HEADER VIRAL PROTEIN 06-OCT-18 6IIJ TITLE CRYO-EM STRUCTURE OF CV-A10 MATURE VIRION COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 3 ORGANISM_TAXID: 42769; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 6 ORGANISM_TAXID: 42769; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 9 ORGANISM_TAXID: 42769; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A10; SOURCE 12 ORGANISM_TAXID: 42769 KEYWDS COXSACKIEVIRUS A10, MATURE VIRION, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.H.CHEN,X.H.YE,Y.CONG,Z.HUANG REVDAT 3 27-MAR-24 6IIJ 1 REMARK REVDAT 2 22-MAY-19 6IIJ 1 JRNL REVDAT 1 07-NOV-18 6IIJ 0 JRNL AUTH J.CHEN,X.YE,X.Y.ZHANG,Z.ZHU,X.ZHANG,Z.XU,Z.DING,G.ZOU,Q.LIU, JRNL AUTH 2 L.KONG,W.JIANG,W.ZHU,Y.CONG,Z.HUANG JRNL TITL COXSACKIEVIRUS A10 ATOMIC STRUCTURE FACILITATING THE JRNL TITL 2 DISCOVERY OF A BROAD-SPECTRUM INHIBITOR AGAINST HUMAN JRNL TITL 3 ENTEROVIRUSES. JRNL REF CELL DISCOV V. 5 4 2019 JRNL REFN ESSN 2056-5968 JRNL PMID 30652025 JRNL DOI 10.1038/S41421-018-0073-7 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.840 REMARK 3 NUMBER OF PARTICLES : 13273 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6IIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009200. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COXSACKIEVIRUS A10 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 800.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 -0.000027 356.47492 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000047 -56.47394 REMARK 350 BIOMT3 2 -0.000037 -0.000041 1.000000 0.01677 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000081 520.34163 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000036 265.10245 REMARK 350 BIOMT3 3 -0.000087 -0.000018 1.000000 0.02274 REMARK 350 BIOMT1 4 -0.809017 0.587785 -0.000087 265.14191 REMARK 350 BIOMT2 4 -0.587785 -0.809017 -0.000018 520.32153 REMARK 350 BIOMT3 4 -0.000081 0.000036 1.000000 0.00966 REMARK 350 BIOMT1 5 0.309017 0.951057 -0.000037 -56.44690 REMARK 350 BIOMT2 5 -0.951057 0.309017 -0.000041 356.47920 REMARK 350 BIOMT3 5 -0.000027 0.000047 1.000000 -0.00439 REMARK 350 BIOMT1 6 -0.638169 0.262899 -0.723619 455.64589 REMARK 350 BIOMT2 6 0.262899 -0.808983 -0.525767 449.76725 REMARK 350 BIOMT3 6 -0.723619 -0.525767 0.447152 391.24208 REMARK 350 BIOMT1 7 0.052853 0.688205 -0.723589 213.29549 REMARK 350 BIOMT2 7 -0.688129 -0.500000 -0.525813 589.16181 REMARK 350 BIOMT3 7 -0.723661 0.525713 0.447147 162.98978 REMARK 350 BIOMT1 8 0.670881 0.162430 -0.723558 193.25862 REMARK 350 BIOMT2 8 -0.688152 0.499962 -0.525818 372.08934 REMARK 350 BIOMT3 8 0.276343 0.850679 0.447191 -124.65887 REMARK 350 BIOMT1 9 0.361820 -0.587822 -0.723568 423.22555 REMARK 350 BIOMT2 9 0.262861 0.808990 -0.525775 98.53662 REMARK 350 BIOMT3 9 0.894422 0.000038 0.447224 -74.18320 REMARK 350 BIOMT1 10 -0.447217 -0.525729 -0.723606 585.38980 REMARK 350 BIOMT2 10 0.850643 0.000018 -0.525744 146.54421 REMARK 350 BIOMT3 10 0.276412 -0.850652 0.447200 244.66112 REMARK 350 BIOMT1 11 -0.052957 0.688204 0.723582 -77.88727 REMARK 350 BIOMT2 11 0.688204 -0.499891 0.525818 62.05797 REMARK 350 BIOMT3 11 0.723582 0.525818 -0.447152 42.91714 REMARK 350 BIOMT1 12 0.638130 0.263002 0.723616 -135.61850 REMARK 350 BIOMT2 12 -0.262777 -0.809017 0.525775 335.62504 REMARK 350 BIOMT3 12 0.723698 -0.525663 -0.447147 271.15351 REMARK 350 BIOMT1 13 0.447296 -0.525655 0.723611 77.01807 REMARK 350 BIOMT2 13 -0.850643 -0.000105 0.525744 287.64866 REMARK 350 BIOMT3 13 -0.276284 -0.850698 -0.447191 558.81238 REMARK 350 BIOMT1 14 -0.361732 -0.587870 0.723574 266.16594 REMARK 350 BIOMT2 14 -0.262982 0.808956 0.525767 -15.56943 REMARK 350 BIOMT3 14 -0.894422 -0.000101 -0.447224 508.35897 REMARK 350 BIOMT1 15 -0.670905 0.162336 0.723556 170.42917 REMARK 350 BIOMT2 15 0.688077 0.500071 0.525813 -154.99215 REMARK 350 BIOMT3 15 -0.276471 0.850633 -0.447200 189.51818 REMARK 350 BIOMT1 16 -0.308874 -0.951103 0.000037 490.61048 REMARK 350 BIOMT2 16 -0.951103 0.308874 -0.000051 356.52251 REMARK 350 BIOMT3 16 0.000037 -0.000051 -1.000000 434.16522 REMARK 350 BIOMT1 17 -1.000000 -0.000150 0.000000 434.21719 REMARK 350 BIOMT2 17 -0.000150 1.000000 -0.000010 0.03482 REMARK 350 BIOMT3 17 0.000000 -0.000010 -1.000000 434.16439 REMARK 350 BIOMT1 18 -0.309160 0.951010 0.000027 77.75077 REMARK 350 BIOMT2 18 0.951010 0.309160 0.000037 -56.49273 REMARK 350 BIOMT3 18 0.000027 0.000037 -1.000000 434.14819 REMARK 350 BIOMT1 19 0.808929 0.587907 0.000081 -86.16430 REMARK 350 BIOMT2 19 0.587907 -0.808929 0.000026 265.05901 REMARK 350 BIOMT3 19 0.000081 0.000026 -1.000000 434.13900 REMARK 350 BIOMT1 20 0.809105 -0.587664 0.000087 168.99703 REMARK 350 BIOMT2 20 -0.587664 -0.809105 -0.000028 520.31647 REMARK 350 BIOMT3 20 0.000087 -0.000028 -1.000000 434.14953 REMARK 350 BIOMT1 21 -0.138211 -0.951042 0.276435 393.54693 REMARK 350 BIOMT2 21 0.425382 -0.309061 -0.850607 376.48345 REMARK 350 BIOMT3 21 0.894398 0.000027 0.447272 -74.18596 REMARK 350 BIOMT1 22 -0.947215 -0.162453 0.276393 397.99184 REMARK 350 BIOMT2 22 -0.162453 -0.500033 -0.850633 545.56110 REMARK 350 BIOMT3 22 0.276394 -0.850633 0.447248 244.65047 REMARK 350 BIOMT1 23 -0.447217 0.850643 0.276412 69.51253 REMARK 350 BIOMT2 23 -0.525729 0.000018 -0.850652 515.87533 REMARK 350 BIOMT3 23 -0.723606 -0.525744 0.447200 391.22390 REMARK 350 BIOMT1 24 0.670802 0.688181 0.276464 -137.94376 REMARK 350 BIOMT2 24 -0.162411 0.500038 -0.850638 328.45087 REMARK 350 BIOMT3 24 -0.723635 0.525708 0.447195 162.97484 REMARK 350 BIOMT1 25 0.861778 -0.425322 0.276478 62.32052 REMARK 350 BIOMT2 25 0.425408 0.309017 -0.850610 242.30195 REMARK 350 BIOMT3 25 0.276346 0.850653 0.447239 -124.66427 REMARK 350 BIOMT1 26 -0.361859 0.587701 0.723647 10.97683 REMARK 350 BIOMT2 26 0.262797 0.809078 -0.525671 98.50853 REMARK 350 BIOMT3 26 -0.894425 -0.000046 -0.447219 508.34660 REMARK 350 BIOMT1 27 0.447089 0.525729 0.723685 -151.19464 REMARK 350 BIOMT2 27 0.850707 0.000105 -0.525640 146.48854 REMARK 350 BIOMT3 27 -0.276420 0.850652 -0.447195 189.50180 REMARK 350 BIOMT1 28 0.638130 -0.262777 0.723698 -21.49633 REMARK 350 BIOMT2 28 0.263002 -0.809017 -0.525663 449.72963 REMARK 350 BIOMT3 28 0.723616 0.525775 -0.447147 42.91781 REMARK 350 BIOMT1 29 -0.052750 -0.688129 0.723668 220.83310 REMARK 350 BIOMT2 29 -0.688129 -0.500109 -0.525708 589.16292 REMARK 350 BIOMT3 29 0.723668 -0.525708 -0.447141 271.16872 REMARK 350 BIOMT1 30 -0.670777 -0.162505 0.723637 240.90262 REMARK 350 BIOMT2 30 -0.688256 0.499929 -0.525713 372.09634 REMARK 350 BIOMT3 30 -0.276336 -0.850684 -0.447186 558.81954 REMARK 350 BIOMT1 31 -0.447168 0.525655 -0.723690 357.15586 REMARK 350 BIOMT2 31 -0.850707 -0.000018 0.525640 287.66632 REMARK 350 BIOMT3 31 0.276292 0.850698 0.447186 -124.65087 REMARK 350 BIOMT1 32 0.361771 0.587748 -0.723653 168.05360 REMARK 350 BIOMT2 32 -0.262919 0.809044 0.525663 -15.57972 REMARK 350 BIOMT3 32 0.894425 0.000093 0.447219 -74.19443 REMARK 350 BIOMT1 33 0.670802 -0.162411 -0.723635 263.81134 REMARK 350 BIOMT2 33 0.688181 0.500038 0.525708 -154.98485 REMARK 350 BIOMT3 33 0.276464 -0.850638 0.447195 244.64776 REMARK 350 BIOMT1 34 0.052853 -0.688129 -0.723661 512.09513 REMARK 350 BIOMT2 34 0.688205 -0.500000 0.525713 62.10408 REMARK 350 BIOMT3 34 -0.723589 -0.525813 0.447147 391.24663 REMARK 350 BIOMT1 35 -0.638090 -0.262881 -0.723695 569.78522 REMARK 350 BIOMT2 35 -0.262881 -0.809051 0.525671 335.67755 REMARK 350 BIOMT3 35 -0.723695 0.525671 0.447141 163.00753 REMARK 350 BIOMT1 36 0.947239 -0.162313 -0.276392 106.68947 REMARK 350 BIOMT2 36 0.162528 -0.500000 0.850638 105.68943 REMARK 350 BIOMT3 36 -0.276266 -0.850679 -0.447239 558.81466 REMARK 350 BIOMT1 37 0.138354 -0.951024 -0.276425 453.51829 REMARK 350 BIOMT2 37 -0.425336 -0.309116 0.850610 191.87781 REMARK 350 BIOMT3 37 -0.894398 -0.000112 -0.447272 508.36660 REMARK 350 BIOMT1 38 -0.861714 -0.425454 -0.276474 556.54156 REMARK 350 BIOMT2 38 -0.425454 0.308962 0.850607 57.72762 REMARK 350 BIOMT3 38 -0.276474 0.850607 -0.447248 189.53497 REMARK 350 BIOMT1 39 -0.670905 0.688077 -0.276471 273.38462 REMARK 350 BIOMT2 39 0.162336 0.500071 0.850633 -111.37013 REMARK 350 BIOMT3 39 0.723556 0.525813 -0.447200 42.93425 REMARK 350 BIOMT1 40 0.447089 0.850707 -0.276420 -4.63926 REMARK 350 BIOMT2 40 0.525729 0.000105 0.850652 -81.72810 REMARK 350 BIOMT3 40 0.723685 -0.525640 -0.447195 271.16165 REMARK 350 BIOMT1 41 -0.138211 0.425382 0.894398 -39.40493 REMARK 350 BIOMT2 41 -0.951042 -0.309061 0.000027 490.63805 REMARK 350 BIOMT3 41 0.276435 -0.850607 0.447272 244.63052 REMARK 350 BIOMT1 42 0.361820 0.262861 0.894422 -112.68177 REMARK 350 BIOMT2 42 -0.587823 0.808990 0.000038 169.06920 REMARK 350 BIOMT3 42 -0.723568 -0.525775 0.447224 391.21721 REMARK 350 BIOMT1 43 0.361771 -0.262919 0.894425 1.46818 REMARK 350 BIOMT2 43 0.587748 0.809044 0.000093 -86.16162 REMARK 350 BIOMT3 43 -0.723653 0.525663 0.447219 162.98335 REMARK 350 BIOMT1 44 -0.138290 -0.425347 0.894402 145.29356 REMARK 350 BIOMT2 44 0.951071 -0.308973 0.000115 77.66590 REMARK 350 BIOMT3 44 0.276297 0.850656 0.447263 -124.65961 REMARK 350 BIOMT1 45 -0.447296 0.000046 0.894386 120.03259 REMARK 350 BIOMT2 45 0.000046 -1.000000 0.000074 434.14770 REMARK 350 BIOMT3 45 0.894386 0.000074 0.447296 -74.19889 REMARK 350 BIOMT1 46 -0.447168 -0.850707 0.276292 438.86875 REMARK 350 BIOMT2 46 0.525655 -0.000018 0.850698 -81.69529 REMARK 350 BIOMT3 46 -0.723690 0.525640 0.447186 163.00356 REMARK 350 BIOMT1 47 -0.947264 0.162388 0.276264 327.51183 REMARK 350 BIOMT2 47 0.162388 -0.499967 0.850684 105.70263 REMARK 350 BIOMT3 47 0.276264 0.850684 0.447231 -124.65133 REMARK 350 BIOMT1 48 -0.138290 0.951071 0.276297 -19.32995 REMARK 350 BIOMT2 48 -0.425347 -0.308973 0.850656 191.83934 REMARK 350 BIOMT3 48 0.894402 0.000115 0.447263 -74.20413 REMARK 350 BIOMT1 49 0.861778 0.425408 0.276346 -122.33304 REMARK 350 BIOMT2 49 -0.425322 0.309017 0.850653 57.67684 REMARK 350 BIOMT3 49 0.276478 -0.850610 0.447239 244.62884 REMARK 350 BIOMT1 50 0.670881 -0.688152 0.276343 160.84933 REMARK 350 BIOMT2 50 0.162430 0.499962 0.850679 -111.37686 REMARK 350 BIOMT3 50 -0.723558 -0.525818 0.447191 391.23125 REMARK 350 BIOMT1 51 0.947239 0.162528 -0.276266 36.14331 REMARK 350 BIOMT2 51 -0.162313 -0.500000 -0.850679 545.53362 REMARK 350 BIOMT3 51 -0.276392 0.850638 -0.447239 189.50847 REMARK 350 BIOMT1 52 0.447296 -0.850643 -0.276284 364.62709 REMARK 350 BIOMT2 52 -0.525655 -0.000105 -0.850698 515.89579 REMARK 350 BIOMT3 52 0.723611 0.525744 -0.447191 42.93534 REMARK 350 BIOMT1 53 -0.670777 -0.688256 -0.276336 572.11156 REMARK 350 BIOMT2 53 -0.162505 0.499929 -0.850684 328.50480 REMARK 350 BIOMT3 53 0.723637 -0.525713 -0.447186 271.18627 REMARK 350 BIOMT1 54 -0.861842 0.425275 -0.276351 371.86024 REMARK 350 BIOMT2 54 0.425275 0.309072 -0.850656 242.32864 REMARK 350 BIOMT3 54 -0.276351 -0.850656 -0.447231 558.82624 REMARK 350 BIOMT1 55 0.138147 0.951089 -0.276307 40.61365 REMARK 350 BIOMT2 55 0.425394 -0.308918 -0.850653 376.45982 REMARK 350 BIOMT3 55 -0.894402 -0.000024 -0.447263 508.34659 REMARK 350 BIOMT1 56 -0.361859 0.262797 -0.894425 432.76197 REMARK 350 BIOMT2 56 0.587701 0.809078 -0.000046 -86.12865 REMARK 350 BIOMT3 56 0.723647 -0.525671 -0.447219 271.18189 REMARK 350 BIOMT1 57 0.138147 0.425394 -0.894402 288.91195 REMARK 350 BIOMT2 57 0.951089 -0.308918 -0.000024 77.68012 REMARK 350 BIOMT3 57 -0.276307 -0.850653 -0.447263 558.82323 REMARK 350 BIOMT1 58 0.447296 0.000104 -0.894386 314.11931 REMARK 350 BIOMT2 58 0.000104 -1.000000 -0.000064 434.16521 REMARK 350 BIOMT3 58 -0.894386 -0.000064 -0.447296 508.35895 REMARK 350 BIOMT1 59 0.138354 -0.425336 -0.894398 473.54834 REMARK 350 BIOMT2 59 -0.951024 -0.309116 -0.000112 490.67635 REMARK 350 BIOMT3 59 -0.276425 0.850610 -0.447272 189.52897 REMARK 350 BIOMT1 60 -0.361732 -0.262982 -0.894422 546.87353 REMARK 350 BIOMT2 60 -0.587870 0.808956 -0.000101 169.11706 REMARK 350 BIOMT3 60 0.723574 0.525767 -0.447224 42.94549 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 ASN A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 MET A 297 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 VAL D 5 REMARK 465 SER D 6 REMARK 465 THR D 7 REMARK 465 GLN D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 GLY D 11 REMARK 465 SER D 12 REMARK 465 HIS D 13 REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 ASN D 17 REMARK 465 VAL D 18 REMARK 465 ALA D 19 REMARK 465 THR D 20 REMARK 465 GLY D 21 REMARK 465 GLY D 22 REMARK 465 SER D 23 REMARK 465 THR D 24 REMARK 465 ILE D 25 REMARK 465 ASN D 26 REMARK 465 PHE D 27 REMARK 465 ASN D 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 -140.63 55.92 REMARK 500 ILE A 20 -62.62 -130.27 REMARK 500 GLU A 40 -175.93 -170.14 REMARK 500 ASP A 100 -123.45 48.29 REMARK 500 THR A 101 -75.29 -94.84 REMARK 500 THR A 102 -119.31 47.43 REMARK 500 THR A 173 -60.00 -127.33 REMARK 500 THR A 215 -63.07 -92.96 REMARK 500 THR A 218 -16.45 -49.19 REMARK 500 VAL A 260 76.92 41.91 REMARK 500 PRO A 275 47.90 -86.97 REMARK 500 ASN A 284 72.58 57.30 REMARK 500 SER A 285 109.68 -59.14 REMARK 500 ALA A 286 179.02 166.02 REMARK 500 SER A 291 -141.88 50.53 REMARK 500 LYS A 293 19.88 55.96 REMARK 500 ASN B 30 -150.33 47.34 REMARK 500 THR B 48 -61.22 -129.90 REMARK 500 ASP B 57 -119.40 61.18 REMARK 500 ARG B 62 166.57 174.77 REMARK 500 PRO B 83 47.34 -73.91 REMARK 500 ASP B 84 -61.98 -134.90 REMARK 500 SER B 104 159.72 179.03 REMARK 500 PRO B 147 49.45 -84.84 REMARK 500 ASP B 168 -5.95 63.40 REMARK 500 THR B 188 -65.88 -103.70 REMARK 500 ASN B 200 166.94 177.05 REMARK 500 VAL B 220 -71.83 -57.18 REMARK 500 ASN C 57 -76.05 -124.09 REMARK 500 THR C 58 -148.99 51.53 REMARK 500 ALA C 61 -10.60 84.38 REMARK 500 THR C 62 -140.66 51.27 REMARK 500 PRO C 136 -176.90 -63.87 REMARK 500 GLN C 160 72.45 62.99 REMARK 500 THR C 198 -79.01 -115.79 REMARK 500 ILE C 226 73.23 58.94 REMARK 500 THR D 42 -134.83 64.04 REMARK 500 PRO D 56 47.60 -87.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 114 VAL A 115 -135.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9674 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF CV-A10 MATURE VIRION DBREF1 6IIJ A 1 297 UNP A0A1B3Z4Y8_9ENTO DBREF2 6IIJ A A0A1B3Z4Y8 565 861 DBREF1 6IIJ B 1 255 UNP A0A1B3Z4Y8_9ENTO DBREF2 6IIJ B A0A1B3Z4Y8 70 324 DBREF1 6IIJ C 1 240 UNP A0A1B3Z4Y8_9ENTO DBREF2 6IIJ C A0A1B3Z4Y8 325 564 DBREF1 6IIJ D 1 69 UNP A0A1B3Z4Y8_9ENTO DBREF2 6IIJ D A0A1B3Z4Y8 1 69 SEQRES 1 A 297 GLY ASP PRO VAL GLU ASP ILE ILE HIS ASP ALA LEU GLY SEQRES 2 A 297 ASN THR ALA ARG ARG ALA ILE SER GLY ALA THR ASN VAL SEQRES 3 A 297 GLU SER ALA ALA ASP THR THR PRO SER SER HIS ARG LEU SEQRES 4 A 297 GLU THR GLY ARG VAL PRO ALA LEU GLN ALA ALA GLU THR SEQRES 5 A 297 GLY ALA THR SER ASN ALA THR ASP GLU ASN MET ILE GLU SEQRES 6 A 297 THR ARG CYS VAL ILE ASN ARG ASN GLY VAL LEU GLU THR SEQRES 7 A 297 THR ILE ASN HIS PHE PHE SER ARG SER GLY LEU VAL GLY SEQRES 8 A 297 VAL VAL ASN LEU THR ASP GLY GLY ASP THR THR GLY TYR SEQRES 9 A 297 ALA THR TRP ASP ILE ASP ILE MET GLY PHE VAL GLN LEU SEQRES 10 A 297 ARG ARG LYS CYS GLU MET PHE THR TYR MET ARG PHE ASN SEQRES 11 A 297 ALA GLU PHE THR PHE VAL THR THR THR LYS SER GLY GLU SEQRES 12 A 297 ALA ARG PRO TYR MET LEU GLN TYR MET TYR VAL PRO PRO SEQRES 13 A 297 GLY ALA PRO LYS PRO THR GLY ARG ASP ALA PHE GLN TRP SEQRES 14 A 297 GLN THR ALA THR ASN PRO SER VAL PHE VAL LYS LEU THR SEQRES 15 A 297 ASP PRO PRO ALA GLN VAL SER VAL PRO PHE MET SER PRO SEQRES 16 A 297 ALA SER ALA TYR GLN TRP PHE TYR ASP GLY TYR PRO THR SEQRES 17 A 297 PHE GLY GLN HIS PRO GLU THR SER ASN THR THR TYR GLY SEQRES 18 A 297 LEU CYS PRO ASN ASN MET MET GLY THR PHE ALA VAL ARG SEQRES 19 A 297 VAL VAL SER ARG GLU ALA SER GLN LEU LYS LEU GLN THR SEQRES 20 A 297 ARG VAL TYR MET LYS LEU LYS HIS VAL ARG ALA TRP VAL SEQRES 21 A 297 PRO ARG PRO ILE ARG SER GLN PRO TYR LEU LEU LYS ASN SEQRES 22 A 297 PHE PRO ASN TYR ASP SER SER LYS ILE THR ASN SER ALA SEQRES 23 A 297 ARG ASP ARG SER SER ILE LYS GLN ALA ASN MET SEQRES 1 B 255 SER PRO SER VAL GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 255 ALA GLN LEU THR VAL GLY ASN SER SER ILE THR THR GLN SEQRES 3 B 255 GLU ALA ALA ASN ILE VAL LEU ALA TYR GLY GLU TRP PRO SEQRES 4 B 255 GLU TYR CYS PRO ASP THR ASP ALA THR ALA VAL ASP LYS SEQRES 5 B 255 PRO THR ARG PRO ASP VAL SER VAL ASN ARG PHE TYR THR SEQRES 6 B 255 LEU ASP SER LYS MET TRP GLN GLU ASN SER THR GLY TRP SEQRES 7 B 255 TYR TRP LYS PHE PRO ASP VAL LEU ASN LYS THR GLY VAL SEQRES 8 B 255 PHE GLY GLN ASN ALA GLN PHE HIS TYR LEU TYR ARG SER SEQRES 9 B 255 GLY PHE CYS LEU HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 255 HIS GLN GLY ALA LEU LEU VAL ALA VAL ILE PRO GLU PHE SEQRES 11 B 255 VAL ILE ALA GLY ARG GLY SER ASN THR LYS PRO ASN GLU SEQRES 12 B 255 ALA PRO HIS PRO GLY PHE THR THR THR PHE PRO GLY THR SEQRES 13 B 255 THR GLY ALA THR PHE HIS ASP PRO TYR VAL LEU ASP SER SEQRES 14 B 255 GLY VAL PRO LEU SER GLN ALA LEU ILE TYR PRO HIS GLN SEQRES 15 B 255 TRP VAL ASN LEU ARG THR ASN ASN CYS ALA THR VAL ILE SEQRES 16 B 255 VAL PRO TYR ILE ASN ALA VAL PRO PHE ASP SER ALA ILE SEQRES 17 B 255 ASN HIS SER ASN PHE GLY LEU VAL VAL VAL PRO VAL SER SEQRES 18 B 255 PRO LEU LYS TYR SER SER GLY ALA THR THR ALA ILE PRO SEQRES 19 B 255 ILE THR ILE THR ILE ALA PRO LEU ASN SER GLU PHE GLY SEQRES 20 B 255 GLY LEU ARG GLN ALA VAL SER GLN SEQRES 1 C 240 GLY ILE PRO ALA GLU LEU ARG PRO GLY THR ASN GLN PHE SEQRES 2 C 240 LEU THR THR ASP ASP ASP THR ALA ALA PRO ILE LEU PRO SEQRES 3 C 240 GLY PHE THR PRO THR PRO THR ILE HIS ILE PRO GLY GLU SEQRES 4 C 240 VAL HIS SER LEU LEU GLU LEU CYS ARG VAL GLU THR ILE SEQRES 5 C 240 LEU GLU VAL ASN ASN THR THR GLU ALA THR GLY LEU THR SEQRES 6 C 240 ARG LEU LEU ILE PRO VAL SER SER GLN ASN LYS ALA ASP SEQRES 7 C 240 GLU LEU CYS ALA ALA PHE MET VAL ASP PRO GLY ARG ILE SEQRES 8 C 240 GLY PRO TRP GLN SER THR LEU VAL GLY GLN ILE CYS ARG SEQRES 9 C 240 TYR TYR THR GLN TRP SER GLY SER LEU LYS VAL THR PHE SEQRES 10 C 240 MET PHE THR GLY SER PHE MET ALA THR GLY LYS MET LEU SEQRES 11 C 240 VAL ALA TYR SER PRO PRO GLY SER ALA GLN PRO ALA ASN SEQRES 12 C 240 ARG GLU THR ALA MET LEU GLY THR HIS VAL ILE TRP ASP SEQRES 13 C 240 PHE GLY LEU GLN SER SER VAL SER LEU VAL ILE PRO TRP SEQRES 14 C 240 ILE SER ASN THR HIS PHE ARG THR ALA LYS THR GLY GLY SEQRES 15 C 240 ASN TYR ASP TYR TYR THR ALA GLY VAL VAL THR LEU TRP SEQRES 16 C 240 TYR GLN THR ASN TYR VAL VAL PRO PRO GLU THR PRO GLY SEQRES 17 C 240 GLU ALA TYR ILE ILE ALA MET GLY ALA ALA GLN ASP ASN SEQRES 18 C 240 PHE THR LEU LYS ILE CYS LYS ASP THR ASP GLU VAL THR SEQRES 19 C 240 GLN GLN ALA VAL LEU GLN SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS SER GLY SER HIS SEQRES 2 D 69 GLU THR GLY ASN VAL ALA THR GLY GLY SER THR ILE ASN SEQRES 3 D 69 PHE THR ASN ILE ASN TYR TYR LYS ASP SER TYR ALA ALA SEQRES 4 D 69 SER ALA THR ARG GLN ASP PHE THR GLN ASP PRO LYS LYS SEQRES 5 D 69 PHE THR GLN PRO VAL LEU ASP SER ILE ARG GLU LEU SER SEQRES 6 D 69 ALA PRO LEU ASN HET SPH A 301 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 49 GLY A 53 5 5 HELIX 2 AA2 THR A 59 ILE A 64 1 6 HELIX 3 AA3 VAL A 75 THR A 78 5 4 HELIX 4 AA4 THR A 79 PHE A 84 1 6 HELIX 5 AA5 PHE A 114 GLU A 122 1 9 HELIX 6 AA6 ALA A 166 THR A 171 5 6 HELIX 7 AA7 CYS A 223 MET A 227 5 5 HELIX 8 AA8 TYR B 35 GLU B 37 5 3 HELIX 9 AA9 PRO B 56 VAL B 60 5 5 HELIX 10 AB1 PHE B 82 LEU B 86 1 5 HELIX 11 AB2 THR B 89 PHE B 98 1 10 HELIX 12 AB3 PRO B 154 GLY B 158 5 5 HELIX 13 AB4 ASP B 163 LEU B 167 5 5 HELIX 14 AB5 PRO B 172 TYR B 179 5 8 HELIX 15 AB6 SER C 42 VAL C 49 1 8 HELIX 16 AB7 LEU C 64 ARG C 66 5 3 HELIX 17 AB8 GLY C 92 SER C 96 5 5 HELIX 18 AB9 THR C 97 CYS C 103 1 7 HELIX 19 AC1 ASN C 143 MET C 148 1 6 HELIX 20 AC2 GLY C 181 THR C 188 5 8 HELIX 21 AC3 ASP D 35 ALA D 39 5 5 HELIX 22 AC4 PRO D 50 GLN D 55 1 6 SHEET 1 AA1 5 LEU A 47 GLN A 48 0 SHEET 2 AA1 5 SER C 162 ILE C 167 -1 O SER C 162 N GLN A 48 SHEET 3 AA1 5 LEU C 113 PHE C 119 -1 N VAL C 115 O LEU C 165 SHEET 4 AA1 5 GLU C 209 ALA C 218 -1 O ILE C 213 N MET C 118 SHEET 5 AA1 5 THR C 51 ILE C 52 -1 N THR C 51 O GLY C 216 SHEET 1 AA2 5 LEU A 47 GLN A 48 0 SHEET 2 AA2 5 SER C 162 ILE C 167 -1 O SER C 162 N GLN A 48 SHEET 3 AA2 5 LEU C 113 PHE C 119 -1 N VAL C 115 O LEU C 165 SHEET 4 AA2 5 GLU C 209 ALA C 218 -1 O ILE C 213 N MET C 118 SHEET 5 AA2 5 LEU C 68 SER C 72 -1 N VAL C 71 O ALA C 210 SHEET 1 AA3 5 GLY A 88 THR A 96 0 SHEET 2 AA3 5 LYS A 244 PRO A 261 -1 O LEU A 245 N LEU A 95 SHEET 3 AA3 5 PHE A 124 THR A 139 -1 N VAL A 136 O ARG A 248 SHEET 4 AA3 5 ALA A 186 VAL A 190 -1 O VAL A 190 N ALA A 131 SHEET 5 AA3 5 ALA C 22 PRO C 23 1 O ALA C 22 N SER A 189 SHEET 1 AA4 4 TYR A 199 GLN A 200 0 SHEET 2 AA4 4 PHE A 124 THR A 139 -1 N MET A 127 O TYR A 199 SHEET 3 AA4 4 LYS A 244 PRO A 261 -1 O ARG A 248 N VAL A 136 SHEET 4 AA4 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 258 SHEET 1 AA5 4 TYR A 104 ASP A 108 0 SHEET 2 AA5 4 THR A 230 VAL A 235 -1 O PHE A 231 N TRP A 107 SHEET 3 AA5 4 MET A 148 VAL A 154 -1 N VAL A 154 O THR A 230 SHEET 4 AA5 4 SER A 176 LYS A 180 -1 O VAL A 177 N TYR A 151 SHEET 1 AA6 2 ALA B 14 VAL B 18 0 SHEET 2 AA6 2 SER B 21 THR B 25 -1 O THR B 25 N ALA B 14 SHEET 1 AA7 5 VAL B 32 LEU B 33 0 SHEET 2 AA7 5 CYS B 191 VAL B 196 1 O ILE B 195 N VAL B 32 SHEET 3 AA7 5 HIS B 99 GLN B 111 -1 N PHE B 106 O VAL B 196 SHEET 4 AA7 5 PRO B 234 LEU B 249 -1 O LEU B 242 N GLY B 105 SHEET 5 AA7 5 TYR B 64 THR B 65 -1 N TYR B 64 O ILE B 239 SHEET 1 AA8 5 VAL B 32 LEU B 33 0 SHEET 2 AA8 5 CYS B 191 VAL B 196 1 O ILE B 195 N VAL B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N PHE B 106 O VAL B 196 SHEET 4 AA8 5 PRO B 234 LEU B 249 -1 O LEU B 242 N GLY B 105 SHEET 5 AA8 5 LYS B 69 MET B 70 -1 N LYS B 69 O ILE B 235 SHEET 1 AA9 5 ALA B 159 THR B 160 0 SHEET 2 AA9 5 TRP B 78 LYS B 81 -1 N TYR B 79 O ALA B 159 SHEET 3 AA9 5 PHE B 213 LYS B 224 -1 O VAL B 217 N TRP B 78 SHEET 4 AA9 5 GLN B 119 PRO B 128 -1 N GLN B 119 O LYS B 224 SHEET 5 AA9 5 HIS B 181 ASN B 185 -1 O GLN B 182 N VAL B 124 SHEET 1 AB1 4 LEU C 80 MET C 85 0 SHEET 2 AB1 4 VAL C 191 VAL C 201 -1 O LEU C 194 N ALA C 82 SHEET 3 AB1 4 THR C 126 SER C 134 -1 N LEU C 130 O TRP C 195 SHEET 4 AB1 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB2 3 ARG C 176 THR C 177 0 SHEET 2 AB2 3 TYR C 106 SER C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB2 3 THR C 223 CYS C 227 -1 O THR C 223 N SER C 110 SITE 1 AC1 13 ILE A 109 ASP A 110 ILE A 111 PHE A 133 SITE 2 AC1 13 TYR A 153 VAL A 190 MET A 193 TYR A 199 SITE 3 AC1 13 TRP A 201 ASN A 226 MET A 228 PHE A 231 SITE 4 AC1 13 ASN A 273 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010365 0.00000