HEADER VIRUS 19-OCT-18 6ILN TITLE CRYO-EM STRUCTURE OF FULL ECHOVIRUS 6 PARTICLE AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: CAPSID PROTEIN VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 3 ORGANISM_TAXID: 12062; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 6 ORGANISM_TAXID: 12062; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 9 ORGANISM_TAXID: 12062; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 12 ORGANISM_TAXID: 12062 KEYWDS VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR G.F.GAO,S.LIU,X.ZHAO,R.PENG REVDAT 6 27-MAR-24 6ILN 1 REMARK REVDAT 5 06-NOV-19 6ILN 1 CRYST1 SCALE REVDAT 4 12-JUN-19 6ILN 1 JRNL REVDAT 3 05-JUN-19 6ILN 1 JRNL REVDAT 2 29-MAY-19 6ILN 1 JRNL REVDAT 1 15-MAY-19 6ILN 0 JRNL AUTH X.ZHAO,G.ZHANG,S.LIU,X.CHEN,R.PENG,L.DAI,X.QU,S.LI,H.SONG, JRNL AUTH 2 Z.GAO,P.YUAN,Z.LIU,C.LI,Z.SHANG,Y.LI,M.ZHANG,J.QI,H.WANG, JRNL AUTH 3 N.DU,Y.WU,Y.BI,S.GAO,Y.SHI,J.YAN,Y.ZHANG,Z.XIE,W.WEI,G.F.GAO JRNL TITL HUMAN NEONATAL FC RECEPTOR IS THE CELLULAR UNCOATING JRNL TITL 2 RECEPTOR FOR ENTEROVIRUS B. JRNL REF CELL V. 177 1553 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31104841 JRNL DOI 10.1016/J.CELL.2019.04.035 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 4321 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ILN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009424. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.811348 -0.512907 -0.280431 237.52297 REMARK 350 BIOMT2 2 0.479509 0.309572 0.821119 -150.77318 REMARK 350 BIOMT3 2 -0.334344 -0.800682 0.497114 396.34930 REMARK 350 BIOMT1 3 0.506102 -0.350392 -0.788091 396.42068 REMARK 350 BIOMT2 3 0.262955 -0.807564 0.527916 241.89595 REMARK 350 BIOMT3 3 -0.821411 -0.474412 -0.316572 634.68720 REMARK 350 BIOMT1 4 0.506102 0.262955 -0.821411 257.10188 REMARK 350 BIOMT2 4 -0.350392 -0.807564 -0.474412 635.35200 REMARK 350 BIOMT3 4 -0.788091 0.527916 -0.316572 385.63883 REMARK 350 BIOMT1 5 0.811348 0.479509 -0.334344 12.10043 REMARK 350 BIOMT2 5 -0.512907 0.309572 -0.800682 485.85208 REMARK 350 BIOMT3 5 -0.280431 0.821119 0.497114 -6.61943 REMARK 350 BIOMT1 6 0.353672 0.782151 -0.512987 94.64173 REMARK 350 BIOMT2 6 0.782151 -0.548073 -0.296404 252.89248 REMARK 350 BIOMT3 6 -0.512987 -0.296404 -0.805599 635.32624 REMARK 350 BIOMT1 7 0.833514 0.471471 0.288045 -142.60248 REMARK 350 BIOMT2 7 0.470891 -0.333514 -0.816719 403.82673 REMARK 350 BIOMT3 7 -0.288992 0.816385 -0.500000 238.87130 REMARK 350 BIOMT1 8 0.806038 -0.512194 0.296582 98.45763 REMARK 350 BIOMT2 8 0.495198 0.309162 -0.811910 242.25310 REMARK 350 BIOMT3 8 0.324163 0.801297 0.502834 -151.03442 REMARK 350 BIOMT1 9 0.309215 -0.809451 -0.499175 484.68517 REMARK 350 BIOMT2 9 0.821481 0.491799 -0.288622 -8.53915 REMARK 350 BIOMT3 9 0.479119 -0.320816 0.817020 4.44553 REMARK 350 BIOMT1 10 0.029637 -0.009502 -0.999516 482.32682 REMARK 350 BIOMT2 10 0.998828 -0.038002 0.029978 -1.96365 REMARK 350 BIOMT3 10 -0.038268 -0.999232 0.008364 490.44315 REMARK 350 BIOMT1 11 -0.831053 -0.478431 -0.283646 631.49306 REMARK 350 BIOMT2 11 -0.478431 0.354840 0.803239 76.85404 REMARK 350 BIOMT3 11 -0.283646 0.803239 -0.523787 246.50326 REMARK 350 BIOMT1 12 -0.808850 0.505254 -0.300800 393.81074 REMARK 350 BIOMT2 12 -0.486583 -0.287900 0.824834 228.07847 REMARK 350 BIOMT3 12 0.330150 0.813531 0.478715 -149.57850 REMARK 350 BIOMT1 13 -0.313414 0.812122 0.492168 6.28974 REMARK 350 BIOMT2 13 -0.808617 -0.499984 0.310090 482.83374 REMARK 350 BIOMT3 13 0.497907 -0.300789 0.813397 -4.08034 REMARK 350 BIOMT1 14 -0.029421 0.018093 0.999403 4.47092 REMARK 350 BIOMT2 14 -0.999493 0.011681 -0.029635 489.05672 REMARK 350 BIOMT3 14 -0.012210 -0.999768 0.017740 481.92424 REMARK 350 BIOMT1 15 -0.349339 -0.779513 0.519924 390.86782 REMARK 350 BIOMT2 15 -0.795427 0.539991 0.275148 238.14747 REMARK 350 BIOMT3 15 -0.495236 -0.317442 -0.808686 636.79342 REMARK 350 BIOMT1 16 -0.522619 -0.303720 0.796632 251.64167 REMARK 350 BIOMT2 16 -0.303720 -0.806767 -0.506835 631.62946 REMARK 350 BIOMT3 16 0.796632 -0.506835 0.329386 90.01605 REMARK 350 BIOMT1 17 -0.836012 -0.463818 0.293186 489.04522 REMARK 350 BIOMT2 17 -0.463818 0.311841 -0.829233 480.24396 REMARK 350 BIOMT3 17 0.293186 -0.829233 -0.475830 486.20346 REMARK 350 BIOMT1 18 -0.998726 0.050463 -0.000659 476.60842 REMARK 350 BIOMT2 18 0.050463 0.998385 -0.026096 -5.60681 REMARK 350 BIOMT3 18 -0.000659 -0.026096 -0.999659 492.27311 REMARK 350 BIOMT1 19 -0.785896 0.528403 0.321182 231.51849 REMARK 350 BIOMT2 19 0.528403 0.304084 0.792668 -154.49360 REMARK 350 BIOMT3 19 0.321182 0.792668 -0.518188 99.83696 REMARK 350 BIOMT1 20 -0.491646 0.309506 0.813935 92.48139 REMARK 350 BIOMT2 20 0.309506 -0.811561 0.495555 239.34008 REMARK 350 BIOMT3 20 0.813935 0.495555 0.303207 -148.77158 REMARK 350 BIOMT1 21 -0.304822 -0.819026 -0.486086 633.90425 REMARK 350 BIOMT2 21 0.795992 -0.499320 0.342162 82.64473 REMARK 350 BIOMT3 21 -0.522952 -0.282622 0.804143 243.34485 REMARK 350 BIOMT1 22 -0.477528 0.291998 -0.828676 492.32941 REMARK 350 BIOMT2 22 0.291998 -0.836809 -0.463128 482.61119 REMARK 350 BIOMT3 22 -0.828676 -0.463128 0.314337 480.46483 REMARK 350 BIOMT1 23 0.029637 0.998828 -0.038268 6.43486 REMARK 350 BIOMT2 23 -0.009502 -0.038002 -0.999232 494.57512 REMARK 350 BIOMT3 23 -0.999516 0.029978 0.008364 478.04973 REMARK 350 BIOMT1 24 0.515788 0.324649 0.792821 -152.28965 REMARK 350 BIOMT2 24 0.308156 0.793177 -0.525272 102.00277 REMARK 350 BIOMT3 24 -0.799376 0.515242 0.309069 239.43714 REMARK 350 BIOMT1 25 0.309081 -0.798847 0.516055 235.50775 REMARK 350 BIOMT2 25 0.805979 0.508066 0.303755 -152.58421 REMARK 350 BIOMT3 25 -0.504844 0.322044 0.800887 94.38155 REMARK 350 BIOMT1 26 -0.499054 0.354547 0.790722 89.10676 REMARK 350 BIOMT2 26 -0.284549 0.794832 -0.535979 249.08921 REMARK 350 BIOMT3 26 -0.818521 -0.492481 -0.295778 633.27181 REMARK 350 BIOMT1 27 -0.499271 -0.267391 0.824155 230.51605 REMARK 350 BIOMT2 27 0.329463 0.821154 0.466005 -150.77192 REMARK 350 BIOMT3 27 -0.801363 0.504191 -0.321883 395.87557 REMARK 350 BIOMT1 28 -0.808850 -0.486583 0.330150 478.89618 REMARK 350 BIOMT2 28 0.505254 -0.287900 0.813531 -11.62396 REMARK 350 BIOMT3 28 -0.300800 0.824834 0.478715 1.93695 REMARK 350 BIOMT1 29 -0.999963 -0.000113 -0.008593 490.99425 REMARK 350 BIOMT2 29 -0.000113 -0.999653 0.026329 474.23534 REMARK 350 BIOMT3 29 -0.008593 0.026329 0.999616 -4.13428 REMARK 350 BIOMT1 30 -0.808499 0.519734 0.276056 250.09114 REMARK 350 BIOMT2 30 -0.488238 -0.330488 -0.807714 635.36494 REMARK 350 BIOMT3 30 -0.328563 -0.787816 0.520953 386.05213 REMARK 350 BIOMT1 31 0.783047 -0.535229 -0.316807 258.64386 REMARK 350 BIOMT2 31 -0.519674 -0.283168 -0.806073 631.27781 REMARK 350 BIOMT3 31 0.341725 0.795830 -0.499879 89.60717 REMARK 350 BIOMT1 32 0.484598 -0.313661 -0.816567 399.76764 REMARK 350 BIOMT2 32 -0.287913 0.824292 -0.487493 231.05073 REMARK 350 BIOMT3 32 0.825997 0.471338 0.309144 -147.34188 REMARK 350 BIOMT1 33 0.515788 0.308156 -0.799376 238.51687 REMARK 350 BIOMT2 33 0.324649 0.793177 0.515242 -154.83357 REMARK 350 BIOMT3 33 0.792821 -0.525272 0.309069 100.31510 REMARK 350 BIOMT1 34 0.833514 0.470891 -0.288992 -2.26537 REMARK 350 BIOMT2 34 0.471471 -0.333514 0.816385 6.90390 REMARK 350 BIOMT3 34 0.288045 -0.816719 -0.500000 490.32458 REMARK 350 BIOMT1 35 0.998689 -0.050350 0.009252 10.17380 REMARK 350 BIOMT2 35 -0.050350 -0.998732 -0.000233 492.74745 REMARK 350 BIOMT3 35 0.009252 -0.000233 -0.999957 483.70672 REMARK 350 BIOMT1 36 0.020829 0.999709 0.012170 -3.87840 REMARK 350 BIOMT2 36 0.008231 -0.012344 0.999890 -1.63578 REMARK 350 BIOMT3 36 0.999749 -0.020727 -0.008485 5.62172 REMARK 350 BIOMT1 37 0.492200 0.289054 0.821089 -144.83663 REMARK 350 BIOMT2 37 -0.333548 -0.808637 0.484616 398.48598 REMARK 350 BIOMT3 37 0.804042 -0.512401 -0.301598 242.84702 REMARK 350 BIOMT1 38 0.263424 -0.820401 0.507494 253.92856 REMARK 350 BIOMT2 38 -0.820401 -0.467275 -0.329540 633.25839 REMARK 350 BIOMT3 38 0.507494 -0.329540 -0.796149 391.54377 REMARK 350 BIOMT1 39 -0.349339 -0.795427 -0.495236 641.33724 REMARK 350 BIOMT2 39 -0.779513 0.539991 -0.317442 378.23397 REMARK 350 BIOMT3 39 0.519924 0.275148 -0.808685 246.21810 REMARK 350 BIOMT1 40 -0.499271 0.329463 -0.801363 482.00377 REMARK 350 BIOMT2 40 -0.267391 0.821154 0.504191 -14.15221 REMARK 350 BIOMT3 40 0.824154 0.466005 -0.321883 7.70516 REMARK 350 BIOMT1 41 -0.304822 0.795992 -0.522953 254.70141 REMARK 350 BIOMT2 41 -0.819026 -0.499320 -0.282622 629.22499 REMARK 350 BIOMT3 41 -0.486086 0.342162 0.804143 84.16985 REMARK 350 BIOMT1 42 0.309215 0.821481 0.479119 -144.98708 REMARK 350 BIOMT2 42 -0.809451 0.491799 -0.320816 397.95462 REMARK 350 BIOMT3 42 -0.499175 -0.288622 0.817020 235.84585 REMARK 350 BIOMT1 43 0.484598 -0.287913 0.825997 -5.50039 REMARK 350 BIOMT2 43 -0.313661 0.824292 0.471338 4.38602 REMARK 350 BIOMT3 43 -0.816567 -0.487493 0.309144 484.62226 REMARK 350 BIOMT1 44 -0.021046 -0.999044 0.038308 480.39562 REMARK 350 BIOMT2 44 -0.016821 0.038665 0.999111 -7.58237 REMARK 350 BIOMT3 44 -0.999637 0.020383 -0.017619 486.69855 REMARK 350 BIOMT1 45 -0.508935 -0.329154 -0.795388 641.20917 REMARK 350 BIOMT2 45 -0.329154 -0.779372 0.533138 378.58935 REMARK 350 BIOMT3 45 -0.795388 0.533138 0.288307 239.20534 REMARK 350 BIOMT1 46 0.783047 -0.519674 0.341725 94.90755 REMARK 350 BIOMT2 46 -0.535229 -0.283168 0.795830 245.87951 REMARK 350 BIOMT3 46 -0.316807 -0.806073 -0.499879 635.58916 REMARK 350 BIOMT1 47 0.271881 -0.836120 -0.476429 494.69452 REMARK 350 BIOMT2 47 -0.836120 -0.450345 0.313199 476.87100 REMARK 350 BIOMT3 47 -0.476429 0.313199 -0.821537 483.74782 REMARK 350 BIOMT1 48 -0.021046 -0.016821 -0.999637 496.50479 REMARK 350 BIOMT2 48 -0.999044 0.038665 0.020383 470.30931 REMARK 350 BIOMT3 48 0.038308 0.999111 -0.017619 -2.25233 REMARK 350 BIOMT1 49 0.309081 0.805979 -0.504844 97.83663 REMARK 350 BIOMT2 49 -0.798847 0.508066 0.322044 235.26247 REMARK 350 BIOMT3 49 0.516055 0.303755 0.800887 -150.77560 REMARK 350 BIOMT1 50 0.806038 0.495198 0.324163 -150.36412 REMARK 350 BIOMT2 50 -0.512194 0.309162 0.801297 96.55723 REMARK 350 BIOMT3 50 0.296582 -0.811910 0.502834 243.43212 REMARK 350 BIOMT1 51 0.020829 0.008231 0.999749 -5.52606 REMARK 350 BIOMT2 51 0.999709 -0.012344 -0.020727 3.97360 REMARK 350 BIOMT3 51 0.012170 0.999890 -0.008485 1.73050 REMARK 350 BIOMT1 52 -0.313414 -0.808617 0.497907 394.43028 REMARK 350 BIOMT2 52 0.812122 -0.499984 -0.300789 235.07356 REMARK 350 BIOMT3 52 0.492168 0.310090 0.813397 -149.49851 REMARK 350 BIOMT1 53 -0.808499 -0.488238 -0.328563 639.25000 REMARK 350 BIOMT2 53 0.519734 -0.330488 -0.787816 384.13798 REMARK 350 BIOMT3 53 0.276056 -0.807714 0.520953 243.03887 REMARK 350 BIOMT1 54 -0.780235 0.526614 -0.337506 390.60055 REMARK 350 BIOMT2 54 0.526614 0.261905 -0.808754 245.16490 REMARK 350 BIOMT3 54 -0.337506 -0.808754 -0.481670 636.86931 REMARK 350 BIOMT1 55 -0.267682 0.833448 0.483435 -7.89297 REMARK 350 BIOMT2 55 0.823255 0.458529 -0.334667 10.21039 REMARK 350 BIOMT3 55 -0.500597 0.308406 -0.808881 487.73254 REMARK 350 BIOMT1 56 -0.499054 -0.284549 -0.818521 633.69357 REMARK 350 BIOMT2 56 0.354547 0.794832 -0.492481 82.29787 REMARK 350 BIOMT3 56 0.790722 -0.535979 -0.295778 250.35604 REMARK 350 BIOMT1 57 -0.267682 0.823255 -0.500597 233.63874 REMARK 350 BIOMT2 57 0.833448 0.458529 0.308406 -148.52320 REMARK 350 BIOMT3 57 0.483435 -0.334667 -0.808881 401.75039 REMARK 350 BIOMT1 58 0.344947 0.792972 0.502203 -152.47793 REMARK 350 BIOMT2 58 0.792972 -0.532469 0.296096 102.54267 REMARK 350 BIOMT3 58 0.502203 0.296096 -0.812478 246.43675 REMARK 350 BIOMT1 59 0.492200 -0.333548 0.804042 8.94367 REMARK 350 BIOMT2 59 0.289054 -0.808637 -0.512401 488.53097 REMARK 350 BIOMT3 59 0.821089 0.484616 -0.301598 -0.94670 REMARK 350 BIOMT1 60 -0.029421 -0.999493 -0.012210 494.82438 REMARK 350 BIOMT2 60 0.018093 0.011681 -0.999768 476.01900 REMARK 350 BIOMT3 60 0.999403 -0.029635 0.017740 1.47555 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR D 15 REMARK 465 SER D 16 REMARK 465 LEU D 17 REMARK 465 SER D 18 REMARK 465 ALA D 19 REMARK 465 SER D 20 REMARK 465 GLY D 21 REMARK 465 ASN D 22 REMARK 465 SER D 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 83 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 37.86 -98.30 REMARK 500 ARG A 132 50.56 -116.06 REMARK 500 THR A 166 -31.41 -131.26 REMARK 500 ASN A 214 -76.50 -66.46 REMARK 500 ASN A 215 56.79 37.65 REMARK 500 VAL A 249 81.74 41.52 REMARK 500 THR A 259 -51.14 -120.84 REMARK 500 THR A 276 -3.92 68.48 REMARK 500 SER A 283 -161.50 -79.55 REMARK 500 ASN B 30 -169.55 -166.79 REMARK 500 TYR B 35 40.84 -108.84 REMARK 500 ASP B 57 -10.25 73.27 REMARK 500 CYS B 121 119.62 -160.24 REMARK 500 ASN B 148 16.48 -142.16 REMARK 500 SER C 16 35.31 -93.22 REMARK 500 ASN C 56 34.67 -93.49 REMARK 500 ASN C 59 71.63 41.20 REMARK 500 GLU C 60 10.88 84.38 REMARK 500 ASN C 63 46.23 -93.14 REMARK 500 GLU C 77 -74.79 -95.78 REMARK 500 THR C 78 174.51 175.22 REMARK 500 ALA C 91 -32.41 -131.38 REMARK 500 THR C 185 79.23 -102.08 REMARK 500 ARG C 223 -53.46 -121.70 REMARK 500 TYR C 237 42.79 -106.63 REMARK 500 HIS D 12 -2.22 71.65 REMARK 500 ARG D 42 31.49 -95.40 REMARK 500 ASP D 48 88.12 -159.64 REMARK 500 PRO D 49 41.41 -86.70 REMARK 500 PRO D 55 46.62 -90.97 REMARK 500 ASP D 58 71.42 59.57 REMARK 500 LYS D 62 -12.04 71.60 REMARK 500 ALA D 66 78.22 59.66 REMARK 500 LEU D 67 25.94 90.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 82 PRO B 83 135.94 REMARK 500 ALA D 66 LEU D 67 -139.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9688 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF FULL ECHOVIRUS 6 PARTICLE AT PH 5.5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS MH830353.1 FOR REMARK 999 THE PROTEIN. DBREF 6ILN A 11 285 PDB 6ILN 6ILN 11 285 DBREF 6ILN B 10 261 PDB 6ILN 6ILN 10 261 DBREF 6ILN C 1 238 PDB 6ILN 6ILN 1 238 DBREF 6ILN D 1 68 PDB 6ILN 6ILN 1 68 SEQRES 1 A 275 VAL VAL ARG VAL ALA ASP THR MET PRO SER GLY PRO SER SEQRES 2 A 275 ASN SER GLU SER ILE PRO ALA LEU THR ALA ALA GLU THR SEQRES 3 A 275 GLY HIS THR SER GLN VAL VAL PRO SER ASP THR ILE GLN SEQRES 4 A 275 THR ARG HIS VAL ARG ASN PHE HIS VAL ARG SER GLU SER SEQRES 5 A 275 SER VAL GLU ASN PHE LEU SER ARG SER ALA CYS VAL TYR SEQRES 6 A 275 ILE VAL GLU TYR LYS THR ARG ASP ASP THR PRO ASP LYS SEQRES 7 A 275 MET TYR ASP SER TRP VAL ILE ASN THR ARG GLN VAL ALA SEQRES 8 A 275 GLN LEU ARG ARG LYS LEU GLU PHE PHE THR TYR VAL ARG SEQRES 9 A 275 PHE ASP VAL GLU VAL THR PHE VAL ILE THR SER VAL GLN SEQRES 10 A 275 ASP ASP SER THR ARG GLN ASN THR ASP THR PRO ALA LEU SEQRES 11 A 275 THR HIS GLN ILE MET TYR VAL PRO PRO GLY GLY PRO ILE SEQRES 12 A 275 PRO GLN ALA VAL ASP ASP TYR ASN TRP GLN THR SER THR SEQRES 13 A 275 ASN PRO SER VAL PHE TRP THR GLU GLY ASN ALA PRO PRO SEQRES 14 A 275 ARG MET SER ILE PRO PHE MET SER VAL GLY ASN ALA TYR SEQRES 15 A 275 SER ASN PHE TYR ASP GLY TRP SER HIS PHE SER GLN THR SEQRES 16 A 275 GLY VAL TYR GLY PHE ASN THR LEU ASN ASN MET GLY LYS SEQRES 17 A 275 LEU TYR PHE ARG HIS VAL ASN ASP LYS THR ILE SER PRO SEQRES 18 A 275 ILE THR SER LYS VAL ARG ILE TYR PHE LYS PRO LYS HIS SEQRES 19 A 275 VAL LYS ALA TRP VAL PRO ARG PRO PRO ARG LEU CYS GLU SEQRES 20 A 275 TYR THR HIS LYS ASP ASN VAL ASP PHE GLU PRO LYS GLY SEQRES 21 A 275 VAL THR THR SER ARG THR GLN LEU THR ILE SER ASN SER SEQRES 22 A 275 THR HIS SEQRES 1 B 252 SER ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR SEQRES 2 B 252 ILE THR THR GLN GLU SER ALA ASN VAL VAL VAL GLY TYR SEQRES 3 B 252 GLY VAL TRP PRO ASP TYR LEU SER ASP GLU GLU ALA THR SEQRES 4 B 252 ALA GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS SEQRES 5 B 252 ARG PHE TYR THR LEU ASP SER VAL SER TRP MET LYS GLU SEQRES 6 B 252 SER GLN GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU ARG SEQRES 7 B 252 ASP MET GLY LEU PHE GLY GLN ASN MET GLN TYR HIS TYR SEQRES 8 B 252 LEU GLY ARG SER GLY TYR THR ILE HIS VAL GLN CYS ASN SEQRES 9 B 252 ALA SER LYS PHE HIS GLN GLY CYS LEU LEU VAL VAL CYS SEQRES 10 B 252 VAL PRO GLU ALA GLU MET GLY ALA ALA ASN ILE ASN GLU SEQRES 11 B 252 LYS ILE ASN ARG GLU HIS LEU SER ASN GLY GLU VAL ALA SEQRES 12 B 252 ASN THR PHE SER GLY THR LYS SER SER ASN THR ASN ASP SEQRES 13 B 252 VAL GLN GLN ALA VAL PHE ASN ALA GLY MET GLY VAL ALA SEQRES 14 B 252 VAL GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN SEQRES 15 B 252 LEU ARG THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR SEQRES 16 B 252 ILE ASN SER VAL PRO MET ASP ASN MET PHE ARG HIS TYR SEQRES 17 B 252 ASN PHE THR LEU MET ILE ILE PRO PHE ALA LYS LEU ASP SEQRES 18 B 252 TYR ALA ALA GLY SER SER THR TYR ILE PRO ILE THR VAL SEQRES 19 B 252 THR VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG SEQRES 20 B 252 LEU ALA GLY HIS GLN SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP TYR GLN SER PRO THR ALA MET PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO GLU MET ASN ILE PRO GLY GLU SEQRES 4 C 238 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL ASN GLU ASN VAL ASN SER LEU SEQRES 6 C 238 GLU ALA TYR ARG ILE PRO VAL HIS SER VAL THR GLU THR SEQRES 7 C 238 GLY ALA GLN VAL PHE GLY PHE THR LEU GLN PRO GLY ALA SEQRES 8 C 238 ASP THR VAL MET GLU ARG THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA ASN TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 238 PHE MET TYR CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU LEU ALA TYR SER PRO PRO GLY ALA GLY VAL PRO LYS SEQRES 12 C 238 ASN ARG ARG GLU ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS VAL LEU CYS VAL PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG PHE VAL SER LYS ASP SEQRES 15 C 238 ILE TYR THR ASP ALA GLY PHE ILE THR CYS TRP TYR GLN SEQRES 16 C 238 THR SER ILE VAL VAL PRO ALA GLU VAL GLN ASN GLN SER SEQRES 17 C 238 VAL ILE LEU CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU ARG ASP SER PRO PHE VAL ARG GLN THR SEQRES 19 C 238 ALA PHE TYR GLN SEQRES 1 D 67 GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS GLU SEQRES 2 D 67 THR SER LEU SER ALA SER GLY ASN SER ILE HIS TYR THR SEQRES 3 D 67 ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SER ALA SEQRES 4 D 67 ASN ARG GLN ASP PHE THR GLN ASP PRO GLY LYS PHE THR SEQRES 5 D 67 GLU PRO VAL LYS ASP ILE MET VAL LYS SER LEU PRO ALA SEQRES 6 D 67 LEU ASN HET SPH A 301 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 33 GLY A 37 5 5 HELIX 2 AA2 VAL A 43 THR A 47 5 5 HELIX 3 AA3 SER A 63 SER A 69 1 7 HELIX 4 AA4 THR A 85 MET A 89 5 5 HELIX 5 AA5 VAL A 100 GLU A 108 1 9 HELIX 6 AA6 MET B 89 HIS B 99 1 11 HELIX 7 AA7 ASN B 142 SER B 147 1 6 HELIX 8 AA8 ALA B 178 PHE B 185 5 8 HELIX 9 AA9 ASN C 42 GLU C 48 1 7 HELIX 10 AB1 LEU C 65 ARG C 69 5 5 HELIX 11 AB2 THR C 98 TYR C 106 1 9 HELIX 12 AB3 ASN C 144 MET C 149 1 6 HELIX 13 AB4 ASP D 34 ASN D 38 5 5 SHEET 1 AA1 5 LEU A 31 THR A 32 0 SHEET 2 AA1 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA1 5 ILE C 114 TYR C 120 -1 N LEU C 116 O LEU C 166 SHEET 4 AA1 5 SER C 208 ALA C 216 -1 O LEU C 211 N MET C 119 SHEET 5 AA1 5 SER C 51 VAL C 52 -1 N SER C 51 O VAL C 214 SHEET 1 AA2 5 LEU A 31 THR A 32 0 SHEET 2 AA2 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA2 5 ILE C 114 TYR C 120 -1 N LEU C 116 O LEU C 166 SHEET 4 AA2 5 SER C 208 ALA C 216 -1 O LEU C 211 N MET C 119 SHEET 5 AA2 5 ILE C 70 VAL C 72 -1 N VAL C 72 O SER C 208 SHEET 1 AA3 4 ALA A 72 LYS A 80 0 SHEET 2 AA3 4 ILE A 232 PRO A 250 -1 O SER A 234 N TYR A 79 SHEET 3 AA3 4 PHE A 110 GLN A 127 -1 N ASP A 116 O LYS A 243 SHEET 4 AA3 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA4 4 ARG A 180 ILE A 183 0 SHEET 2 AA4 4 PHE A 110 GLN A 127 -1 N VAL A 117 O ILE A 183 SHEET 3 AA4 4 ILE A 232 PRO A 250 -1 O LYS A 243 N ASP A 116 SHEET 4 AA4 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 247 SHEET 1 AA5 4 ASP A 91 VAL A 94 0 SHEET 2 AA5 4 LYS A 218 HIS A 223 -1 O PHE A 221 N ASP A 91 SHEET 3 AA5 4 THR A 141 VAL A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA5 4 SER A 169 THR A 173 -1 O VAL A 170 N ILE A 144 SHEET 1 AA6 2 ARG B 14 THR B 17 0 SHEET 2 AA6 2 THR B 22 THR B 25 -1 O THR B 25 N ARG B 14 SHEET 1 AA7 3 TYR B 64 THR B 65 0 SHEET 2 AA7 3 PRO B 240 ASN B 253 -1 O VAL B 245 N TYR B 64 SHEET 3 AA7 3 VAL B 69 SER B 70 -1 N VAL B 69 O ILE B 241 SHEET 1 AA8 6 TYR B 64 THR B 65 0 SHEET 2 AA8 6 PRO B 240 ASN B 253 -1 O VAL B 245 N TYR B 64 SHEET 3 AA8 6 LEU B 101 GLN B 111 -1 N GLN B 111 O THR B 242 SHEET 4 AA8 6 CYS B 197 MET B 202 -1 O ILE B 200 N ILE B 108 SHEET 5 AA8 6 VAL B 31 VAL B 33 1 N VAL B 32 O VAL B 201 SHEET 6 AA8 6 VAL D 56 LYS D 57 -1 O LYS D 57 N VAL B 31 SHEET 1 AA9 5 ASN B 153 THR B 154 0 SHEET 2 AA9 5 TRP B 78 LYS B 81 -1 N TRP B 79 O ASN B 153 SHEET 3 AA9 5 PHE B 219 ASP B 230 -1 O LEU B 221 N TRP B 80 SHEET 4 AA9 5 GLN B 119 PRO B 128 -1 N VAL B 125 O MET B 222 SHEET 5 AA9 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AB1 4 GLN C 81 THR C 86 0 SHEET 2 AB1 4 PHE C 189 VAL C 199 -1 O CYS C 192 N VAL C 82 SHEET 3 AB1 4 THR C 127 SER C 135 -1 N LEU C 131 O TRP C 193 SHEET 4 AB1 4 ILE C 155 ASP C 157 -1 O TRP C 156 N PHE C 130 SHEET 1 AB2 3 ARG C 177 PHE C 178 0 SHEET 2 AB2 3 ASN C 109 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB2 3 SER C 221 VAL C 222 -1 O SER C 221 N SER C 111 SHEET 1 AB3 2 GLN D 3 SER D 5 0 SHEET 2 AB3 2 TYR D 26 ASN D 28 -1 O ASN D 28 N GLN D 3 SITE 1 AC1 7 THR A 97 PHE A 115 ILE A 144 TYR A 146 SITE 2 AC1 7 ILE A 183 TYR A 192 ASN A 194 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000