HEADER LIGASE 16-NOV-18 6I7A TITLE CO-CRYSTAL STRUCTURE OF HUMAN SPOP MATH DOMAIN (D140N) AND HUMAN BRD3 TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 9 CHAIN: B, D, F, H; COMPND 10 SYNONYM: RING3-LIKE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BRD3, KIAA0043, RING3L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGASE NUCLEAR CANCER UBIQUITINATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.OSTERTAG,G.M.POPOWICZ,M.SATTLER REVDAT 4 24-JAN-24 6I7A 1 REMARK REVDAT 3 15-JAN-20 6I7A 1 REMARK REVDAT 2 05-JUN-19 6I7A 1 JRNL REVDAT 1 08-MAY-19 6I7A 0 JRNL AUTH M.S.OSTERTAG,W.HUTWELKER,O.PLETTENBURG,M.SATTLER, JRNL AUTH 2 G.M.POPOWICZ JRNL TITL STRUCTURAL INSIGHTS INTO BET CLIENT RECOGNITION OF JRNL TITL 2 ENDOMETRIAL AND PROSTATE CANCER-ASSOCIATED SPOP MUTANTS. JRNL REF J.MOL.BIOL. V. 431 2213 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31026449 JRNL DOI 10.1016/J.JMB.2019.04.017 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9127 - 4.7208 1.00 3656 157 0.1920 0.2119 REMARK 3 2 4.7208 - 3.7553 1.00 3484 149 0.1624 0.1804 REMARK 3 3 3.7553 - 3.2830 1.00 3448 148 0.1879 0.2292 REMARK 3 4 3.2830 - 2.9839 1.00 3434 147 0.2076 0.2703 REMARK 3 5 2.9839 - 2.7706 1.00 3387 145 0.2303 0.3043 REMARK 3 6 2.7706 - 2.6077 1.00 3393 145 0.2397 0.2931 REMARK 3 7 2.6077 - 2.4773 1.00 3391 146 0.2415 0.2993 REMARK 3 8 2.4773 - 2.3697 1.00 3348 143 0.2514 0.3164 REMARK 3 9 2.3697 - 2.2786 1.00 3364 144 0.2497 0.2846 REMARK 3 10 2.2786 - 2.2000 1.00 3351 144 0.2697 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4506 REMARK 3 ANGLE : 0.559 6103 REMARK 3 CHIRALITY : 0.041 695 REMARK 3 PLANARITY : 0.004 771 REMARK 3 DIHEDRAL : 2.564 2886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.9389 13.1948 -0.6617 REMARK 3 T TENSOR REMARK 3 T11: 0.3468 T22: 0.3137 REMARK 3 T33: 0.3891 T12: -0.0028 REMARK 3 T13: -0.0636 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.1062 L22: 0.3229 REMARK 3 L33: 1.8509 L12: 0.2915 REMARK 3 L13: -1.1277 L23: -0.5291 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0375 S13: 0.0443 REMARK 3 S21: 0.0021 S22: -0.0061 S23: 0.0346 REMARK 3 S31: -0.0386 S32: 0.0573 S33: -0.0358 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51096 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 8.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.480 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6I41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM CHLORIDE, 100 MM HEPES REMARK 280 PH 7.0, 20% (W/V) PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.29550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.17550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.64775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.17550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.94325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.17550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.17550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.64775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.17550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.17550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.94325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.29550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 THR B 252 REMARK 465 THR B 253 REMARK 465 GLY C 22 REMARK 465 ALA C 23 REMARK 465 MET C 24 REMARK 465 ALA C 25 REMARK 465 SER C 26 REMARK 465 GLY C 27 REMARK 465 THR D 252 REMARK 465 THR D 253 REMARK 465 GLY E 22 REMARK 465 ALA E 23 REMARK 465 MET E 24 REMARK 465 ALA E 25 REMARK 465 SER E 26 REMARK 465 GLY E 27 REMARK 465 THR F 252 REMARK 465 THR F 253 REMARK 465 GLY G 22 REMARK 465 ALA G 23 REMARK 465 MET G 24 REMARK 465 ALA G 25 REMARK 465 SER G 26 REMARK 465 GLY G 27 REMARK 465 GLU G 46 REMARK 465 THR H 252 REMARK 465 THR H 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 LYS A 53 CE NZ REMARK 470 ASN A 62 N REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 66 CE NZ REMARK 470 LYS A 74 CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 ARG A 121 CZ NH1 NH2 REMARK 470 LYS A 134 NZ REMARK 470 LYS A 135 CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 LYS C 28 CG CD CE NZ REMARK 470 LYS C 31 CE NZ REMARK 470 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 LYS C 53 CD CE NZ REMARK 470 ASN C 62 CG OD1 ND2 REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 LYS C 66 CE NZ REMARK 470 LYS C 74 CD CE NZ REMARK 470 GLU C 79 CG CD OE1 OE2 REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 SER C 96 OG REMARK 470 LYS C 103 CE NZ REMARK 470 LYS C 110 CE NZ REMARK 470 LYS C 115 NZ REMARK 470 LYS C 134 NZ REMARK 470 LYS C 135 CD CE NZ REMARK 470 ASP C 166 CG OD1 OD2 REMARK 470 LYS D 245 CG CD CE NZ REMARK 470 LYS E 28 N CA CB CG CD CE NZ REMARK 470 LYS E 31 CD CE NZ REMARK 470 ARG E 45 CD NE CZ NH1 NH2 REMARK 470 GLU E 47 CG CD OE1 OE2 REMARK 470 LYS E 53 CG CD CE NZ REMARK 470 LYS E 64 CD CE NZ REMARK 470 LYS E 81 CG CD CE NZ REMARK 470 LYS E 95 CG CD CE NZ REMARK 470 GLU E 97 CG CD OE1 OE2 REMARK 470 ARG E 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 101 CE NZ REMARK 470 LYS E 103 NZ REMARK 470 LYS E 110 CG CD CE NZ REMARK 470 LYS E 115 CE NZ REMARK 470 GLN E 120 CG CD OE1 NE2 REMARK 470 ARG E 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 135 CG CD CE NZ REMARK 470 ARG E 138 CZ NH1 NH2 REMARK 470 GLU E 145 CG CD OE1 OE2 REMARK 470 VAL E 164 CG1 CG2 REMARK 470 GLN E 165 CG CD OE1 NE2 REMARK 470 ASP E 166 CG OD1 OD2 REMARK 470 LYS F 245 CG CD CE NZ REMARK 470 LYS G 28 N CA CB CG CD CE NZ REMARK 470 LYS G 31 CG CD CE NZ REMARK 470 ARG G 45 NE CZ NH1 NH2 REMARK 470 GLU G 47 CG CD OE1 OE2 REMARK 470 GLU G 50 CG CD OE1 OE2 REMARK 470 LYS G 53 CG CD CE NZ REMARK 470 ASN G 62 CG OD1 ND2 REMARK 470 ASP G 63 CG OD1 OD2 REMARK 470 LYS G 64 NZ REMARK 470 ARG G 70 CZ NH1 NH2 REMARK 470 LYS G 74 CG CD CE NZ REMARK 470 GLU G 78 CG CD OE1 OE2 REMARK 470 GLU G 79 CG CD OE1 OE2 REMARK 470 LYS G 81 CG CD CE NZ REMARK 470 LYS G 95 CG CD CE NZ REMARK 470 LYS G 101 CD CE NZ REMARK 470 LYS G 110 CD CE NZ REMARK 470 ARG G 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 134 CD CE NZ REMARK 470 LYS G 135 CG CD CE NZ REMARK 470 GLU G 145 CG CD OE1 OE2 REMARK 470 GLN G 165 CG CD OE1 NE2 REMARK 470 LYS H 245 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 2.86 -67.98 REMARK 500 SER A 58 -156.18 -161.71 REMARK 500 ASP A 77 -165.08 -123.78 REMARK 500 SER A 80 31.09 -99.04 REMARK 500 GLN A 120 -51.87 65.48 REMARK 500 LYS A 135 76.53 -113.61 REMARK 500 ARG C 45 57.87 -94.52 REMARK 500 LYS C 135 65.05 -114.12 REMARK 500 ALA E 61 -144.27 60.71 REMARK 500 ALA G 61 -139.05 58.55 REMARK 500 LYS G 135 66.17 -115.26 REMARK 500 ASP G 144 99.13 -63.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 257 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH C 254 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH C 255 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH D 303 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH H 304 DISTANCE = 6.55 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I41 RELATED DB: PDB REMARK 900 6I41 CONTAINS WILD-TYPE SPOP REMARK 900 RELATED ID: 6I5P RELATED DB: PDB REMARK 900 6I5P CONTAINS SPOP E47K REMARK 900 RELATED ID: 6I68 RELATED DB: PDB DBREF 6I7A A 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I7A B 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I7A C 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I7A D 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I7A E 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I7A F 245 253 UNP Q15059 BRD3_HUMAN 245 253 DBREF 6I7A G 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 6I7A H 245 253 UNP Q15059 BRD3_HUMAN 245 253 SEQADV 6I7A GLY A 22 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA A 23 UNP O43791 EXPRESSION TAG SEQADV 6I7A MET A 24 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA A 25 UNP O43791 EXPRESSION TAG SEQADV 6I7A SER A 26 UNP O43791 EXPRESSION TAG SEQADV 6I7A GLY A 27 UNP O43791 EXPRESSION TAG SEQADV 6I7A ASN A 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQADV 6I7A GLY C 22 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA C 23 UNP O43791 EXPRESSION TAG SEQADV 6I7A MET C 24 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA C 25 UNP O43791 EXPRESSION TAG SEQADV 6I7A SER C 26 UNP O43791 EXPRESSION TAG SEQADV 6I7A GLY C 27 UNP O43791 EXPRESSION TAG SEQADV 6I7A ASN C 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQADV 6I7A GLY E 22 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA E 23 UNP O43791 EXPRESSION TAG SEQADV 6I7A MET E 24 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA E 25 UNP O43791 EXPRESSION TAG SEQADV 6I7A SER E 26 UNP O43791 EXPRESSION TAG SEQADV 6I7A GLY E 27 UNP O43791 EXPRESSION TAG SEQADV 6I7A ASN E 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQADV 6I7A GLY G 22 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA G 23 UNP O43791 EXPRESSION TAG SEQADV 6I7A MET G 24 UNP O43791 EXPRESSION TAG SEQADV 6I7A ALA G 25 UNP O43791 EXPRESSION TAG SEQADV 6I7A SER G 26 UNP O43791 EXPRESSION TAG SEQADV 6I7A GLY G 27 UNP O43791 EXPRESSION TAG SEQADV 6I7A ASN G 140 UNP O43791 ASP 140 ENGINEERED MUTATION SEQRES 1 A 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 A 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 A 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 A 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 A 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 A 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 A 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 A 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 A 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 A 145 ARG ASN PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 A 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 A 145 GLN ASP SEQRES 1 B 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 C 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 C 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 C 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 C 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 C 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 C 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 C 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 C 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 C 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 C 145 ARG ASN PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 C 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 C 145 GLN ASP SEQRES 1 D 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 E 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 E 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 E 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 E 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 E 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 E 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 E 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 E 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 E 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 E 145 ARG ASN PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 E 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 E 145 GLN ASP SEQRES 1 F 9 LYS ALA ASP THR THR THR PRO THR THR SEQRES 1 G 145 GLY ALA MET ALA SER GLY LYS VAL VAL LYS PHE SER TYR SEQRES 2 G 145 MET TRP THR ILE ASN ASN PHE SER PHE CYS ARG GLU GLU SEQRES 3 G 145 MET GLY GLU VAL ILE LYS SER SER THR PHE SER SER GLY SEQRES 4 G 145 ALA ASN ASP LYS LEU LYS TRP CYS LEU ARG VAL ASN PRO SEQRES 5 G 145 LYS GLY LEU ASP GLU GLU SER LYS ASP TYR LEU SER LEU SEQRES 6 G 145 TYR LEU LEU LEU VAL SER CYS PRO LYS SER GLU VAL ARG SEQRES 7 G 145 ALA LYS PHE LYS PHE SER ILE LEU ASN ALA LYS GLY GLU SEQRES 8 G 145 GLU THR LYS ALA MET GLU SER GLN ARG ALA TYR ARG PHE SEQRES 9 G 145 VAL GLN GLY LYS ASP TRP GLY PHE LYS LYS PHE ILE ARG SEQRES 10 G 145 ARG ASN PHE LEU LEU ASP GLU ALA ASN GLY LEU LEU PRO SEQRES 11 G 145 ASP ASP LYS LEU THR LEU PHE CYS GLU VAL SER VAL VAL SEQRES 12 G 145 GLN ASP SEQRES 1 H 9 LYS ALA ASP THR THR THR PRO THR THR FORMUL 9 HOH *261(H2 O) HELIX 1 AA1 ASN A 40 CYS A 44 5 5 HELIX 2 AA2 ARG A 139 ASP A 144 1 6 HELIX 3 AA3 GLU A 145 GLY A 148 5 4 HELIX 4 AA4 LEU A 150 LYS A 154 5 5 HELIX 5 AA5 ASN C 40 CYS C 44 5 5 HELIX 6 AA6 ASP C 77 LYS C 81 5 5 HELIX 7 AA7 ARG C 139 LEU C 143 1 5 HELIX 8 AA8 ASP C 144 GLY C 148 5 5 HELIX 9 AA9 LEU C 150 LYS C 154 5 5 HELIX 10 AB1 ASN E 40 CYS E 44 5 5 HELIX 11 AB2 ARG E 139 ASP E 144 1 6 HELIX 12 AB3 GLU E 145 GLY E 148 5 4 HELIX 13 AB4 LEU E 150 LYS E 154 5 5 HELIX 14 AB5 ASN G 40 CYS G 44 5 5 HELIX 15 AB6 ARG G 139 ASP G 144 1 6 HELIX 16 AB7 GLU G 145 GLY G 148 5 4 HELIX 17 AB8 LEU G 150 LYS G 154 5 5 SHEET 1 AA1 8 GLU A 113 GLU A 118 0 SHEET 2 AA1 8 VAL A 98 LEU A 107 -1 N ILE A 106 O THR A 114 SHEET 3 AA1 8 LEU A 155 GLN A 165 -1 O PHE A 158 N SER A 105 SHEET 4 AA1 8 VAL A 30 ILE A 38 -1 N ILE A 38 O LEU A 155 SHEET 5 AA1 8 VAL E 30 ILE E 38 1 O SER E 33 N MET A 35 SHEET 6 AA1 8 LEU E 155 GLN E 165 -1 O LEU E 157 N TRP E 36 SHEET 7 AA1 8 VAL E 98 LEU E 107 -1 N LYS E 101 O SER E 162 SHEET 8 AA1 8 GLU E 113 GLU E 118 -1 O MET E 117 N PHE E 104 SHEET 1 AA2 8 TYR A 123 PHE A 125 0 SHEET 2 AA2 8 VAL A 98 LEU A 107 -1 N VAL A 98 O PHE A 125 SHEET 3 AA2 8 LEU A 155 GLN A 165 -1 O PHE A 158 N SER A 105 SHEET 4 AA2 8 VAL A 30 ILE A 38 -1 N ILE A 38 O LEU A 155 SHEET 5 AA2 8 VAL E 30 ILE E 38 1 O SER E 33 N MET A 35 SHEET 6 AA2 8 LEU E 155 GLN E 165 -1 O LEU E 157 N TRP E 36 SHEET 7 AA2 8 VAL E 98 LEU E 107 -1 N LYS E 101 O SER E 162 SHEET 8 AA2 8 TYR E 123 PHE E 125 -1 O PHE E 125 N VAL E 98 SHEET 1 AA3 4 ILE A 52 LYS A 53 0 SHEET 2 AA3 4 TRP A 67 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 4 TYR A 83 LEU A 90 -1 O LEU A 89 N CYS A 68 SHEET 4 AA3 4 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 SHEET 1 AA4 8 GLU C 113 GLU C 118 0 SHEET 2 AA4 8 ARG C 99 LEU C 107 -1 N PHE C 104 O MET C 117 SHEET 3 AA4 8 LEU C 155 VAL C 164 -1 O PHE C 158 N SER C 105 SHEET 4 AA4 8 VAL C 29 ILE C 38 -1 N ILE C 38 O LEU C 155 SHEET 5 AA4 8 VAL G 30 ILE G 38 1 O SER G 33 N MET C 35 SHEET 6 AA4 8 LEU G 155 VAL G 163 -1 O LEU G 157 N TRP G 36 SHEET 7 AA4 8 VAL G 98 LEU G 107 -1 N SER G 105 O PHE G 158 SHEET 8 AA4 8 GLU G 113 GLU G 118 -1 O MET G 117 N PHE G 104 SHEET 1 AA5 8 TYR C 123 ARG C 124 0 SHEET 2 AA5 8 ARG C 99 LEU C 107 -1 N ALA C 100 O TYR C 123 SHEET 3 AA5 8 LEU C 155 VAL C 164 -1 O PHE C 158 N SER C 105 SHEET 4 AA5 8 VAL C 29 ILE C 38 -1 N ILE C 38 O LEU C 155 SHEET 5 AA5 8 VAL G 30 ILE G 38 1 O SER G 33 N MET C 35 SHEET 6 AA5 8 LEU G 155 VAL G 163 -1 O LEU G 157 N TRP G 36 SHEET 7 AA5 8 VAL G 98 LEU G 107 -1 N SER G 105 O PHE G 158 SHEET 8 AA5 8 TYR G 123 PHE G 125 -1 O PHE G 125 N VAL G 98 SHEET 1 AA6 4 ILE C 52 LYS C 53 0 SHEET 2 AA6 4 TRP C 67 ASN C 72 -1 O VAL C 71 N ILE C 52 SHEET 3 AA6 4 TYR C 83 LEU C 90 -1 O TYR C 87 N ARG C 70 SHEET 4 AA6 4 ASP C 130 ARG C 138 -1 O ILE C 137 N LEU C 84 SHEET 1 AA7 3 ILE E 52 LYS E 53 0 SHEET 2 AA7 3 LYS E 66 ASN E 72 -1 O VAL E 71 N ILE E 52 SHEET 3 AA7 3 PHE E 57 SER E 58 -1 N PHE E 57 O TRP E 67 SHEET 1 AA8 4 ILE E 52 LYS E 53 0 SHEET 2 AA8 4 LYS E 66 ASN E 72 -1 O VAL E 71 N ILE E 52 SHEET 3 AA8 4 TYR E 83 LEU E 90 -1 O SER E 85 N ASN E 72 SHEET 4 AA8 4 ASP E 130 ARG E 138 -1 O TRP E 131 N LEU E 88 SHEET 1 AA9 3 ILE G 52 LYS G 53 0 SHEET 2 AA9 3 LYS G 66 ASN G 72 -1 O VAL G 71 N ILE G 52 SHEET 3 AA9 3 PHE G 57 SER G 58 -1 N PHE G 57 O TRP G 67 SHEET 1 AB1 4 ILE G 52 LYS G 53 0 SHEET 2 AB1 4 LYS G 66 ASN G 72 -1 O VAL G 71 N ILE G 52 SHEET 3 AB1 4 TYR G 83 LEU G 90 -1 O TYR G 87 N ARG G 70 SHEET 4 AB1 4 ASP G 130 ARG G 138 -1 O TRP G 131 N LEU G 88 SSBOND 1 CYS A 93 CYS G 93 1555 7555 2.04 SSBOND 2 CYS C 93 CYS E 93 1555 7565 2.04 CRYST1 90.351 90.351 166.591 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006003 0.00000