data_6J12 # _entry.id 6J12 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6J12 pdb_00006j12 10.2210/pdb6j12/pdb WWPDB D_1300010260 ? ? BMRB 36228 ? 10.13018/BMR36228 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-16 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6J12 _pdbx_database_status.recvd_initial_deposition_date 2018-12-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Three-dimensional Solution NMR Structure of KYE28-PEG48 in Microgel.' _pdbx_database_related.db_id 36228 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ilyas, H.' 1 ? 'Bhunia, A.' 2 0000-0002-8752-2842 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Colloids Surf A Physicochem Eng Asp' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0927-7757 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 565 _citation.language ? _citation.page_first 8 _citation.page_last 15 _citation.title 'Three-dimensional Solution NMR Structure of KYE28-PEG48 in Microgel.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.colsurfa.2018.12.049 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nordstrom, R.' 1 ? primary 'Nystrom, L.' 2 0000-0002-8752-2842 primary 'Ilyas, H.' 3 ? primary 'Atreya, H.S.' 4 ? primary 'Borro, B.C.' 5 ? primary 'Bhunia, A.' 6 ? primary 'Malmsten, M.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Heparin cofactor 2' _entity.formula_weight 3604.239 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name KYE28-PEG48 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KYEITTIHNLFRKLTHRLFRRNFGYTLR _entity_poly.pdbx_seq_one_letter_code_can KYEITTIHNLFRKLTHRLFRRNFGYTLR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 TYR n 1 3 GLU n 1 4 ILE n 1 5 THR n 1 6 THR n 1 7 ILE n 1 8 HIS n 1 9 ASN n 1 10 LEU n 1 11 PHE n 1 12 ARG n 1 13 LYS n 1 14 LEU n 1 15 THR n 1 16 HIS n 1 17 ARG n 1 18 LEU n 1 19 PHE n 1 20 ARG n 1 21 ARG n 1 22 ASN n 1 23 PHE n 1 24 GLY n 1 25 TYR n 1 26 THR n 1 27 LEU n 1 28 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 28 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J12 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6J12 _struct.title 'Three-dimensional Solution NMR Structure of KYE28-PEG48 in Microgel' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J12 _struct_keywords.text 'Antimicrobial peptide, Drug delivery, Microgel, PEGylation, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HEP2_HUMAN _struct_ref.pdbx_db_accession P05546 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KYEITTIHNLFRKLTHRLFRRNFGYTLR _struct_ref.pdbx_align_begin 192 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6J12 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05546 _struct_ref_seq.db_align_beg 192 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 219 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id PHE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 19 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 28 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PHE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 19 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 28 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 2 ? ? -120.46 -75.67 2 1 ILE A 7 ? ? -108.24 -75.46 3 1 HIS A 8 ? ? -120.94 -67.14 4 1 LEU A 10 ? ? -51.41 -75.15 5 1 ARG A 12 ? ? -96.24 30.01 6 1 THR A 15 ? ? -119.70 71.94 7 2 TYR A 2 ? ? -120.50 -75.64 8 2 ILE A 7 ? ? -120.12 -76.15 9 2 ARG A 12 ? ? -120.43 -79.11 10 2 ARG A 21 ? ? -116.10 -75.08 11 3 TYR A 2 ? ? -121.10 -79.73 12 3 ILE A 7 ? ? -120.20 -72.91 13 3 ASN A 9 ? ? -51.90 -75.16 14 3 ARG A 12 ? ? -110.07 -71.07 15 3 ARG A 17 ? ? -57.97 -75.04 16 4 TYR A 2 ? ? -105.93 -69.85 17 4 ILE A 7 ? ? -59.68 -75.54 18 4 LEU A 10 ? ? -118.35 52.64 19 4 ARG A 12 ? ? -114.18 72.65 20 4 THR A 15 ? ? -119.53 71.75 21 5 TYR A 2 ? ? -120.46 -75.51 22 5 ILE A 7 ? ? -120.24 -78.33 23 5 HIS A 8 ? ? -123.40 -74.28 24 5 ARG A 12 ? ? -120.02 -75.46 25 5 THR A 15 ? ? -51.12 -74.93 26 6 TYR A 2 ? ? -120.76 -75.98 27 6 THR A 6 ? ? -51.28 -75.74 28 6 ILE A 7 ? ? -109.02 -84.66 29 6 HIS A 8 ? ? -124.58 -77.99 30 6 LEU A 10 ? ? -50.94 -77.07 31 6 LEU A 14 ? ? -93.54 39.30 32 6 THR A 15 ? ? -92.79 -79.52 33 6 ARG A 17 ? ? -64.87 -79.89 34 7 TYR A 2 ? ? -120.27 -75.37 35 7 ILE A 7 ? ? -111.84 -74.62 36 7 LYS A 13 ? ? -69.48 -75.54 37 7 THR A 15 ? ? -116.63 70.85 38 7 ARG A 17 ? ? -51.91 -75.10 39 8 TYR A 2 ? ? -120.59 -75.66 40 8 THR A 6 ? ? -107.71 -83.73 41 8 ILE A 7 ? ? -122.97 -79.17 42 8 ASN A 9 ? ? -53.21 -75.65 43 8 LYS A 13 ? ? -93.88 -77.83 44 8 THR A 15 ? ? -109.05 68.22 45 8 ARG A 17 ? ? -78.57 -75.57 46 9 TYR A 2 ? ? -121.35 -77.32 47 9 ILE A 7 ? ? -120.40 -74.00 48 9 ASN A 9 ? ? -51.24 -74.94 49 9 PHE A 11 ? ? -69.70 84.58 50 9 ARG A 12 ? ? -120.27 -75.31 51 9 ARG A 17 ? ? -51.72 -75.55 52 10 TYR A 2 ? ? -120.70 -74.60 53 10 ILE A 7 ? ? -120.20 -81.10 54 10 HIS A 8 ? ? -123.26 -73.86 55 10 LEU A 10 ? ? -100.99 72.62 56 10 LEU A 14 ? ? -95.99 33.44 57 10 THR A 15 ? ? -119.97 71.89 58 10 ARG A 17 ? ? -94.75 -75.08 59 10 THR A 26 ? ? -90.15 -74.78 60 10 LEU A 27 ? ? -88.63 -75.01 61 11 TYR A 2 ? ? -120.48 -75.68 62 11 ILE A 7 ? ? -120.42 -86.24 63 11 THR A 15 ? ? -51.07 -80.10 64 11 ARG A 17 ? ? -114.09 -77.98 65 11 ARG A 21 ? ? -114.97 -75.19 66 11 THR A 26 ? ? -84.15 -74.73 67 12 TYR A 2 ? ? -120.08 -74.83 68 12 ILE A 7 ? ? -120.28 -76.31 69 12 ASN A 9 ? ? -62.17 -75.34 70 12 THR A 15 ? ? -64.35 -74.75 71 12 ARG A 17 ? ? -51.72 -75.31 72 12 THR A 26 ? ? -88.85 -74.74 73 13 TYR A 2 ? ? -120.45 -76.14 74 13 ILE A 7 ? ? -120.37 -85.89 75 13 LYS A 13 ? ? -51.96 -76.00 76 13 HIS A 16 ? ? -42.44 101.94 77 14 TYR A 2 ? ? -120.49 -75.65 78 14 THR A 6 ? ? -105.48 45.20 79 14 ILE A 7 ? ? -47.77 -86.23 80 14 PHE A 11 ? ? -67.52 88.43 81 15 TYR A 2 ? ? -116.41 -76.96 82 15 THR A 5 ? ? -49.38 -75.90 83 15 THR A 6 ? ? -121.39 -81.97 84 15 ILE A 7 ? ? -122.50 -87.63 85 15 THR A 15 ? ? -51.44 -74.59 86 15 ARG A 17 ? ? -52.09 -75.01 87 16 TYR A 2 ? ? -120.48 -75.78 88 16 ILE A 7 ? ? -105.45 -75.57 89 16 HIS A 8 ? ? -120.93 -67.29 90 16 LEU A 10 ? ? -51.28 -74.98 91 16 LYS A 13 ? ? -65.70 -83.24 92 16 LEU A 14 ? ? -120.87 -91.83 93 16 THR A 15 ? ? -122.80 -85.96 94 16 ARG A 17 ? ? -49.22 -75.54 95 17 TYR A 2 ? ? -120.96 -82.41 96 17 ILE A 7 ? ? -120.04 -75.04 97 17 LEU A 14 ? ? -95.22 37.72 98 17 THR A 15 ? ? -119.63 72.01 99 17 ARG A 17 ? ? -106.67 -75.03 100 17 THR A 26 ? ? -98.65 -74.82 101 17 LEU A 27 ? ? -106.78 59.19 102 18 TYR A 2 ? ? -115.37 -74.85 103 18 ILE A 7 ? ? -120.09 -82.96 104 18 ARG A 12 ? ? -71.84 -75.09 105 18 THR A 15 ? ? -89.67 -78.62 106 18 ARG A 17 ? ? -68.10 -80.84 107 18 ARG A 20 ? ? -50.17 -74.93 108 19 TYR A 2 ? ? -105.31 -70.13 109 19 LYS A 13 ? ? -95.89 -77.54 110 20 THR A 6 ? ? -51.21 -73.91 111 20 ILE A 7 ? ? -120.24 -88.48 112 20 ARG A 12 ? ? -97.34 -74.94 113 20 LYS A 13 ? ? -120.41 -75.27 114 20 HIS A 16 ? ? -46.85 100.16 # _pdbx_nmr_ensemble.entry_id 6J12 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6J12 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM KYE28-PEG48, 55.5 M Water, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1H _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '1mM of KYE28-PEG48 in 10% deuterated water, pH 4.52 at 298K' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 KYE28-PEG48 1 ? mM 'natural abundance' 1 Water 55.5 ? M 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 9.8 _pdbx_nmr_exptl_sample_conditions.pH 4.52 _pdbx_nmr_exptl_sample_conditions.ionic_strength 1 _pdbx_nmr_exptl_sample_conditions.details '1mM of KYE28-PEG48 in 10% deuterated water, pH 4.52 at 298K' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.01 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1H _pdbx_nmr_exptl_sample_conditions.pH_err 0.01 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 6J12 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 6 'data analysis' TopSpin 3.5 'Bruker Biospin' 7 processing TopSpin 3.4 'Bruker Biospin' 2 'chemical shift assignment' Sparky ? Goddard 5 'structure calculation' CYANA v2.1 'Guntert, Mumenthaler and Wuthrich' 3 refinement CYANA v2.1 'Guntert, Mumenthaler and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 GLU N N N N 45 GLU CA C N S 46 GLU C C N N 47 GLU O O N N 48 GLU CB C N N 49 GLU CG C N N 50 GLU CD C N N 51 GLU OE1 O N N 52 GLU OE2 O N N 53 GLU OXT O N N 54 GLU H H N N 55 GLU H2 H N N 56 GLU HA H N N 57 GLU HB2 H N N 58 GLU HB3 H N N 59 GLU HG2 H N N 60 GLU HG3 H N N 61 GLU HE2 H N N 62 GLU HXT H N N 63 GLY N N N N 64 GLY CA C N N 65 GLY C C N N 66 GLY O O N N 67 GLY OXT O N N 68 GLY H H N N 69 GLY H2 H N N 70 GLY HA2 H N N 71 GLY HA3 H N N 72 GLY HXT H N N 73 HIS N N N N 74 HIS CA C N S 75 HIS C C N N 76 HIS O O N N 77 HIS CB C N N 78 HIS CG C Y N 79 HIS ND1 N Y N 80 HIS CD2 C Y N 81 HIS CE1 C Y N 82 HIS NE2 N Y N 83 HIS OXT O N N 84 HIS H H N N 85 HIS H2 H N N 86 HIS HA H N N 87 HIS HB2 H N N 88 HIS HB3 H N N 89 HIS HD1 H N N 90 HIS HD2 H N N 91 HIS HE1 H N N 92 HIS HE2 H N N 93 HIS HXT H N N 94 ILE N N N N 95 ILE CA C N S 96 ILE C C N N 97 ILE O O N N 98 ILE CB C N S 99 ILE CG1 C N N 100 ILE CG2 C N N 101 ILE CD1 C N N 102 ILE OXT O N N 103 ILE H H N N 104 ILE H2 H N N 105 ILE HA H N N 106 ILE HB H N N 107 ILE HG12 H N N 108 ILE HG13 H N N 109 ILE HG21 H N N 110 ILE HG22 H N N 111 ILE HG23 H N N 112 ILE HD11 H N N 113 ILE HD12 H N N 114 ILE HD13 H N N 115 ILE HXT H N N 116 LEU N N N N 117 LEU CA C N S 118 LEU C C N N 119 LEU O O N N 120 LEU CB C N N 121 LEU CG C N N 122 LEU CD1 C N N 123 LEU CD2 C N N 124 LEU OXT O N N 125 LEU H H N N 126 LEU H2 H N N 127 LEU HA H N N 128 LEU HB2 H N N 129 LEU HB3 H N N 130 LEU HG H N N 131 LEU HD11 H N N 132 LEU HD12 H N N 133 LEU HD13 H N N 134 LEU HD21 H N N 135 LEU HD22 H N N 136 LEU HD23 H N N 137 LEU HXT H N N 138 LYS N N N N 139 LYS CA C N S 140 LYS C C N N 141 LYS O O N N 142 LYS CB C N N 143 LYS CG C N N 144 LYS CD C N N 145 LYS CE C N N 146 LYS NZ N N N 147 LYS OXT O N N 148 LYS H H N N 149 LYS H2 H N N 150 LYS HA H N N 151 LYS HB2 H N N 152 LYS HB3 H N N 153 LYS HG2 H N N 154 LYS HG3 H N N 155 LYS HD2 H N N 156 LYS HD3 H N N 157 LYS HE2 H N N 158 LYS HE3 H N N 159 LYS HZ1 H N N 160 LYS HZ2 H N N 161 LYS HZ3 H N N 162 LYS HXT H N N 163 PHE N N N N 164 PHE CA C N S 165 PHE C C N N 166 PHE O O N N 167 PHE CB C N N 168 PHE CG C Y N 169 PHE CD1 C Y N 170 PHE CD2 C Y N 171 PHE CE1 C Y N 172 PHE CE2 C Y N 173 PHE CZ C Y N 174 PHE OXT O N N 175 PHE H H N N 176 PHE H2 H N N 177 PHE HA H N N 178 PHE HB2 H N N 179 PHE HB3 H N N 180 PHE HD1 H N N 181 PHE HD2 H N N 182 PHE HE1 H N N 183 PHE HE2 H N N 184 PHE HZ H N N 185 PHE HXT H N N 186 THR N N N N 187 THR CA C N S 188 THR C C N N 189 THR O O N N 190 THR CB C N R 191 THR OG1 O N N 192 THR CG2 C N N 193 THR OXT O N N 194 THR H H N N 195 THR H2 H N N 196 THR HA H N N 197 THR HB H N N 198 THR HG1 H N N 199 THR HG21 H N N 200 THR HG22 H N N 201 THR HG23 H N N 202 THR HXT H N N 203 TYR N N N N 204 TYR CA C N S 205 TYR C C N N 206 TYR O O N N 207 TYR CB C N N 208 TYR CG C Y N 209 TYR CD1 C Y N 210 TYR CD2 C Y N 211 TYR CE1 C Y N 212 TYR CE2 C Y N 213 TYR CZ C Y N 214 TYR OH O N N 215 TYR OXT O N N 216 TYR H H N N 217 TYR H2 H N N 218 TYR HA H N N 219 TYR HB2 H N N 220 TYR HB3 H N N 221 TYR HD1 H N N 222 TYR HD2 H N N 223 TYR HE1 H N N 224 TYR HE2 H N N 225 TYR HH H N N 226 TYR HXT H N N 227 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 GLU N CA sing N N 43 GLU N H sing N N 44 GLU N H2 sing N N 45 GLU CA C sing N N 46 GLU CA CB sing N N 47 GLU CA HA sing N N 48 GLU C O doub N N 49 GLU C OXT sing N N 50 GLU CB CG sing N N 51 GLU CB HB2 sing N N 52 GLU CB HB3 sing N N 53 GLU CG CD sing N N 54 GLU CG HG2 sing N N 55 GLU CG HG3 sing N N 56 GLU CD OE1 doub N N 57 GLU CD OE2 sing N N 58 GLU OE2 HE2 sing N N 59 GLU OXT HXT sing N N 60 GLY N CA sing N N 61 GLY N H sing N N 62 GLY N H2 sing N N 63 GLY CA C sing N N 64 GLY CA HA2 sing N N 65 GLY CA HA3 sing N N 66 GLY C O doub N N 67 GLY C OXT sing N N 68 GLY OXT HXT sing N N 69 HIS N CA sing N N 70 HIS N H sing N N 71 HIS N H2 sing N N 72 HIS CA C sing N N 73 HIS CA CB sing N N 74 HIS CA HA sing N N 75 HIS C O doub N N 76 HIS C OXT sing N N 77 HIS CB CG sing N N 78 HIS CB HB2 sing N N 79 HIS CB HB3 sing N N 80 HIS CG ND1 sing Y N 81 HIS CG CD2 doub Y N 82 HIS ND1 CE1 doub Y N 83 HIS ND1 HD1 sing N N 84 HIS CD2 NE2 sing Y N 85 HIS CD2 HD2 sing N N 86 HIS CE1 NE2 sing Y N 87 HIS CE1 HE1 sing N N 88 HIS NE2 HE2 sing N N 89 HIS OXT HXT sing N N 90 ILE N CA sing N N 91 ILE N H sing N N 92 ILE N H2 sing N N 93 ILE CA C sing N N 94 ILE CA CB sing N N 95 ILE CA HA sing N N 96 ILE C O doub N N 97 ILE C OXT sing N N 98 ILE CB CG1 sing N N 99 ILE CB CG2 sing N N 100 ILE CB HB sing N N 101 ILE CG1 CD1 sing N N 102 ILE CG1 HG12 sing N N 103 ILE CG1 HG13 sing N N 104 ILE CG2 HG21 sing N N 105 ILE CG2 HG22 sing N N 106 ILE CG2 HG23 sing N N 107 ILE CD1 HD11 sing N N 108 ILE CD1 HD12 sing N N 109 ILE CD1 HD13 sing N N 110 ILE OXT HXT sing N N 111 LEU N CA sing N N 112 LEU N H sing N N 113 LEU N H2 sing N N 114 LEU CA C sing N N 115 LEU CA CB sing N N 116 LEU CA HA sing N N 117 LEU C O doub N N 118 LEU C OXT sing N N 119 LEU CB CG sing N N 120 LEU CB HB2 sing N N 121 LEU CB HB3 sing N N 122 LEU CG CD1 sing N N 123 LEU CG CD2 sing N N 124 LEU CG HG sing N N 125 LEU CD1 HD11 sing N N 126 LEU CD1 HD12 sing N N 127 LEU CD1 HD13 sing N N 128 LEU CD2 HD21 sing N N 129 LEU CD2 HD22 sing N N 130 LEU CD2 HD23 sing N N 131 LEU OXT HXT sing N N 132 LYS N CA sing N N 133 LYS N H sing N N 134 LYS N H2 sing N N 135 LYS CA C sing N N 136 LYS CA CB sing N N 137 LYS CA HA sing N N 138 LYS C O doub N N 139 LYS C OXT sing N N 140 LYS CB CG sing N N 141 LYS CB HB2 sing N N 142 LYS CB HB3 sing N N 143 LYS CG CD sing N N 144 LYS CG HG2 sing N N 145 LYS CG HG3 sing N N 146 LYS CD CE sing N N 147 LYS CD HD2 sing N N 148 LYS CD HD3 sing N N 149 LYS CE NZ sing N N 150 LYS CE HE2 sing N N 151 LYS CE HE3 sing N N 152 LYS NZ HZ1 sing N N 153 LYS NZ HZ2 sing N N 154 LYS NZ HZ3 sing N N 155 LYS OXT HXT sing N N 156 PHE N CA sing N N 157 PHE N H sing N N 158 PHE N H2 sing N N 159 PHE CA C sing N N 160 PHE CA CB sing N N 161 PHE CA HA sing N N 162 PHE C O doub N N 163 PHE C OXT sing N N 164 PHE CB CG sing N N 165 PHE CB HB2 sing N N 166 PHE CB HB3 sing N N 167 PHE CG CD1 doub Y N 168 PHE CG CD2 sing Y N 169 PHE CD1 CE1 sing Y N 170 PHE CD1 HD1 sing N N 171 PHE CD2 CE2 doub Y N 172 PHE CD2 HD2 sing N N 173 PHE CE1 CZ doub Y N 174 PHE CE1 HE1 sing N N 175 PHE CE2 CZ sing Y N 176 PHE CE2 HE2 sing N N 177 PHE CZ HZ sing N N 178 PHE OXT HXT sing N N 179 THR N CA sing N N 180 THR N H sing N N 181 THR N H2 sing N N 182 THR CA C sing N N 183 THR CA CB sing N N 184 THR CA HA sing N N 185 THR C O doub N N 186 THR C OXT sing N N 187 THR CB OG1 sing N N 188 THR CB CG2 sing N N 189 THR CB HB sing N N 190 THR OG1 HG1 sing N N 191 THR CG2 HG21 sing N N 192 THR CG2 HG22 sing N N 193 THR CG2 HG23 sing N N 194 THR OXT HXT sing N N 195 TYR N CA sing N N 196 TYR N H sing N N 197 TYR N H2 sing N N 198 TYR CA C sing N N 199 TYR CA CB sing N N 200 TYR CA HA sing N N 201 TYR C O doub N N 202 TYR C OXT sing N N 203 TYR CB CG sing N N 204 TYR CB HB2 sing N N 205 TYR CB HB3 sing N N 206 TYR CG CD1 doub Y N 207 TYR CG CD2 sing Y N 208 TYR CD1 CE1 sing Y N 209 TYR CD1 HD1 sing N N 210 TYR CD2 CE2 doub Y N 211 TYR CD2 HD2 sing N N 212 TYR CE1 CZ doub Y N 213 TYR CE1 HE1 sing N N 214 TYR CE2 CZ sing Y N 215 TYR CE2 HE2 sing N N 216 TYR CZ OH sing N N 217 TYR OH HH sing N N 218 TYR OXT HXT sing N N 219 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'Bruker Avance III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details '700 MHz FT-NMR Spectrometer equipped with cryo-probe,' # _atom_sites.entry_id 6J12 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_