.67561 REMARK 350 BIOMT2 54 0.309115 -0.499819 0.809091 101.40185 REMARK 350 BIOMT3 54 0.500024 0.809091 0.308784 -164.18869 REMARK 350 BIOMT1 55 -0.308872 0.500074 0.809026 -0.04389 REMARK 350 BIOMT2 55 -0.499870 -0.809017 0.309227 531.32517 REMARK 350 BIOMT3 55 0.809153 -0.308897 0.499855 -0.03990 REMARK 350 BIOMT1 56 0.000029 0.000178 1.000000 -0.03848 REMARK 350 BIOMT2 56 1.000000 0.000149 -0.000029 -0.03889 REMARK 350 BIOMT3 56 -0.000149 1.000000 -0.000178 0.07739 REMARK 350 BIOMT1 57 -0.308872 -0.499870 0.809153 265.61235 REMARK 350 BIOMT2 57 0.500074 -0.809017 -0.308897 429.86071 REMARK 350 BIOMT3 57 0.809026 0.309227 0.499855 -164.24461 REMARK 350 BIOMT1 58 -0.808890 -0.309064 0.500177 429.86805 REMARK 350 BIOMT2 58 -0.309064 -0.500181 -0.808887 695.64376 REMARK 350 BIOMT3 58 0.500177 -0.808887 0.309071 265.59859 REMARK 350 BIOMT1 59 -0.809017 0.308909 0.500066 265.73282 REMARK 350 BIOMT2 59 -0.309213 0.499856 -0.809031 430.00713 REMARK 350 BIOMT3 59 -0.499879 -0.809147 -0.308873 695.57830 REMARK 350 BIOMT1 60 -0.309078 0.500032 0.808974 0.03598 REMARK 350 BIOMT2 60 0.499833 0.809078 -0.309129 0.05161 REMARK 350 BIOMT3 60 -0.809097 0.308807 -0.500000 531.47717 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 152 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 SER B 155 REMARK 465 PRO B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 ARG B 159 REMARK 465 THR B 160 REMARK 465 PRO B 161 REMARK 465 SER B 162 REMARK 465 PRO B 163 REMARK 465 ARG B 164 REMARK 465 ARG B 165 REMARK 465 ARG B 166 REMARK 465 ARG B 167 REMARK 465 SER B 168 REMARK 465 GLN B 169 REMARK 465 SER B 170 REMARK 465 PRO B 171 REMARK 465 ARG B 172 REMARK 465 ARG B 173 REMARK 465 ARG B 174 REMARK 465 ARG B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 GLU B 180 REMARK 465 SER B 181 REMARK 465 GLN B 182 REMARK 465 CYS B 183 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 ARG A 152 REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 SER A 155 REMARK 465 PRO A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ARG A 159 REMARK 465 THR A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 PRO A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 167 REMARK 465 SER A 168 REMARK 465 GLN A 169 REMARK 465 SER A 170 REMARK 465 PRO A 171 REMARK 465 ARG A 172 REMARK 465 ARG A 173 REMARK 465 ARG A 174 REMARK 465 ARG A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 GLN A 182 REMARK 465 CYS A 183 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 VAL C 149 REMARK 465 ARG C 150 REMARK 465 ARG C 151 REMARK 465 ARG C 152 REMARK 465 GLY C 153 REMARK 465 ARG C 154 REMARK 465 SER C 155 REMARK 465 PRO C 156 REMARK 465 ARG C 157 REMARK 465 ARG C 158 REMARK 465 ARG C 159 REMARK 465 THR C 160 REMARK 465 PRO C 161 REMARK 465 SER C 162 REMARK 465 PRO C 163 REMARK 465 ARG C 164 REMARK 465 ARG C 165 REMARK 465 ARG C 166 REMARK 465 ARG C 167 REMARK 465 SER C 168 REMARK 465 GLN C 169 REMARK 465 SER C 170 REMARK 465 PRO C 171 REMARK 465 ARG C 172 REMARK 465 ARG C 173 REMARK 465 ARG C 174 REMARK 465 ARG C 175 REMARK 465 SER C 176 REMARK 465 GLN C 177 REMARK 465 SER C 178 REMARK 465 ARG C 179 REMARK 465 GLU C 180 REMARK 465 SER C 181 REMARK 465 GLN C 182 REMARK 465 CYS C 183 REMARK 465 ARG D 152 REMARK 465 GLY D 153 REMARK 465 ARG D 154 REMARK 465 SER D 155 REMARK 465 PRO D 156 REMARK 465 ARG D 157 REMARK 465 ARG D 158 REMARK 465 ARG D 159 REMARK 465 THR D 160 REMARK 465 PRO D 161 REMARK 465 SER D 162 REMARK 465 PRO D 163 REMARK 465 ARG D 164 REMARK 465 ARG D 165 REMARK 465 ARG D 166 REMARK 465 ARG D 167 REMARK 465 SER D 168 REMARK 465 GLN D 169 REMARK 465 SER D 170 REMARK 465 PRO D 171 REMARK 465 ARG D 172 REMARK 465 ARG D 173 REMARK 465 ARG D 174 REMARK 465 ARG D 175 REMARK 465 SER D 176 REMARK 465 GLN D 177 REMARK 465 SER D 178 REMARK 465 ARG D 179 REMARK 465 GLU D 180 REMARK 465 SER D 181 REMARK 465 GLN D 182 REMARK 465 CYS D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 35 OE2 GLU C 14 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 37 -61.30 -106.46 REMARK 500 CYS B 48 -62.93 -98.96 REMARK 500 THR B 91 -62.95 -100.61 REMARK 500 ILE A 3 80.27 57.85 REMARK 500 PRO A 45 46.39 -88.15 REMARK 500 CYS A 48 -61.45 -97.19 REMARK 500 ASP A 78 74.54 58.84 REMARK 500 THR A 91 -62.53 -96.63 REMARK 500 CYS C 48 -110.39 60.03 REMARK 500 THR C 91 -63.33 -96.26 REMARK 500 ILE D 3 83.06 56.90 REMARK 500 CYS D 48 -61.47 -98.61 REMARK 500 THR D 91 -63.20 -104.62 REMARK 500 PHE D 110 -22.08 66.44 REMARK 500 ARG D 150 -117.06 50.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0271 RELATED DB: EMDB REMARK 900 WT HEPATITIS B CORE PROTEIN CAPSID DBREF 6HTX B 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 6HTX A 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 6HTX C 1 183 UNP P03146 CAPSD_HBVD3 1 183 DBREF 6HTX D 1 183 UNP P03146 CAPSD_HBVD3 1 183 SEQRES 1 B 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 B 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 B 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 B 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 B 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 B 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 B 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 B 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 B 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 B 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 B 183 CYS SEQRES 1 A 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 A 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 A 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 A 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 A 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 A 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 A 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 A 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 A 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 A 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 A 183 CYS SEQRES 1 C 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 C 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 C 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 C 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 C 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 C 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 C 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 C 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 C 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 C 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 C 183 CYS SEQRES 1 D 183 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 D 183 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 D 183 VAL ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 D 183 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 D 183 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 D 183 MET THR LEU ALA THR TRP VAL GLY VAL ASN LEU GLU ASP SEQRES 7 D 183 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 D 183 ASN MET GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 D 183 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL ILE GLU SEQRES 10 D 183 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 D 183 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 D 183 PRO GLU THR THR VAL VAL ARG ARG ARG GLY ARG SER PRO SEQRES 13 D 183 ARG ARG ARG THR PRO SER PRO ARG ARG ARG ARG SER GLN SEQRES 14 D 183 SER PRO ARG ARG ARG ARG SER GLN SER ARG GLU SER GLN SEQRES 15 D 183 CYS HELIX 1 AA1 TYR B 6 GLY B 10 5 5 HELIX 2 AA2 PRO B 20 PHE B 24 5 5 HELIX 3 AA3 SER B 26 GLU B 43 1 18 HELIX 4 AA4 SER B 49 LEU B 76 1 28 HELIX 5 AA5 ASP B 78 THR B 91 1 14 HELIX 6 AA6 THR B 91 GLY B 111 1 21 HELIX 7 AA7 GLY B 111 ARG B 127 1 17 HELIX 8 AA8 PRO B 129 ARG B 133 5 5 HELIX 9 AA9 TYR A 6 GLY A 10 5 5 HELIX 10 AB1 PRO A 20 PHE A 24 5 5 HELIX 11 AB2 SER A 26 GLU A 43 1 18 HELIX 12 AB3 SER A 49 LEU A 76 1 28 HELIX 13 AB4 ASP A 78 THR A 91 1 14 HELIX 14 AB5 THR A 91 GLY A 111 1 21 HELIX 15 AB6 GLY A 111 THR A 128 1 18 HELIX 16 AB7 TYR C 6 GLY C 10 5 5 HELIX 17 AB8 THR C 12 SER C 17 1 6 HELIX 18 AB9 PRO C 20 PHE C 24 5 5 HELIX 19 AC1 SER C 26 GLU C 43 1 18 HELIX 20 AC2 SER C 49 LEU C 76 1 28 HELIX 21 AC3 ASP C 78 THR C 91 1 14 HELIX 22 AC4 THR C 91 GLY C 111 1 21 HELIX 23 AC5 GLY C 111 THR C 128 1 18 HELIX 24 AC6 PRO C 129 ARG C 133 5 5 HELIX 25 AC7 TYR D 6 GLY D 10 5 5 HELIX 26 AC8 LEU D 15 LEU D 19 5 5 HELIX 27 AC9 PRO D 20 PHE D 24 5 5 HELIX 28 AD1 SER D 26 GLU D 43 1 18 HELIX 29 AD2 SER D 49 LEU D 76 1 28 HELIX 30 AD3 ASP D 78 THR D 91 1 14 HELIX 31 AD4 THR D 91 THR D 109 1 19 HELIX 32 AD5 GLY D 111 THR D 128 1 18 SSBOND 1 CYS B 61 CYS A 61 1555 1555 2.05 SSBOND 2 CYS C 61 CYS D 61 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000