data_6J9A # _entry.id 6J9A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.309 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6J9A WWPDB D_1300010666 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6J9A _pdbx_database_status.recvd_initial_deposition_date 2019-01-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hu, H.' 1 0000-0002-3086-3072 'Du, J.' 2 0000-0002-1337-0786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Plants _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2055-0278 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 424 _citation.page_last 435 _citation.title 'Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41477-019-0402-3 _citation.pdbx_database_id_PubMed 30962525 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tao, Z.' 1 ? primary 'Hu, H.' 2 ? primary 'Luo, X.' 3 ? primary 'Jia, B.' 4 ? primary 'Du, J.' 5 0000-0002-1337-0786 primary 'He, Y.' 6 0000-0003-3304-4555 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6J9A _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.157 _cell.length_a_esd ? _cell.length_b 59.157 _cell.length_b_esd ? _cell.length_c 97.393 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B3 domain-containing transcription repressor VAL1' 14832.151 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)-3') ; 4615.006 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)-3') ; 4562.000 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2,Protein VP1/ABI3-LIKE 1' 2 'FLC CME DNA' 3 'FLC CME DNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYWPN NNSR(MSE)YVLEGVTPCIQS(MSE)(MSE)LQAGDTVTFSRVDPGGKLI(MSE)GSRKAANAGD(MSE)QG ; ;SPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYWPN NNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQG ; A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DC)(DT)(DG)(DC)(DA)(DT)(DG)(DG)(DA)(DT)(DT)(DG)' ATTCTGCATGGATTG B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DC)(DC)(DA)(DT)(DG)(DC)(DA)(DG)(DA)(DA)(DT)(DC)' AATCCATGCAGAATC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 LYS n 1 4 TYR n 1 5 THR n 1 6 ASP n 1 7 LYS n 1 8 GLU n 1 9 VAL n 1 10 GLN n 1 11 GLN n 1 12 ILE n 1 13 SER n 1 14 GLY n 1 15 ASN n 1 16 LEU n 1 17 ASN n 1 18 LEU n 1 19 ASN n 1 20 ILE n 1 21 VAL n 1 22 PRO n 1 23 LEU n 1 24 PHE n 1 25 GLU n 1 26 LYS n 1 27 THR n 1 28 LEU n 1 29 SER n 1 30 ALA n 1 31 SER n 1 32 ASP n 1 33 ALA n 1 34 GLY n 1 35 ARG n 1 36 ILE n 1 37 GLY n 1 38 ARG n 1 39 LEU n 1 40 VAL n 1 41 LEU n 1 42 PRO n 1 43 LYS n 1 44 ALA n 1 45 CYS n 1 46 ALA n 1 47 GLU n 1 48 ALA n 1 49 TYR n 1 50 PHE n 1 51 PRO n 1 52 PRO n 1 53 ILE n 1 54 SER n 1 55 GLN n 1 56 SER n 1 57 GLU n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 LEU n 1 62 LYS n 1 63 ILE n 1 64 GLN n 1 65 ASP n 1 66 VAL n 1 67 ARG n 1 68 GLY n 1 69 ARG n 1 70 GLU n 1 71 TRP n 1 72 THR n 1 73 PHE n 1 74 GLN n 1 75 PHE n 1 76 ARG n 1 77 TYR n 1 78 TRP n 1 79 PRO n 1 80 ASN n 1 81 ASN n 1 82 ASN n 1 83 SER n 1 84 ARG n 1 85 MSE n 1 86 TYR n 1 87 VAL n 1 88 LEU n 1 89 GLU n 1 90 GLY n 1 91 VAL n 1 92 THR n 1 93 PRO n 1 94 CYS n 1 95 ILE n 1 96 GLN n 1 97 SER n 1 98 MSE n 1 99 MSE n 1 100 LEU n 1 101 GLN n 1 102 ALA n 1 103 GLY n 1 104 ASP n 1 105 THR n 1 106 VAL n 1 107 THR n 1 108 PHE n 1 109 SER n 1 110 ARG n 1 111 VAL n 1 112 ASP n 1 113 PRO n 1 114 GLY n 1 115 GLY n 1 116 LYS n 1 117 LEU n 1 118 ILE n 1 119 MSE n 1 120 GLY n 1 121 SER n 1 122 ARG n 1 123 LYS n 1 124 ALA n 1 125 ALA n 1 126 ASN n 1 127 ALA n 1 128 GLY n 1 129 ASP n 1 130 MSE n 1 131 GLN n 1 132 GLY n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DT n 2 14 DT n 2 15 DG n 3 1 DA n 3 2 DA n 3 3 DT n 3 4 DC n 3 5 DC n 3 6 DA n 3 7 DT n 3 8 DG n 3 9 DC n 3 10 DA n 3 11 DG n 3 12 DA n 3 13 DA n 3 14 DT n 3 15 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 132 _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VAL1, HSI2, At2g30470, T6B20.17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant RIL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSumo _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 15 'synthetic construct' ? 32630 ? 3 1 sample 1 15 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP VAL1_ARATH Q8W4L5 ? 1 ;PKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYWPNN NSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQG ; 273 2 PDB 6J9A 6J9A ? 2 ? 1 3 PDB 6J9A 6J9A ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6J9A A 2 ? 132 ? Q8W4L5 273 ? 403 ? 273 403 2 2 6J9A B 1 ? 15 ? 6J9A 1 ? 15 ? 1 15 3 3 6J9A C 1 ? 15 ? 6J9A 1 ? 15 ? 1 15 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6J9A _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8W4L5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 272 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J9A _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.56 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M LiCl, 20% PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-07-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6J9A _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5228 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.6 _reflns.pdbx_Rmerge_I_obs 0.119 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.072 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.985 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6J9A _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.915 _refine.ls_d_res_low 31.731 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5228 _refine.ls_number_reflns_R_free 245 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 70.96 _refine.ls_percent_reflns_R_free 4.69 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2063 _refine.ls_R_factor_R_free 0.2426 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2044 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.01 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.50 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 826 _refine_hist.pdbx_number_atoms_nucleic_acid 607 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1433 _refine_hist.d_res_high 2.915 _refine_hist.d_res_low 31.731 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1525 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.145 ? 2190 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 31.373 ? 610 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.079 ? 242 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 ? 178 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9152 3.6720 . . 62 1478 42.00 . . . 0.3177 . 0.2403 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6720 31.7327 . . 183 3505 100.00 . . . 0.2190 . 0.1907 . . . . . . . . . . # _struct.entry_id 6J9A _struct.title 'Crystal structure of Arabidopsis thaliana VAL1 in complex with FLC DNA fragment' _struct.pdbx_descriptor 'B3 domain-containing transcription repressor VAL1, DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J9A _struct_keywords.text 'flowering time regulation, DNA-binding, GENE REGULATION, TRANSCRIPTION, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 29 ? GLY A 34 ? SER A 300 GLY A 305 1 ? 6 HELX_P HELX_P2 AA2 PRO A 42 ? TYR A 49 ? PRO A 313 TYR A 320 1 ? 8 HELX_P HELX_P3 AA3 VAL A 91 ? MSE A 98 ? VAL A 362 MSE A 369 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ARG 84 C ? ? ? 1_555 A MSE 85 N ? ? A ARG 355 A MSE 356 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 85 C ? ? ? 1_555 A TYR 86 N ? ? A MSE 356 A TYR 357 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale both ? A SER 97 C ? ? ? 1_555 A MSE 98 N ? ? A SER 368 A MSE 369 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale both ? A MSE 98 C ? ? ? 1_555 A MSE 99 N ? ? A MSE 369 A MSE 370 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale both ? A MSE 99 C ? ? ? 1_555 A LEU 100 N ? ? A MSE 370 A LEU 371 1_555 ? ? ? ? ? ? ? 1.336 ? covale6 covale both ? A ILE 118 C ? ? ? 1_555 A MSE 119 N ? ? A ILE 389 A MSE 390 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? A MSE 119 C ? ? ? 1_555 A GLY 120 N ? ? A MSE 390 A GLY 391 1_555 ? ? ? ? ? ? ? 1.331 ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 14 N3 ? ? B DA 1 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 14 O4 ? ? B DA 1 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 13 N1 ? ? B DT 2 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 13 N6 ? ? B DT 2 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 3 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 3 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 6 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 6 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 6 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 7 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 7 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 7 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 10 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 10 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 10 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 3 N3 ? ? B DA 12 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 3 O4 ? ? B DA 12 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B DT 14 N3 ? ? ? 1_555 C DA 1 N1 ? ? B DT 14 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DT 14 O4 ? ? ? 1_555 C DA 1 N6 ? ? B DT 14 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PRO A 22 ? THR A 27 ? PRO A 293 THR A 298 AA1 2 THR A 105 ? ARG A 110 ? THR A 376 ARG A 381 AA1 3 LEU A 117 ? ARG A 122 ? LEU A 388 ARG A 393 AA1 4 ILE A 59 ? GLN A 64 ? ILE A 330 GLN A 335 AA1 5 GLU A 70 ? ASN A 80 ? GLU A 341 ASN A 351 AA1 6 SER A 83 ? GLU A 89 ? SER A 354 GLU A 360 AA1 7 ARG A 38 ? LEU A 41 ? ARG A 309 LEU A 312 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 26 ? N LYS A 297 O VAL A 106 ? O VAL A 377 AA1 2 3 N THR A 107 ? N THR A 378 O GLY A 120 ? O GLY A 391 AA1 3 4 O MSE A 119 ? O MSE A 390 N GLN A 64 ? N GLN A 335 AA1 4 5 N LEU A 61 ? N LEU A 332 O PHE A 73 ? O PHE A 344 AA1 5 6 N ARG A 76 ? N ARG A 347 O VAL A 87 ? O VAL A 358 AA1 6 7 O LEU A 88 ? O LEU A 359 N LEU A 39 ? N LEU A 310 # _atom_sites.entry_id 6J9A _atom_sites.fract_transf_matrix[1][1] 0.016904 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016904 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010268 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 272 ? ? ? A . n A 1 2 PRO 2 273 ? ? ? A . n A 1 3 LYS 3 274 ? ? ? A . n A 1 4 TYR 4 275 ? ? ? A . n A 1 5 THR 5 276 ? ? ? A . n A 1 6 ASP 6 277 ? ? ? A . n A 1 7 LYS 7 278 ? ? ? A . n A 1 8 GLU 8 279 ? ? ? A . n A 1 9 VAL 9 280 ? ? ? A . n A 1 10 GLN 10 281 ? ? ? A . n A 1 11 GLN 11 282 ? ? ? A . n A 1 12 ILE 12 283 ? ? ? A . n A 1 13 SER 13 284 ? ? ? A . n A 1 14 GLY 14 285 ? ? ? A . n A 1 15 ASN 15 286 ? ? ? A . n A 1 16 LEU 16 287 ? ? ? A . n A 1 17 ASN 17 288 ? ? ? A . n A 1 18 LEU 18 289 ? ? ? A . n A 1 19 ASN 19 290 ? ? ? A . n A 1 20 ILE 20 291 291 ILE ILE A . n A 1 21 VAL 21 292 292 VAL VAL A . n A 1 22 PRO 22 293 293 PRO PRO A . n A 1 23 LEU 23 294 294 LEU LEU A . n A 1 24 PHE 24 295 295 PHE PHE A . n A 1 25 GLU 25 296 296 GLU GLU A . n A 1 26 LYS 26 297 297 LYS LYS A . n A 1 27 THR 27 298 298 THR THR A . n A 1 28 LEU 28 299 299 LEU LEU A . n A 1 29 SER 29 300 300 SER SER A . n A 1 30 ALA 30 301 301 ALA ALA A . n A 1 31 SER 31 302 302 SER SER A . n A 1 32 ASP 32 303 303 ASP ASP A . n A 1 33 ALA 33 304 304 ALA ALA A . n A 1 34 GLY 34 305 305 GLY GLY A . n A 1 35 ARG 35 306 306 ARG ARG A . n A 1 36 ILE 36 307 307 ILE ILE A . n A 1 37 GLY 37 308 308 GLY GLY A . n A 1 38 ARG 38 309 309 ARG ARG A . n A 1 39 LEU 39 310 310 LEU LEU A . n A 1 40 VAL 40 311 311 VAL VAL A . n A 1 41 LEU 41 312 312 LEU LEU A . n A 1 42 PRO 42 313 313 PRO PRO A . n A 1 43 LYS 43 314 314 LYS LYS A . n A 1 44 ALA 44 315 315 ALA ALA A . n A 1 45 CYS 45 316 316 CYS CYS A . n A 1 46 ALA 46 317 317 ALA ALA A . n A 1 47 GLU 47 318 318 GLU GLU A . n A 1 48 ALA 48 319 319 ALA ALA A . n A 1 49 TYR 49 320 320 TYR TYR A . n A 1 50 PHE 50 321 321 PHE PHE A . n A 1 51 PRO 51 322 322 PRO PRO A . n A 1 52 PRO 52 323 323 PRO PRO A . n A 1 53 ILE 53 324 324 ILE ILE A . n A 1 54 SER 54 325 325 SER SER A . n A 1 55 GLN 55 326 326 GLN GLN A . n A 1 56 SER 56 327 327 SER SER A . n A 1 57 GLU 57 328 328 GLU GLU A . n A 1 58 GLY 58 329 329 GLY GLY A . n A 1 59 ILE 59 330 330 ILE ILE A . n A 1 60 PRO 60 331 331 PRO PRO A . n A 1 61 LEU 61 332 332 LEU LEU A . n A 1 62 LYS 62 333 333 LYS LYS A . n A 1 63 ILE 63 334 334 ILE ILE A . n A 1 64 GLN 64 335 335 GLN GLN A . n A 1 65 ASP 65 336 336 ASP ASP A . n A 1 66 VAL 66 337 337 VAL VAL A . n A 1 67 ARG 67 338 338 ARG ARG A . n A 1 68 GLY 68 339 339 GLY GLY A . n A 1 69 ARG 69 340 340 ARG ARG A . n A 1 70 GLU 70 341 341 GLU GLU A . n A 1 71 TRP 71 342 342 TRP TRP A . n A 1 72 THR 72 343 343 THR THR A . n A 1 73 PHE 73 344 344 PHE PHE A . n A 1 74 GLN 74 345 345 GLN GLN A . n A 1 75 PHE 75 346 346 PHE PHE A . n A 1 76 ARG 76 347 347 ARG ARG A . n A 1 77 TYR 77 348 348 TYR TYR A . n A 1 78 TRP 78 349 349 TRP TRP A . n A 1 79 PRO 79 350 350 PRO PRO A . n A 1 80 ASN 80 351 351 ASN ASN A . n A 1 81 ASN 81 352 352 ASN ASN A . n A 1 82 ASN 82 353 353 ASN ASN A . n A 1 83 SER 83 354 354 SER SER A . n A 1 84 ARG 84 355 355 ARG ARG A . n A 1 85 MSE 85 356 356 MSE MSE A . n A 1 86 TYR 86 357 357 TYR TYR A . n A 1 87 VAL 87 358 358 VAL VAL A . n A 1 88 LEU 88 359 359 LEU LEU A . n A 1 89 GLU 89 360 360 GLU GLU A . n A 1 90 GLY 90 361 361 GLY GLY A . n A 1 91 VAL 91 362 362 VAL VAL A . n A 1 92 THR 92 363 363 THR THR A . n A 1 93 PRO 93 364 364 PRO PRO A . n A 1 94 CYS 94 365 365 CYS CYS A . n A 1 95 ILE 95 366 366 ILE ILE A . n A 1 96 GLN 96 367 367 GLN GLN A . n A 1 97 SER 97 368 368 SER SER A . n A 1 98 MSE 98 369 369 MSE MSE A . n A 1 99 MSE 99 370 370 MSE MSE A . n A 1 100 LEU 100 371 371 LEU LEU A . n A 1 101 GLN 101 372 372 GLN GLN A . n A 1 102 ALA 102 373 373 ALA ALA A . n A 1 103 GLY 103 374 374 GLY GLY A . n A 1 104 ASP 104 375 375 ASP ASP A . n A 1 105 THR 105 376 376 THR THR A . n A 1 106 VAL 106 377 377 VAL VAL A . n A 1 107 THR 107 378 378 THR THR A . n A 1 108 PHE 108 379 379 PHE PHE A . n A 1 109 SER 109 380 380 SER SER A . n A 1 110 ARG 110 381 381 ARG ARG A . n A 1 111 VAL 111 382 382 VAL VAL A . n A 1 112 ASP 112 383 383 ASP ASP A . n A 1 113 PRO 113 384 384 PRO PRO A . n A 1 114 GLY 114 385 385 GLY GLY A . n A 1 115 GLY 115 386 386 GLY GLY A . n A 1 116 LYS 116 387 387 LYS LYS A . n A 1 117 LEU 117 388 388 LEU LEU A . n A 1 118 ILE 118 389 389 ILE ILE A . n A 1 119 MSE 119 390 390 MSE MSE A . n A 1 120 GLY 120 391 391 GLY GLY A . n A 1 121 SER 121 392 392 SER SER A . n A 1 122 ARG 122 393 393 ARG ARG A . n A 1 123 LYS 123 394 394 LYS LYS A . n A 1 124 ALA 124 395 395 ALA ALA A . n A 1 125 ALA 125 396 396 ALA ALA A . n A 1 126 ASN 126 397 ? ? ? A . n A 1 127 ALA 127 398 ? ? ? A . n A 1 128 GLY 128 399 ? ? ? A . n A 1 129 ASP 129 400 ? ? ? A . n A 1 130 MSE 130 401 ? ? ? A . n A 1 131 GLN 131 402 ? ? ? A . n A 1 132 GLY 132 403 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DC 4 4 4 DC DC B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DT 13 13 13 DT DT B . n B 2 14 DT 14 14 14 DT DT B . n B 2 15 DG 15 15 15 DG DG B . n C 3 1 DA 1 1 1 DA DA C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 DT 3 3 3 DT DT C . n C 3 4 DC 4 4 4 DC DC C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DA 6 6 6 DA DA C . n C 3 7 DT 7 7 7 DT DT C . n C 3 8 DG 8 8 8 DG DG C . n C 3 9 DC 9 9 9 DC DC C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 DG 11 11 11 DG DG C . n C 3 12 DA 12 12 12 DA DA C . n C 3 13 DA 13 13 13 DA DA C . n C 3 14 DT 14 14 14 DT DT C . n C 3 15 DC 15 15 15 DC DC C . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 85 A MSE 356 ? MET 'modified residue' 2 A MSE 98 A MSE 369 ? MET 'modified residue' 3 A MSE 99 A MSE 370 ? MET 'modified residue' 4 A MSE 119 A MSE 390 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2870 ? 1 MORE -12 ? 1 'SSA (A^2)' 10350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.0083 60.8837 46.8669 0.0324 0.3589 0.1422 0.0355 -0.0003 0.0404 0.5383 0.7749 1.1452 -0.5442 -0.0024 -0.4701 0.0035 -0.0948 0.1125 0.0588 0.0952 0.0490 -0.0479 -0.1784 0.1718 'X-RAY DIFFRACTION' 2 ? refined 13.3151 47.2457 47.2007 0.1571 0.1256 0.3092 -0.0093 0.1332 -0.0510 2.5980 0.1660 3.4775 -0.3497 -0.9506 -0.4819 -0.0605 0.0456 -0.3179 -0.1070 0.1276 -0.0588 0.2361 0.3151 0.2631 'X-RAY DIFFRACTION' 3 ? refined 2.1261 59.0352 40.8946 0.1064 0.2537 0.3522 -0.0716 -0.0232 0.0431 1.9165 0.4064 0.7063 0.8821 -0.0220 -0.0290 -0.0117 0.0315 0.2858 -0.0417 0.1173 0.2327 -0.0702 -0.1271 0.0369 'X-RAY DIFFRACTION' 4 ? refined 14.1778 52.6491 41.1801 0.0157 0.2451 0.2248 0.0130 0.0821 -0.0381 0.5837 0.7283 0.4465 -0.3831 0.4921 -0.2007 -0.0166 -0.0878 -0.0477 -0.0578 -0.0198 -0.0058 0.0464 0.0694 -0.1772 'X-RAY DIFFRACTION' 5 ? refined 16.1307 57.6626 41.7954 0.2248 0.2732 0.1843 -0.0479 -0.0522 0.0033 0.9539 1.4276 1.4499 0.6883 -0.9795 -0.0642 -0.1318 -0.2062 0.0410 0.1608 0.2174 -0.2512 0.1327 0.4242 -0.0833 'X-RAY DIFFRACTION' 6 ? refined 9.9658 67.4669 45.2142 0.1080 0.1660 0.2297 0.0336 -0.0736 0.0006 3.5066 4.5443 2.5218 1.0356 -0.2440 -0.0848 0.0243 -0.1501 0.2408 -0.0922 0.4072 0.0198 -0.0863 -0.2820 -0.2576 'X-RAY DIFFRACTION' 7 ? refined -3.1303 54.1096 51.5336 0.7636 0.7867 0.9030 0.1727 -0.0374 0.2544 0.2413 0.3798 0.1660 0.3027 0.2002 0.2512 0.0357 -0.8688 -0.1784 0.9410 -0.0628 0.3871 0.1971 -0.3711 0.0228 'X-RAY DIFFRACTION' 8 ? refined 7.5456 68.0979 46.7448 0.1871 0.2790 0.3060 0.1449 0.0164 0.0320 3.3981 4.1991 1.5106 2.4495 -0.2981 -0.6147 -0.1904 0.0020 0.0638 -0.1996 0.1513 -0.4501 -0.0833 -0.0893 0.0013 'X-RAY DIFFRACTION' 9 ? refined 28.5487 58.1028 42.0117 0.2017 0.6147 0.2244 -0.0527 0.0376 -0.0461 0.2002 1.5193 2.1210 -0.1486 0.6187 0.0923 0.0799 0.2096 -0.1695 -0.3876 0.1433 -0.3614 0.1258 0.3322 -0.0342 'X-RAY DIFFRACTION' 10 ? refined 28.7167 56.1285 38.7136 0.1740 0.6486 0.2281 -0.1030 -0.1059 -0.0616 0.9476 0.9612 1.7796 0.2846 0.5858 0.0395 0.0833 0.2493 -0.2860 -0.1355 0.3320 -0.2191 0.2261 0.4814 -0.2956 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 291 through 319 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 320 through 329 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 330 through 340 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 341 through 351 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 352 through 369 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 370 through 381 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 382 through 387 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 388 through 396 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 15 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ASP 383 ? ? N A PRO 384 ? ? CD A PRO 384 ? ? 111.79 128.40 -16.61 2.10 Y 2 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 110.19 108.30 1.89 0.30 N 3 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 110.60 108.30 2.30 0.30 N 4 1 "O4'" C DT 3 ? ? "C1'" C DT 3 ? ? N1 C DT 3 ? ? 110.67 108.30 2.37 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 351 ? ? -160.05 92.46 2 1 ASN A 353 ? ? 71.05 -2.43 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DA 1 ? "O5'" ? B DA 1 "O5'" 2 1 Y 1 C DA 1 ? "O5'" ? C DA 1 "O5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 272 ? A SER 1 2 1 Y 1 A PRO 273 ? A PRO 2 3 1 Y 1 A LYS 274 ? A LYS 3 4 1 Y 1 A TYR 275 ? A TYR 4 5 1 Y 1 A THR 276 ? A THR 5 6 1 Y 1 A ASP 277 ? A ASP 6 7 1 Y 1 A LYS 278 ? A LYS 7 8 1 Y 1 A GLU 279 ? A GLU 8 9 1 Y 1 A VAL 280 ? A VAL 9 10 1 Y 1 A GLN 281 ? A GLN 10 11 1 Y 1 A GLN 282 ? A GLN 11 12 1 Y 1 A ILE 283 ? A ILE 12 13 1 Y 1 A SER 284 ? A SER 13 14 1 Y 1 A GLY 285 ? A GLY 14 15 1 Y 1 A ASN 286 ? A ASN 15 16 1 Y 1 A LEU 287 ? A LEU 16 17 1 Y 1 A ASN 288 ? A ASN 17 18 1 Y 1 A LEU 289 ? A LEU 18 19 1 Y 1 A ASN 290 ? A ASN 19 20 1 Y 1 A ASN 397 ? A ASN 126 21 1 Y 1 A ALA 398 ? A ALA 127 22 1 Y 1 A GLY 399 ? A GLY 128 23 1 Y 1 A ASP 400 ? A ASP 129 24 1 Y 1 A MSE 401 ? A MSE 130 25 1 Y 1 A GLN 402 ? A GLN 131 26 1 Y 1 A GLY 403 ? A GLY 132 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6J9A 'double helix' 6J9A 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 14 1_555 0.144 -0.222 -0.367 5.148 -13.397 10.735 1 B_DA1:DT14_C B 1 ? C 14 ? 20 1 1 B DT 2 1_555 C DA 13 1_555 0.009 -0.185 -0.145 1.618 -11.527 7.389 2 B_DT2:DA13_C B 2 ? C 13 ? 20 1 1 B DT 3 1_555 C DA 12 1_555 -0.095 -0.089 0.279 -2.596 -9.480 -1.453 3 B_DT3:DA12_C B 3 ? C 12 ? 20 1 1 B DC 4 1_555 C DG 11 1_555 0.162 -0.110 0.174 -5.249 -4.428 0.803 4 B_DC4:DG11_C B 4 ? C 11 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 0.039 -0.217 0.183 -1.560 -0.629 4.513 5 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.154 -0.120 0.384 3.148 -3.414 -1.046 6 B_DG6:DC9_C B 6 ? C 9 ? 19 1 1 B DC 7 1_555 C DG 8 1_555 0.112 -0.167 0.706 -1.014 -6.061 -2.286 7 B_DC7:DG8_C B 7 ? C 8 ? 19 1 1 B DA 8 1_555 C DT 7 1_555 -0.014 -0.148 0.054 -0.370 -3.235 7.089 8 B_DA8:DT7_C B 8 ? C 7 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.259 -0.135 -0.023 6.825 -6.146 -1.525 9 B_DT9:DA6_C B 9 ? C 6 ? 20 1 1 B DG 10 1_555 C DC 5 1_555 -0.208 -0.079 -0.164 1.681 -8.285 5.007 10 B_DG10:DC5_C B 10 ? C 5 ? 19 1 1 B DG 11 1_555 C DC 4 1_555 0.304 -0.316 0.255 16.936 -8.791 -8.992 11 B_DG11:DC4_C B 11 ? C 4 ? 19 1 1 B DA 12 1_555 C DT 3 1_555 0.088 -0.176 -0.652 -5.215 -9.318 4.197 12 B_DA12:DT3_C B 12 ? C 3 ? 20 1 1 B DT 13 1_555 C DA 2 1_555 -0.056 -0.239 -0.591 2.493 -7.609 5.734 13 B_DT13:DA2_C B 13 ? C 2 ? 20 1 1 B DT 14 1_555 C DA 1 1_555 -0.105 -0.198 -0.180 3.783 -7.223 11.633 14 B_DT14:DA1_C B 14 ? C 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 14 1_555 B DT 2 1_555 C DA 13 1_555 -0.263 -0.405 3.326 -2.369 -1.188 31.818 -0.516 0.039 3.348 -2.163 4.311 31.925 1 BB_DA1DT2:DA13DT14_CC B 1 ? C 14 ? B 2 ? C 13 ? 1 B DT 2 1_555 C DA 13 1_555 B DT 3 1_555 C DA 12 1_555 -0.344 -0.334 3.369 -2.017 -1.954 35.563 -0.252 0.258 3.396 -3.194 3.296 35.670 2 BB_DT2DT3:DA12DA13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DT 3 1_555 C DA 12 1_555 B DC 4 1_555 C DG 11 1_555 0.232 -0.782 3.122 1.653 1.369 41.343 -1.246 -0.160 3.103 1.937 -2.340 41.397 3 BB_DT3DC4:DG11DA12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DC 4 1_555 C DG 11 1_555 B DT 5 1_555 C DA 10 1_555 0.612 -0.502 3.147 4.898 4.568 31.189 -1.717 -0.254 3.101 8.375 -8.981 31.883 4 BB_DC4DT5:DA10DG11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 0.345 0.991 3.214 0.967 3.077 33.519 1.210 -0.439 3.298 5.319 -1.673 33.669 5 BB_DT5DG6:DC9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DG 6 1_555 C DC 9 1_555 B DC 7 1_555 C DG 8 1_555 0.664 -1.065 3.477 -1.121 0.111 22.342 -2.789 -2.153 3.434 0.287 2.890 22.370 6 BB_DG6DC7:DG8DC9_CC B 6 ? C 9 ? B 7 ? C 8 ? 1 B DC 7 1_555 C DG 8 1_555 B DA 8 1_555 C DT 7 1_555 0.399 0.132 3.253 9.574 -0.362 46.272 0.194 0.289 3.268 -0.455 -12.032 47.200 7 BB_DC7DA8:DT7DG8_CC B 7 ? C 8 ? B 8 ? C 7 ? 1 B DA 8 1_555 C DT 7 1_555 B DT 9 1_555 C DA 6 1_555 -1.064 -0.179 3.235 0.036 0.965 27.593 -0.607 2.238 3.225 2.023 -0.075 27.610 8 BB_DA8DT9:DA6DT7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 B DT 9 1_555 C DA 6 1_555 B DG 10 1_555 C DC 5 1_555 1.210 1.779 3.421 6.219 5.596 37.723 1.921 -0.974 3.782 8.527 -9.476 38.607 9 BB_DT9DG10:DC5DA6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DG 10 1_555 C DC 5 1_555 B DG 11 1_555 C DC 4 1_555 -1.022 1.719 3.304 -8.812 -2.759 45.122 2.443 0.530 3.332 -3.552 11.343 46.009 10 BB_DG10DG11:DC4DC5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DG 11 1_555 C DC 4 1_555 B DA 12 1_555 C DT 3 1_555 0.736 -0.395 3.685 12.633 -3.370 39.610 -0.139 0.526 3.759 -4.817 -18.055 41.630 11 BB_DG11DA12:DT3DC4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DA 12 1_555 C DT 3 1_555 B DT 13 1_555 C DA 2 1_555 0.492 0.082 3.041 1.478 -2.260 29.388 0.610 -0.673 3.047 -4.443 -2.905 29.509 12 BB_DA12DT13:DA2DT3_CC B 12 ? C 3 ? B 13 ? C 2 ? 1 B DT 13 1_555 C DA 2 1_555 B DT 14 1_555 C DA 1 1_555 0.768 0.361 3.276 -0.673 -0.694 35.771 0.688 -1.347 3.254 -1.129 1.095 35.784 13 BB_DT13DT14:DA1DA2_CC B 13 ? C 2 ? B 14 ? C 1 ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #