data_6I3S # _entry.id 6I3S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6I3S WWPDB D_1200012776 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6I3S _pdbx_database_status.recvd_initial_deposition_date 2018-11-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bader, G.' 1 0000-0002-8410-3415 'Kessler, D.' 2 0000-0001-6808-9011 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev ChemMedChem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1860-7187 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 88 _citation.page_last 93 _citation.title ;Targeted Synthesis of Complex Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-ones by Intramolecular Cyclization of Azomethine Ylides: Highly Potent MDM2-p53 Inhibitors. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cmdc.201800617 _citation.pdbx_database_id_PubMed 30458062 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gollner, A.' 1 ? primary 'Weinstabl, H.' 2 ? primary 'Fuchs, J.E.' 3 ? primary 'Rudolph, D.' 4 ? primary 'Garavel, G.' 5 ? primary 'Hofbauer, K.S.' 6 ? primary 'Karolyi-Oezguer, J.' 7 ? primary 'Gmaschitz, G.' 8 ? primary 'Hela, W.' 9 ? primary 'Kerres, N.' 10 ? primary 'Grondal, E.' 11 ? primary 'Werni, P.' 12 ? primary 'Ramharter, J.' 13 ? primary 'Broeker, J.' 14 ? primary 'McConnell, D.B.' 15 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6I3S _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.064 _cell.length_a_esd ? _cell.length_b 56.064 _cell.length_b_esd ? _cell.length_c 105.119 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 11011.923 1 2.3.2.27 ? ? ? 2 non-polymer syn ;(3~{S},3'~{R},3'~{a}~{S},6'~{a}~{R})-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-(cyclopropylmethyl)spiro[1~{H}-indole-3,2'-3~{a},6~{a}-dihydro-3~{H}-pyrrolo[3,4-b]pyrrole]-2,4'-dione ; 458.312 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 47 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVN ; _entity_poly.pdbx_seq_one_letter_code_can ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 PRO n 1 4 ALA n 1 5 SER n 1 6 GLU n 1 7 GLN n 1 8 GLU n 1 9 THR n 1 10 LEU n 1 11 VAL n 1 12 ARG n 1 13 PRO n 1 14 LYS n 1 15 PRO n 1 16 LEU n 1 17 LEU n 1 18 LEU n 1 19 LYS n 1 20 LEU n 1 21 LEU n 1 22 LYS n 1 23 SER n 1 24 VAL n 1 25 GLY n 1 26 ALA n 1 27 GLN n 1 28 LYS n 1 29 ASP n 1 30 THR n 1 31 TYR n 1 32 THR n 1 33 MET n 1 34 LYS n 1 35 GLU n 1 36 VAL n 1 37 LEU n 1 38 PHE n 1 39 TYR n 1 40 LEU n 1 41 GLY n 1 42 GLN n 1 43 TYR n 1 44 ILE n 1 45 MET n 1 46 THR n 1 47 LYS n 1 48 ARG n 1 49 LEU n 1 50 TYR n 1 51 ASP n 1 52 GLU n 1 53 LYS n 1 54 GLN n 1 55 GLN n 1 56 HIS n 1 57 ILE n 1 58 VAL n 1 59 TYR n 1 60 CYS n 1 61 SER n 1 62 ASN n 1 63 ASP n 1 64 LEU n 1 65 LEU n 1 66 GLY n 1 67 ASP n 1 68 LEU n 1 69 PHE n 1 70 GLY n 1 71 VAL n 1 72 PRO n 1 73 SER n 1 74 PHE n 1 75 SER n 1 76 VAL n 1 77 LYS n 1 78 GLU n 1 79 HIS n 1 80 ARG n 1 81 LYS n 1 82 ILE n 1 83 TYR n 1 84 THR n 1 85 MET n 1 86 ILE n 1 87 TYR n 1 88 ARG n 1 89 ASN n 1 90 LEU n 1 91 VAL n 1 92 VAL n 1 93 VAL n 1 94 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 94 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MDM2_HUMAN _struct_ref.pdbx_db_accession Q00987 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVN ; _struct_ref.pdbx_align_begin 18 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6I3S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00987 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 18 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 H28 non-polymer . ;(3~{S},3'~{R},3'~{a}~{S},6'~{a}~{R})-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-(cyclopropylmethyl)spiro[1~{H}-indole-3,2'-3~{a},6~{a}-dihydro-3~{H}-pyrrolo[3,4-b]pyrrole]-2,4'-dione ; ? 'C23 H18 Cl2 F N3 O2' 458.312 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6I3S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.250 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.480 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.10 M (NH4)2SO4, 0.10 M Na acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.000 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-12-05 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6I3S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.770 _reflns.d_resolution_low 48.550 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9499 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 23.100 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.92 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.800 _reflns_shell.d_res_low 2.050 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.600 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 23.700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.0300 _refine.aniso_B[1][2] 0.0200 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0300 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.0500 _refine.B_iso_max 73.820 _refine.B_iso_mean 18.2080 _refine.B_iso_min 9.500 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9280 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6I3S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7700 _refine.ls_d_res_low 48.5500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8824 _refine.ls_number_reflns_R_free 982 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.9600 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1933 _refine.ls_R_factor_R_free 0.2392 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1884 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1410 _refine.pdbx_overall_ESU_R_Free 0.1400 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.0720 _refine.overall_SU_ML 0.0900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7700 _refine_hist.d_res_low 48.5500 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 873 _refine_hist.pdbx_number_residues_total 94 _refine_hist.pdbx_B_iso_mean_ligand 25.90 _refine_hist.pdbx_B_iso_mean_solvent 40.34 _refine_hist.pdbx_number_atoms_protein 774 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.020 846 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 574 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.517 2.062 1156 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.144 3.000 1399 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.549 5.000 97 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 43.011 23.939 33 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.732 15.000 148 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 25.184 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.089 0.200 133 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.021 892 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 164 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.7700 _refine_ls_shell.d_res_low 1.8160 _refine_ls_shell.number_reflns_all 595 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_R_work 525 _refine_ls_shell.percent_reflns_obs 95.2000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3480 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2950 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6I3S _struct.title 'Crystal structure of MDM2 in complex with compound 13.' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase Mdm2 (E.C.2.3.2.27)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6I3S _struct_keywords.text 'Inhibitor, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 3 ? GLU A 8 ? PRO A 20 GLU A 25 5 ? 6 HELX_P HELX_P2 AA2 LYS A 14 ? SER A 23 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P3 AA3 MET A 33 ? LYS A 47 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P4 AA4 ASP A 63 ? GLY A 70 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P5 AA5 GLU A 78 ? ARG A 88 ? GLU A 95 ARG A 105 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 31 ? THR A 32 ? TYR A 48 THR A 49 AA1 2 LEU A 10 ? PRO A 13 ? LEU A 27 PRO A 30 AA1 3 LEU A 90 ? VAL A 93 ? LEU A 107 VAL A 110 AA2 1 TYR A 50 ? ASP A 51 ? TYR A 67 ASP A 68 AA2 2 ILE A 57 ? TYR A 59 ? ILE A 74 TYR A 76 AA2 3 SER A 73 ? SER A 75 ? SER A 90 SER A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 31 ? O TYR A 48 N VAL A 11 ? N VAL A 28 AA1 2 3 N LEU A 10 ? N LEU A 27 O VAL A 93 ? O VAL A 110 AA2 1 2 N ASP A 51 ? N ASP A 68 O ILE A 57 ? O ILE A 74 AA2 2 3 N VAL A 58 ? N VAL A 75 O PHE A 74 ? O PHE A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A H28 201 ? 11 'binding site for residue H28 A 201' AC2 Software A GOL 202 ? 4 'binding site for residue GOL A 202' AC3 Software A SO4 203 ? 7 'binding site for residue SO4 A 203' AC4 Software A SO4 204 ? 8 'binding site for residue SO4 A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 LEU A 37 ? LEU A 54 . ? 1_555 ? 2 AC1 11 GLY A 41 ? GLY A 58 . ? 1_555 ? 3 AC1 11 ILE A 44 ? ILE A 61 . ? 1_555 ? 4 AC1 11 MET A 45 ? MET A 62 . ? 1_555 ? 5 AC1 11 PHE A 69 ? PHE A 86 . ? 1_555 ? 6 AC1 11 VAL A 76 ? VAL A 93 . ? 1_555 ? 7 AC1 11 HIS A 79 ? HIS A 96 . ? 1_555 ? 8 AC1 11 ILE A 82 ? ILE A 99 . ? 1_555 ? 9 AC1 11 TYR A 83 ? TYR A 100 . ? 1_555 ? 10 AC1 11 HOH F . ? HOH A 315 . ? 1_555 ? 11 AC1 11 HOH F . ? HOH A 320 . ? 1_555 ? 12 AC2 4 ILE A 2 ? ILE A 19 . ? 1_555 ? 13 AC2 4 HIS A 79 ? HIS A 96 . ? 1_555 ? 14 AC2 4 TYR A 83 ? TYR A 100 . ? 1_555 ? 15 AC2 4 HOH F . ? HOH A 311 . ? 1_555 ? 16 AC3 7 GLN A 1 ? GLN A 18 . ? 1_555 ? 17 AC3 7 LYS A 77 ? LYS A 94 . ? 1_555 ? 18 AC3 7 GLU A 78 ? GLU A 95 . ? 1_555 ? 19 AC3 7 HIS A 79 ? HIS A 96 . ? 1_555 ? 20 AC3 7 ARG A 80 ? ARG A 97 . ? 1_555 ? 21 AC3 7 LYS A 81 ? LYS A 98 . ? 1_555 ? 22 AC3 7 HOH F . ? HOH A 317 . ? 1_555 ? 23 AC4 8 ILE A 2 ? ILE A 19 . ? 6_555 ? 24 AC4 8 PRO A 3 ? PRO A 20 . ? 6_555 ? 25 AC4 8 ALA A 4 ? ALA A 21 . ? 6_555 ? 26 AC4 8 LYS A 34 ? LYS A 51 . ? 12_555 ? 27 AC4 8 LYS A 34 ? LYS A 51 . ? 1_555 ? 28 AC4 8 HOH F . ? HOH A 313 . ? 1_555 ? 29 AC4 8 HOH F . ? HOH A 330 . ? 6_555 ? 30 AC4 8 HOH F . ? HOH A 336 . ? 1_555 ? # _atom_sites.entry_id 6I3S _atom_sites.fract_transf_matrix[1][1] 0.017837 _atom_sites.fract_transf_matrix[1][2] 0.010298 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009513 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 18 18 GLN GLN A . n A 1 2 ILE 2 19 19 ILE ILE A . n A 1 3 PRO 3 20 20 PRO PRO A . n A 1 4 ALA 4 21 21 ALA ALA A . n A 1 5 SER 5 22 22 SER SER A . n A 1 6 GLU 6 23 23 GLU GLU A . n A 1 7 GLN 7 24 24 GLN GLN A . n A 1 8 GLU 8 25 25 GLU GLU A . n A 1 9 THR 9 26 26 THR THR A . n A 1 10 LEU 10 27 27 LEU LEU A . n A 1 11 VAL 11 28 28 VAL VAL A . n A 1 12 ARG 12 29 29 ARG ARG A . n A 1 13 PRO 13 30 30 PRO PRO A . n A 1 14 LYS 14 31 31 LYS LYS A . n A 1 15 PRO 15 32 32 PRO PRO A . n A 1 16 LEU 16 33 33 LEU LEU A . n A 1 17 LEU 17 34 34 LEU LEU A . n A 1 18 LEU 18 35 35 LEU LEU A . n A 1 19 LYS 19 36 36 LYS LYS A . n A 1 20 LEU 20 37 37 LEU LEU A . n A 1 21 LEU 21 38 38 LEU LEU A . n A 1 22 LYS 22 39 39 LYS LYS A . n A 1 23 SER 23 40 40 SER SER A . n A 1 24 VAL 24 41 41 VAL VAL A . n A 1 25 GLY 25 42 42 GLY GLY A . n A 1 26 ALA 26 43 43 ALA ALA A . n A 1 27 GLN 27 44 44 GLN GLN A . n A 1 28 LYS 28 45 45 LYS LYS A . n A 1 29 ASP 29 46 46 ASP ASP A . n A 1 30 THR 30 47 47 THR THR A . n A 1 31 TYR 31 48 48 TYR TYR A . n A 1 32 THR 32 49 49 THR THR A . n A 1 33 MET 33 50 50 MET MET A . n A 1 34 LYS 34 51 51 LYS LYS A . n A 1 35 GLU 35 52 52 GLU GLU A . n A 1 36 VAL 36 53 53 VAL VAL A . n A 1 37 LEU 37 54 54 LEU LEU A . n A 1 38 PHE 38 55 55 PHE PHE A . n A 1 39 TYR 39 56 56 TYR TYR A . n A 1 40 LEU 40 57 57 LEU LEU A . n A 1 41 GLY 41 58 58 GLY GLY A . n A 1 42 GLN 42 59 59 GLN GLN A . n A 1 43 TYR 43 60 60 TYR TYR A . n A 1 44 ILE 44 61 61 ILE ILE A . n A 1 45 MET 45 62 62 MET MET A . n A 1 46 THR 46 63 63 THR THR A . n A 1 47 LYS 47 64 64 LYS LYS A . n A 1 48 ARG 48 65 65 ARG ARG A . n A 1 49 LEU 49 66 66 LEU LEU A . n A 1 50 TYR 50 67 67 TYR TYR A . n A 1 51 ASP 51 68 68 ASP ASP A . n A 1 52 GLU 52 69 69 GLU GLU A . n A 1 53 LYS 53 70 70 LYS LYS A . n A 1 54 GLN 54 71 71 GLN GLN A . n A 1 55 GLN 55 72 72 GLN GLN A . n A 1 56 HIS 56 73 73 HIS HIS A . n A 1 57 ILE 57 74 74 ILE ILE A . n A 1 58 VAL 58 75 75 VAL VAL A . n A 1 59 TYR 59 76 76 TYR TYR A . n A 1 60 CYS 60 77 77 CYS CYS A . n A 1 61 SER 61 78 78 SER SER A . n A 1 62 ASN 62 79 79 ASN ASN A . n A 1 63 ASP 63 80 80 ASP ASP A . n A 1 64 LEU 64 81 81 LEU LEU A . n A 1 65 LEU 65 82 82 LEU LEU A . n A 1 66 GLY 66 83 83 GLY GLY A . n A 1 67 ASP 67 84 84 ASP ASP A . n A 1 68 LEU 68 85 85 LEU LEU A . n A 1 69 PHE 69 86 86 PHE PHE A . n A 1 70 GLY 70 87 87 GLY GLY A . n A 1 71 VAL 71 88 88 VAL VAL A . n A 1 72 PRO 72 89 89 PRO PRO A . n A 1 73 SER 73 90 90 SER SER A . n A 1 74 PHE 74 91 91 PHE PHE A . n A 1 75 SER 75 92 92 SER SER A . n A 1 76 VAL 76 93 93 VAL VAL A . n A 1 77 LYS 77 94 94 LYS LYS A . n A 1 78 GLU 78 95 95 GLU GLU A . n A 1 79 HIS 79 96 96 HIS HIS A . n A 1 80 ARG 80 97 97 ARG ARG A . n A 1 81 LYS 81 98 98 LYS LYS A . n A 1 82 ILE 82 99 99 ILE ILE A . n A 1 83 TYR 83 100 100 TYR TYR A . n A 1 84 THR 84 101 101 THR THR A . n A 1 85 MET 85 102 102 MET MET A . n A 1 86 ILE 86 103 103 ILE ILE A . n A 1 87 TYR 87 104 104 TYR TYR A . n A 1 88 ARG 88 105 105 ARG ARG A . n A 1 89 ASN 89 106 106 ASN ASN A . n A 1 90 LEU 90 107 107 LEU LEU A . n A 1 91 VAL 91 108 108 VAL VAL A . n A 1 92 VAL 92 109 109 VAL VAL A . n A 1 93 VAL 93 110 110 VAL VAL A . n A 1 94 ASN 94 111 111 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H28 1 201 1 H28 LIG A . C 3 GOL 1 202 1 GOL GOL A . D 4 SO4 1 203 2 SO4 SO4 A . E 4 SO4 1 204 3 SO4 SO4 A . F 5 HOH 1 301 36 HOH HOH A . F 5 HOH 2 302 22 HOH HOH A . F 5 HOH 3 303 7 HOH HOH A . F 5 HOH 4 304 23 HOH HOH A . F 5 HOH 5 305 14 HOH HOH A . F 5 HOH 6 306 39 HOH HOH A . F 5 HOH 7 307 19 HOH HOH A . F 5 HOH 8 308 6 HOH HOH A . F 5 HOH 9 309 32 HOH HOH A . F 5 HOH 10 310 30 HOH HOH A . F 5 HOH 11 311 51 HOH HOH A . F 5 HOH 12 312 34 HOH HOH A . F 5 HOH 13 313 16 HOH HOH A . F 5 HOH 14 314 3 HOH HOH A . F 5 HOH 15 315 2 HOH HOH A . F 5 HOH 16 316 20 HOH HOH A . F 5 HOH 17 317 44 HOH HOH A . F 5 HOH 18 318 50 HOH HOH A . F 5 HOH 19 319 41 HOH HOH A . F 5 HOH 20 320 27 HOH HOH A . F 5 HOH 21 321 9 HOH HOH A . F 5 HOH 22 322 53 HOH HOH A . F 5 HOH 23 323 47 HOH HOH A . F 5 HOH 24 324 35 HOH HOH A . F 5 HOH 25 325 26 HOH HOH A . F 5 HOH 26 326 15 HOH HOH A . F 5 HOH 27 327 28 HOH HOH A . F 5 HOH 28 328 24 HOH HOH A . F 5 HOH 29 329 45 HOH HOH A . F 5 HOH 30 330 8 HOH HOH A . F 5 HOH 31 331 5 HOH HOH A . F 5 HOH 32 332 43 HOH HOH A . F 5 HOH 33 333 46 HOH HOH A . F 5 HOH 34 334 13 HOH HOH A . F 5 HOH 35 335 38 HOH HOH A . F 5 HOH 36 336 17 HOH HOH A . F 5 HOH 37 337 11 HOH HOH A . F 5 HOH 38 338 10 HOH HOH A . F 5 HOH 39 339 52 HOH HOH A . F 5 HOH 40 340 12 HOH HOH A . F 5 HOH 41 341 40 HOH HOH A . F 5 HOH 42 342 42 HOH HOH A . F 5 HOH 43 343 48 HOH HOH A . F 5 HOH 44 344 25 HOH HOH A . F 5 HOH 45 345 49 HOH HOH A . F 5 HOH 46 346 33 HOH HOH A . F 5 HOH 47 347 37 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 480 ? 1 MORE -18 ? 1 'SSA (A^2)' 6080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-19 2 'Structure model' 1 1 2018-12-26 3 'Structure model' 1 2 2019-01-16 4 'Structure model' 1 3 2019-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' pdbx_database_proc 6 4 'Structure model' database_PDB_remark 7 4 'Structure model' reflns 8 4 'Structure model' reflns_shell # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation.year' 8 3 'Structure model' '_citation_author.identifier_ORCID' 9 4 'Structure model' '_database_PDB_remark.text' 10 4 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 11 4 'Structure model' '_reflns_shell.Rmerge_I_obs' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LYS 70 ? ? CD A LYS 70 ? ? 1.748 1.520 0.228 0.034 N 2 1 CB A GLN 71 ? ? CG A GLN 71 ? ? 1.699 1.521 0.178 0.027 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 71 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 84.13 _pdbx_validate_torsion.psi 68.36 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(3~{S},3'~{R},3'~{a}~{S},6'~{a}~{R})-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-(cyclopropylmethyl)spiro[1~{H}-indole-3,2'-3~{a},6~{a}-dihydro-3~{H}-pyrrolo[3,4-b]pyrrole]-2,4'-dione ; H28 3 GLYCEROL GOL 4 'SULFATE ION' SO4 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #