data_6JKL # _entry.id 6JKL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6JKL WWPDB D_1300011268 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JKL _pdbx_database_status.recvd_initial_deposition_date 2019-03-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, X.' 1 ? 'Zhu, Y.' 2 ? 'Ye, S.' 3 ? 'Zhang, R.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of a triple-helix region of human collagen type II.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, X.' 1 ? primary 'Zhu, Y.' 2 ? primary 'Ye, S.' 3 ? primary 'Zhang, R.' 4 ? primary 'Lu, L.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 114.39 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JKL _cell.details ? _cell.formula_units_Z ? _cell.length_a 60.541 _cell.length_a_esd ? _cell.length_b 17.424 _cell.length_b_esd ? _cell.length_c 51.637 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'A triple-helix region of human collagen type II' 2431.464 3 ? ? ? ? 2 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)P(HYP)GP(HYP)GP(HYP)GDDGPSGAEGP(HYP)GP(HYP)GP(HYP)G(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPPGPPGPPGDDGPSGAEGPPGPPGPPGX _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 HYP n 1 4 GLY n 1 5 PRO n 1 6 HYP n 1 7 GLY n 1 8 PRO n 1 9 HYP n 1 10 GLY n 1 11 ASP n 1 12 ASP n 1 13 GLY n 1 14 PRO n 1 15 SER n 1 16 GLY n 1 17 ALA n 1 18 GLU n 1 19 GLY n 1 20 PRO n 1 21 HYP n 1 22 GLY n 1 23 PRO n 1 24 HYP n 1 25 GLY n 1 26 PRO n 1 27 HYP n 1 28 GLY n 1 29 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 29 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JKL _struct_ref.pdbx_db_accession 6JKL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JKL A 1 ? 29 ? 6JKL 0 ? 28 ? 0 28 2 1 6JKL B 1 ? 29 ? 6JKL 0 ? 28 ? 0 28 3 1 6JKL C 1 ? 29 ? 6JKL 0 ? 28 ? 0 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JKL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.70 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 27.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NaCl, 0.1 M Imidazole:HCl pH 8.0, 30%(w/v) PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-02-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JKL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.148 _reflns.d_resolution_low 29.737 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2848 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.27 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.79 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.19 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JKL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.148 _refine.ls_d_res_low 29.737 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2848 _refine.ls_number_reflns_R_free 143 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.27 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1983 _refine.ls_R_factor_R_free 0.2421 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1957 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.92 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 599 _refine_hist.d_res_high 2.148 _refine_hist.d_res_low 29.737 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 561 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.189 ? 785 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 5.239 ? 362 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.085 ? 73 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 114 ? f_plane_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.148 _refine_ls_shell.d_res_low 2.19 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.number_reflns_R_work 2705 _refine_ls_shell.percent_reflns_obs 99.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2421 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1957 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6JKL _struct.title 'Structure of a triple-helix region of human collagen type II' _struct.pdbx_descriptor 'collagen type III peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JKL _struct_keywords.text 'collagen, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A PRO 2 C ? ? ? 1_555 A HYP 3 N ? ? A PRO 1 A HYP 2 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale both ? A HYP 3 C ? ? ? 1_555 A GLY 4 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A PRO 5 C ? ? ? 1_555 A HYP 6 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale both ? A HYP 6 C ? ? ? 1_555 A GLY 7 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale both ? A PRO 8 C ? ? ? 1_555 A HYP 9 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale both ? A HYP 9 C ? ? ? 1_555 A GLY 10 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? A PRO 20 C ? ? ? 1_555 A HYP 21 N ? ? A PRO 19 A HYP 20 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale both ? A HYP 21 C ? ? ? 1_555 A GLY 22 N ? ? A HYP 20 A GLY 21 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale both ? A PRO 23 C ? ? ? 1_555 A HYP 24 N ? ? A PRO 22 A HYP 23 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale both ? A HYP 24 C ? ? ? 1_555 A GLY 25 N ? ? A HYP 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale both ? A PRO 26 C ? ? ? 1_555 A HYP 27 N ? ? A PRO 25 A HYP 26 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale both ? A HYP 27 C ? ? ? 1_555 A GLY 28 N ? ? A HYP 26 A GLY 27 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale both ? A GLY 28 C ? ? ? 1_555 A NH2 29 N ? ? A GLY 27 A NH2 28 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale both ? B ACE 1 C ? ? ? 1_555 B PRO 2 N ? ? B ACE 0 B PRO 1 1_555 ? ? ? ? ? ? ? 1.341 ? covale15 covale both ? B PRO 2 C ? ? ? 1_555 B HYP 3 N ? ? B PRO 1 B HYP 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale16 covale both ? B HYP 3 C ? ? ? 1_555 B GLY 4 N ? ? B HYP 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale both ? B PRO 5 C ? ? ? 1_555 B HYP 6 N ? ? B PRO 4 B HYP 5 1_555 ? ? ? ? ? ? ? 1.327 ? covale18 covale both ? B HYP 6 C ? ? ? 1_555 B GLY 7 N ? ? B HYP 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.327 ? covale19 covale both ? B PRO 8 C ? ? ? 1_555 B HYP 9 N ? ? B PRO 7 B HYP 8 1_555 ? ? ? ? ? ? ? 1.327 ? covale20 covale both ? B HYP 9 C ? ? ? 1_555 B GLY 10 N ? ? B HYP 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.326 ? covale21 covale both ? B PRO 20 C ? ? ? 1_555 B HYP 21 N ? ? B PRO 19 B HYP 20 1_555 ? ? ? ? ? ? ? 1.329 ? covale22 covale both ? B HYP 21 C ? ? ? 1_555 B GLY 22 N ? ? B HYP 20 B GLY 21 1_555 ? ? ? ? ? ? ? 1.328 ? covale23 covale both ? B PRO 23 C ? ? ? 1_555 B HYP 24 N ? ? B PRO 22 B HYP 23 1_555 ? ? ? ? ? ? ? 1.327 ? covale24 covale both ? B HYP 24 C ? ? ? 1_555 B GLY 25 N ? ? B HYP 23 B GLY 24 1_555 ? ? ? ? ? ? ? 1.328 ? covale25 covale both ? B PRO 26 C ? ? ? 1_555 B HYP 27 N ? ? B PRO 25 B HYP 26 1_555 ? ? ? ? ? ? ? 1.327 ? covale26 covale both ? B HYP 27 C ? ? ? 1_555 B GLY 28 N ? ? B HYP 26 B GLY 27 1_555 ? ? ? ? ? ? ? 1.330 ? covale27 covale both ? C ACE 1 C ? ? ? 1_555 C PRO 2 N ? ? C ACE 0 C PRO 1 1_555 ? ? ? ? ? ? ? 1.342 ? covale28 covale both ? C PRO 2 C ? ? ? 1_555 C HYP 3 N ? ? C PRO 1 C HYP 2 1_555 ? ? ? ? ? ? ? 1.325 ? covale29 covale both ? C HYP 3 C ? ? ? 1_555 C GLY 4 N ? ? C HYP 2 C GLY 3 1_555 ? ? ? ? ? ? ? 1.327 ? covale30 covale both ? C PRO 5 C ? ? ? 1_555 C HYP 6 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.329 ? covale31 covale both ? C HYP 6 C ? ? ? 1_555 C GLY 7 N ? ? C HYP 5 C GLY 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale32 covale both ? C PRO 8 C ? ? ? 1_555 C HYP 9 N ? ? C PRO 7 C HYP 8 1_555 ? ? ? ? ? ? ? 1.330 ? covale33 covale both ? C HYP 9 C ? ? ? 1_555 C GLY 10 N ? ? C HYP 8 C GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? covale34 covale both ? C PRO 20 C ? ? ? 1_555 C HYP 21 N ? ? C PRO 19 C HYP 20 1_555 ? ? ? ? ? ? ? 1.329 ? covale35 covale both ? C HYP 21 C ? ? ? 1_555 C GLY 22 N ? ? C HYP 20 C GLY 21 1_555 ? ? ? ? ? ? ? 1.328 ? covale36 covale both ? C PRO 23 C ? ? ? 1_555 C HYP 24 N ? ? C PRO 22 C HYP 23 1_555 ? ? ? ? ? ? ? 1.328 ? covale37 covale both ? C HYP 24 C ? ? ? 1_555 C GLY 25 N ? ? C HYP 23 C GLY 24 1_555 ? ? ? ? ? ? ? 1.327 ? covale38 covale both ? C PRO 26 C ? ? ? 1_555 C HYP 27 N ? ? C PRO 25 C HYP 26 1_555 ? ? ? ? ? ? ? 1.324 ? covale39 covale both ? C HYP 27 C ? ? ? 1_555 C GLY 28 N ? ? C HYP 26 C GLY 27 1_555 ? ? ? ? ? ? ? 1.328 ? covale40 covale both ? C GLY 28 C ? ? ? 1_555 C NH2 29 N ? ? C GLY 27 C NH2 28 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6JKL _atom_sites.fract_transf_matrix[1][1] 0.016518 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007490 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.057392 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021264 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 ? ? ? A . n A 1 2 PRO 2 1 1 PRO PRO A . n A 1 3 HYP 3 2 2 HYP HYP A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 HYP 6 5 5 HYP HYP A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 HYP 9 8 8 HYP HYP A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 ASP 12 11 11 ASP ASP A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 HYP 21 20 20 HYP HYP A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 HYP 24 23 23 HYP HYP A . n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 HYP 27 26 26 HYP HYP A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 NH2 29 28 28 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 PRO 2 1 1 PRO PRO B . n B 1 3 HYP 3 2 2 HYP HYP B . n B 1 4 GLY 4 3 3 GLY GLY B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 HYP 6 5 5 HYP HYP B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 PRO 8 7 7 PRO PRO B . n B 1 9 HYP 9 8 8 HYP HYP B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 ASP 11 10 10 ASP ASP B . n B 1 12 ASP 12 11 11 ASP ASP B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 PRO 14 13 13 PRO PRO B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 ALA 17 16 16 ALA ALA B . n B 1 18 GLU 18 17 17 GLU GLU B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 PRO 20 19 19 PRO PRO B . n B 1 21 HYP 21 20 20 HYP HYP B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 PRO 23 22 22 PRO PRO B . n B 1 24 HYP 24 23 23 HYP HYP B . n B 1 25 GLY 25 24 24 GLY GLY B . n B 1 26 PRO 26 25 25 PRO PRO B . n B 1 27 HYP 27 26 26 HYP HYP B . n B 1 28 GLY 28 27 27 GLY GLY B . n B 1 29 NH2 29 28 ? ? ? B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 PRO 2 1 1 PRO PRO C . n C 1 3 HYP 3 2 2 HYP HYP C . n C 1 4 GLY 4 3 3 GLY GLY C . n C 1 5 PRO 5 4 4 PRO PRO C . n C 1 6 HYP 6 5 5 HYP HYP C . n C 1 7 GLY 7 6 6 GLY GLY C . n C 1 8 PRO 8 7 7 PRO PRO C . n C 1 9 HYP 9 8 8 HYP HYP C . n C 1 10 GLY 10 9 9 GLY GLY C . n C 1 11 ASP 11 10 10 ASP ASP C . n C 1 12 ASP 12 11 11 ASP ASP C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 PRO 14 13 13 PRO PRO C . n C 1 15 SER 15 14 14 SER SER C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 ALA 17 16 16 ALA ALA C . n C 1 18 GLU 18 17 17 GLU GLU C . n C 1 19 GLY 19 18 18 GLY GLY C . n C 1 20 PRO 20 19 19 PRO PRO C . n C 1 21 HYP 21 20 20 HYP HYP C . n C 1 22 GLY 22 21 21 GLY GLY C . n C 1 23 PRO 23 22 22 PRO PRO C . n C 1 24 HYP 24 23 23 HYP HYP C . n C 1 25 GLY 25 24 24 GLY GLY C . n C 1 26 PRO 26 25 25 PRO PRO C . n C 1 27 HYP 27 26 26 HYP HYP C . n C 1 28 GLY 28 27 27 GLY GLY C . n C 1 29 NH2 29 28 28 NH2 NH2 C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 20 HOH HOH A . D 2 HOH 2 102 58 HOH HOH A . D 2 HOH 3 103 54 HOH HOH A . D 2 HOH 4 104 38 HOH HOH A . D 2 HOH 5 105 45 HOH HOH A . D 2 HOH 6 106 26 HOH HOH A . D 2 HOH 7 107 30 HOH HOH A . D 2 HOH 8 108 11 HOH HOH A . D 2 HOH 9 109 24 HOH HOH A . D 2 HOH 10 110 64 HOH HOH A . D 2 HOH 11 111 63 HOH HOH A . D 2 HOH 12 112 47 HOH HOH A . D 2 HOH 13 113 28 HOH HOH A . D 2 HOH 14 114 31 HOH HOH A . D 2 HOH 15 115 2 HOH HOH A . D 2 HOH 16 116 18 HOH HOH A . D 2 HOH 17 117 82 HOH HOH A . D 2 HOH 18 118 76 HOH HOH A . D 2 HOH 19 119 16 HOH HOH A . D 2 HOH 20 120 34 HOH HOH A . D 2 HOH 21 121 62 HOH HOH A . D 2 HOH 22 122 79 HOH HOH A . D 2 HOH 23 123 65 HOH HOH A . D 2 HOH 24 124 29 HOH HOH A . D 2 HOH 25 125 32 HOH HOH A . D 2 HOH 26 126 78 HOH HOH A . D 2 HOH 27 127 56 HOH HOH A . D 2 HOH 28 128 75 HOH HOH A . D 2 HOH 29 129 69 HOH HOH A . D 2 HOH 30 130 50 HOH HOH A . D 2 HOH 31 131 83 HOH HOH A . E 2 HOH 1 101 59 HOH HOH B . E 2 HOH 2 102 21 HOH HOH B . E 2 HOH 3 103 33 HOH HOH B . E 2 HOH 4 104 9 HOH HOH B . E 2 HOH 5 105 81 HOH HOH B . E 2 HOH 6 106 70 HOH HOH B . E 2 HOH 7 107 48 HOH HOH B . E 2 HOH 8 108 60 HOH HOH B . E 2 HOH 9 109 25 HOH HOH B . E 2 HOH 10 110 10 HOH HOH B . E 2 HOH 11 111 17 HOH HOH B . E 2 HOH 12 112 68 HOH HOH B . E 2 HOH 13 113 46 HOH HOH B . E 2 HOH 14 114 6 HOH HOH B . E 2 HOH 15 115 22 HOH HOH B . E 2 HOH 16 116 14 HOH HOH B . E 2 HOH 17 117 43 HOH HOH B . E 2 HOH 18 118 67 HOH HOH B . E 2 HOH 19 119 8 HOH HOH B . E 2 HOH 20 120 51 HOH HOH B . E 2 HOH 21 121 72 HOH HOH B . E 2 HOH 22 122 52 HOH HOH B . E 2 HOH 23 123 84 HOH HOH B . E 2 HOH 24 124 53 HOH HOH B . E 2 HOH 25 125 23 HOH HOH B . E 2 HOH 26 126 74 HOH HOH B . E 2 HOH 27 127 39 HOH HOH B . F 2 HOH 1 101 66 HOH HOH C . F 2 HOH 2 102 55 HOH HOH C . F 2 HOH 3 103 5 HOH HOH C . F 2 HOH 4 104 4 HOH HOH C . F 2 HOH 5 105 13 HOH HOH C . F 2 HOH 6 106 27 HOH HOH C . F 2 HOH 7 107 35 HOH HOH C . F 2 HOH 8 108 1 HOH HOH C . F 2 HOH 9 109 12 HOH HOH C . F 2 HOH 10 110 36 HOH HOH C . F 2 HOH 11 111 42 HOH HOH C . F 2 HOH 12 112 44 HOH HOH C . F 2 HOH 13 113 3 HOH HOH C . F 2 HOH 14 114 7 HOH HOH C . F 2 HOH 15 115 19 HOH HOH C . F 2 HOH 16 116 15 HOH HOH C . F 2 HOH 17 117 40 HOH HOH C . F 2 HOH 18 118 57 HOH HOH C . F 2 HOH 19 119 71 HOH HOH C . F 2 HOH 20 120 41 HOH HOH C . F 2 HOH 21 121 77 HOH HOH C . F 2 HOH 22 122 61 HOH HOH C . F 2 HOH 23 123 37 HOH HOH C . F 2 HOH 24 124 80 HOH HOH C . F 2 HOH 25 125 49 HOH HOH C . F 2 HOH 26 126 73 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4990 ? 1 MORE -23 ? 1 'SSA (A^2)' 4880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-03-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.3764 9.5883 10.5971 0.1782 0.2335 0.2279 0.0538 -0.0173 0.0599 3.4003 1.2817 0.6223 1.4290 1.3390 0.5986 -0.1886 0.6262 0.0804 -0.2450 0.0153 -0.0269 -0.4942 0.0929 -0.0077 'X-RAY DIFFRACTION' 2 ? refined 8.3504 8.9949 28.2549 0.2333 0.3402 0.1889 0.0547 0.0453 0.0270 1.1303 2.0308 1.4536 -1.0509 -0.8112 1.7119 0.0182 -0.0215 -0.3380 -0.3286 -0.6018 0.0249 0.6257 0.1315 -0.1327 'X-RAY DIFFRACTION' 3 ? refined -1.3602 11.1703 39.7710 0.2034 0.0887 0.1592 0.0325 -0.0055 0.0019 1.7919 1.1116 5.3688 -0.2641 2.2798 1.2267 -0.4270 -0.1700 0.1244 0.3850 0.1552 -0.1507 0.2963 0.6414 0.0530 'X-RAY DIFFRACTION' 4 ? refined -15.4674 12.2246 48.4369 0.1541 0.1109 0.1647 0.0411 0.0055 -0.0142 1.1514 0.5260 1.3627 -0.2039 -0.8828 0.7384 0.4006 0.1107 0.1735 -0.0668 -0.1483 0.1276 -0.4684 -0.2199 0.0442 'X-RAY DIFFRACTION' 5 ? refined -24.2761 9.5807 60.5912 0.1775 0.4252 0.2417 -0.1140 0.0786 -0.1023 2.0001 2.0000 7.1176 2.0000 -8.5214 2.5095 0.2253 -0.6263 -0.3517 0.9220 -0.6401 0.3471 -0.5798 -1.0985 0.3812 'X-RAY DIFFRACTION' 6 ? refined 20.3297 10.5522 16.7199 0.1928 0.1756 0.2522 0.0275 0.0311 0.0207 1.3831 0.6243 0.8229 0.0005 0.9775 0.2614 0.0057 -0.2494 -0.3198 0.1738 0.1596 -0.2449 0.1762 0.3327 0.2857 'X-RAY DIFFRACTION' 7 ? refined 6.0732 13.9676 28.0667 0.1727 0.3149 0.1790 0.0523 0.0164 -0.0119 4.7902 1.9403 0.0683 1.9662 -0.5645 -0.2666 0.5910 -0.3811 1.0322 0.2888 -0.0273 0.1316 -0.3125 -0.5912 0.1086 'X-RAY DIFFRACTION' 8 ? refined -12.4393 9.1573 45.4801 0.1245 0.2172 0.1206 0.0200 -0.0272 0.0010 0.4184 0.3779 0.3834 -0.3558 0.0656 0.0504 0.0550 0.0433 0.2126 0.0123 0.0719 0.1377 0.2986 -0.0097 0.0015 'X-RAY DIFFRACTION' 9 ? refined -21.5558 10.7635 65.0329 0.1728 0.3447 0.2094 -0.2853 -0.0243 0.1429 1.0133 0.7598 0.0442 0.2984 -0.2066 -0.0912 0.1250 -0.1656 0.2990 0.1480 -0.0562 0.5069 0.0384 -0.0940 -0.1386 'X-RAY DIFFRACTION' 10 ? refined 19.8874 14.0625 12.4789 0.1127 0.2032 0.1403 -0.0151 -0.0360 0.0062 0.4069 3.7274 1.2397 0.6094 -0.0914 -1.5615 0.1643 -0.0838 -0.0619 0.4076 -0.2258 -0.4975 -0.2775 0.0889 -0.2151 'X-RAY DIFFRACTION' 11 ? refined 5.1615 10.4663 23.1257 0.3208 0.3670 0.1749 -0.0854 0.0422 -0.0362 1.2262 1.8920 4.1615 -1.5237 -0.9973 1.1748 0.2529 0.4561 0.6756 -0.6652 -0.0640 0.2904 -0.5578 -0.1831 0.0677 'X-RAY DIFFRACTION' 12 ? refined -2.9874 6.5776 38.2352 0.1645 0.0102 0.1566 0.0497 -0.0697 -0.0166 1.0097 0.8781 0.7388 -0.8351 -0.0781 -0.3037 -0.0982 -0.0237 -0.0460 -0.0447 0.1302 0.3007 0.1504 -0.0822 0.1041 'X-RAY DIFFRACTION' 13 ? refined -12.4256 11.4297 51.6051 0.1584 0.0602 0.1159 -0.0019 -0.0164 0.0048 1.7008 0.0237 0.0430 -0.1696 0.2370 -0.0097 -0.0298 -0.3792 -0.2469 -0.0498 0.0063 0.1914 -0.0870 -0.0544 0.0222 'X-RAY DIFFRACTION' 14 ? refined -23.1587 14.5794 60.4164 0.1938 0.2809 0.2366 0.0888 0.0577 -0.0498 2.7580 4.2934 1.5507 -0.0534 -0.6430 0.0119 0.0559 -0.1717 -0.4148 0.4393 -0.1730 0.9263 -0.1126 0.1888 0.1872 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 7 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 9 through 13 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 14 through 18 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 19 through 25 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 27 through 28 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 0 through 6 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 7 through 12 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 13 through 24 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 25 through 27 ) ; 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 0 through 6 ) ; 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 7 through 12 ) ; 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 13 through 17 ) ; 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 18 through 24 ) ; 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 25 through 28 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 112 ? ? O C HOH 121 ? ? 2.09 2 1 OD1 B HYP 23 ? ? O B HOH 101 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 128 ? ? 1_555 O C HOH 123 ? ? 1_565 2.11 2 1 OD1 A HYP 2 ? ? 1_555 O B GLU 17 ? A 4_556 2.16 3 1 OD1 C HYP 8 ? ? 1_555 O C ASP 11 ? ? 4_556 2.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ACE 0 ? A ACE 1 2 1 Y 1 B NH2 28 ? B NH2 29 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #