data_6JQ6 # _entry.id 6JQ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JQ6 pdb_00006jq6 10.2210/pdb6jq6/pdb WWPDB D_1300011011 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-12 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JQ6 _pdbx_database_status.recvd_initial_deposition_date 2019-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ren, A.' 1 ? 'Zheng, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 116 _citation.language ? _citation.page_first 10783 _citation.page_last 10791 _citation.title 'Hatchet ribozyme structure and implications for cleavage mechanism.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1902413116 _citation.pdbx_database_id_PubMed 31088965 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, L.' 1 ? primary 'Falschlunger, C.' 2 ? primary 'Huang, K.' 3 ? primary 'Mairhofer, E.' 4 ? primary 'Yuan, S.' 5 0000-0001-9858-4742 primary 'Wang, J.' 6 ? primary 'Patel, D.J.' 7 ? primary 'Micura, R.' 8 ? primary 'Ren, A.' 9 0000-0002-5420-4899 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (81-MER)' 26005.381 1 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 1 ? ? ? ? 3 water nat water 18.015 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UUACUGUGAGAAUCAGUAACAAACAUGUGGGGCUUAUAUCUAAUCUUCGGAUUAGUAUUAGUGCAGACGUUAAAACCAUG U ; _entity_poly.pdbx_seq_one_letter_code_can ;UUACUGUGAGAAUCAGUAACAAACAUGUGGGGCUUAUAUCUAAUCUUCGGAUUAGUAUUAGUGCAGACGUUAAAACCAUG U ; _entity_poly.pdbx_strand_id U _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IRIDIUM HEXAMMINE ION' IRI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 A n 1 4 C n 1 5 U n 1 6 G n 1 7 U n 1 8 G n 1 9 A n 1 10 G n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 A n 1 16 G n 1 17 U n 1 18 A n 1 19 A n 1 20 C n 1 21 A n 1 22 A n 1 23 A n 1 24 C n 1 25 A n 1 26 U n 1 27 G n 1 28 U n 1 29 G n 1 30 G n 1 31 G n 1 32 G n 1 33 C n 1 34 U n 1 35 U n 1 36 A n 1 37 U n 1 38 A n 1 39 U n 1 40 C n 1 41 U n 1 42 A n 1 43 A n 1 44 U n 1 45 C n 1 46 U n 1 47 U n 1 48 C n 1 49 G n 1 50 G n 1 51 A n 1 52 U n 1 53 U n 1 54 A n 1 55 G n 1 56 U n 1 57 A n 1 58 U n 1 59 U n 1 60 A n 1 61 G n 1 62 U n 1 63 G n 1 64 C n 1 65 A n 1 66 G n 1 67 A n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 A n 1 74 A n 1 75 A n 1 76 C n 1 77 C n 1 78 A n 1 79 U n 1 80 G n 1 81 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 81 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U U . n A 1 2 U 2 2 2 U U U . n A 1 3 A 3 3 3 A A U . n A 1 4 C 4 4 4 C C U . n A 1 5 U 5 5 5 U U U . n A 1 6 G 6 6 6 G G U . n A 1 7 U 7 7 7 U U U . n A 1 8 G 8 8 8 G G U . n A 1 9 A 9 9 9 A A U . n A 1 10 G 10 10 10 G G U . n A 1 11 A 11 11 11 A A U . n A 1 12 A 12 12 12 A A U . n A 1 13 U 13 13 13 U U U . n A 1 14 C 14 14 14 C C U . n A 1 15 A 15 15 15 A A U . n A 1 16 G 16 16 16 G G U . n A 1 17 U 17 17 17 U U U . n A 1 18 A 18 18 18 A A U . n A 1 19 A 19 19 19 A A U . n A 1 20 C 20 20 20 C C U . n A 1 21 A 21 21 21 A A U . n A 1 22 A 22 22 22 A A U . n A 1 23 A 23 23 23 A A U . n A 1 24 C 24 24 24 C C U . n A 1 25 A 25 25 25 A A U . n A 1 26 U 26 26 26 U U U . n A 1 27 G 27 27 27 G G U . n A 1 28 U 28 28 28 U U U . n A 1 29 G 29 29 29 G G U . n A 1 30 G 30 30 30 G G U . n A 1 31 G 31 31 31 G G U . n A 1 32 G 32 32 32 G G U . n A 1 33 C 33 33 33 C C U . n A 1 34 U 34 34 34 U U U . n A 1 35 U 35 35 35 U U U . n A 1 36 A 36 36 36 A A U . n A 1 37 U 37 37 37 U U U . n A 1 38 A 38 38 38 A A U . n A 1 39 U 39 39 39 U U U . n A 1 40 C 40 40 40 C C U . n A 1 41 U 41 41 41 U U U . n A 1 42 A 42 42 42 A A U . n A 1 43 A 43 43 43 A A U . n A 1 44 U 44 44 44 U U U . n A 1 45 C 45 45 45 C C U . n A 1 46 U 46 46 46 U U U . n A 1 47 U 47 47 47 U U U . n A 1 48 C 48 48 48 C C U . n A 1 49 G 49 49 49 G G U . n A 1 50 G 50 50 50 G G U . n A 1 51 A 51 51 51 A A U . n A 1 52 U 52 52 52 U U U . n A 1 53 U 53 53 53 U U U . n A 1 54 A 54 54 54 A A U . n A 1 55 G 55 55 55 G G U . n A 1 56 U 56 56 56 U U U . n A 1 57 A 57 57 57 A A U . n A 1 58 U 58 58 58 U U U . n A 1 59 U 59 59 59 U U U . n A 1 60 A 60 60 60 A A U . n A 1 61 G 61 61 61 G G U . n A 1 62 U 62 62 62 U U U . n A 1 63 G 63 63 63 G G U . n A 1 64 C 64 64 64 C C U . n A 1 65 A 65 65 65 A A U . n A 1 66 G 66 66 66 G G U . n A 1 67 A 67 67 67 A A U . n A 1 68 C 68 68 68 C C U . n A 1 69 G 69 69 69 G G U . n A 1 70 U 70 70 70 U U U . n A 1 71 U 71 71 71 U U U . n A 1 72 A 72 72 72 A A U . n A 1 73 A 73 73 73 A A U . n A 1 74 A 74 74 74 A A U . n A 1 75 A 75 75 75 A A U . n A 1 76 C 76 76 76 C C U . n A 1 77 C 77 77 77 C C U . n A 1 78 A 78 78 78 A A U . n A 1 79 U 79 79 79 U U U . n A 1 80 G 80 80 80 G G U . n A 1 81 U 81 81 81 U U U . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRI 1 101 1 IRI IRI U . C 3 HOH 1 201 5 HOH HOH U . C 3 HOH 2 202 8 HOH HOH U . C 3 HOH 3 203 3 HOH HOH U . C 3 HOH 4 204 1 HOH HOH U . C 3 HOH 5 205 6 HOH HOH U . C 3 HOH 6 206 2 HOH HOH U . C 3 HOH 7 207 10 HOH HOH U . C 3 HOH 8 208 12 HOH HOH U . C 3 HOH 9 209 11 HOH HOH U . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6JQ6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 91.830 _cell.length_a_esd ? _cell.length_b 91.830 _cell.length_b_esd ? _cell.length_c 140.627 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JQ6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.20M K-formate, 2.2M (NH4)2SO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-08-02 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.103 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.103 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JQ6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.61 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19049 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.61 _reflns_shell.d_res_low 2.72 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 683 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 2.29 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JQ6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.626 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19049 _refine.ls_number_reflns_R_free 1913 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.05 _refine.ls_percent_reflns_R_free 10.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1996 _refine.ls_R_factor_R_free 0.2293 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1961 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.28 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.55 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1720 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 2.626 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1956 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.236 ? 3053 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.113 ? 983 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 409 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 82 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6257 2.6914 . . 78 683 54.00 . . . 0.4762 . 0.5324 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6914 2.7642 . . 137 1239 97.00 . . . 0.6199 . 0.4634 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7642 2.8455 . . 140 1250 99.00 . . . 0.5640 . 0.4504 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8455 2.9373 . . 138 1273 99.00 . . . 0.4404 . 0.3607 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9373 3.0423 . . 140 1269 100.00 . . . 0.3384 . 0.3033 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0423 3.1641 . . 144 1274 100.00 . . . 0.3233 . 0.2588 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1641 3.3082 . . 137 1261 99.00 . . . 0.2327 . 0.2152 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3082 3.4826 . . 137 1243 98.00 . . . 0.2182 . 0.1794 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4826 3.7008 . . 141 1270 100.00 . . . 0.2172 . 0.1796 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7008 3.9865 . . 141 1286 100.00 . . . 0.2348 . 0.1712 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.9865 4.3876 . . 137 1269 100.00 . . . 0.2186 . 0.1534 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.3876 5.0225 . . 146 1269 100.00 . . . 0.1504 . 0.1480 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.0225 6.3274 . . 153 1264 100.00 . . . 0.1678 . 0.1480 . . . . . . . . . . 'X-RAY DIFFRACTION' 6.3274 79.5636 . . 144 1286 100.00 . . . 0.1831 . 0.1712 . . . . . . . . . . # _struct.entry_id 6JQ6 _struct.title 'Hatchet Ribozyme Structure soaking with Ir(NH3)6+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JQ6 _struct_keywords.text 'ribozyme, hatchet, cleavage, catalysis, non-coding RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JQ6 _struct_ref.pdbx_db_accession 6JQ6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6JQ6 _struct_ref_seq.pdbx_strand_id U _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6JQ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5310 ? 1 MORE 2 ? 1 'SSA (A^2)' 24610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 70.3135000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 19 N1 ? ? U U 1 U A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 19 N6 ? ? U U 1 U A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 18 N1 ? ? U U 2 U A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 18 N6 ? ? U U 2 U A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 17 N3 ? ? U A 3 U U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 17 O4 ? ? U A 3 U U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 59 O4 ? ? U A 3 U U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog8 hydrog ? ? A A 3 N7 ? ? ? 1_555 A U 59 N3 ? ? U A 3 U U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 16 N1 ? ? U C 4 U G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 16 O6 ? ? U C 4 U G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 16 N2 ? ? U C 4 U G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 15 N1 ? ? U U 5 U A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 15 N6 ? ? U U 5 U A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 14 N3 ? ? U G 6 U C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 14 O2 ? ? U G 6 U C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 14 N4 ? ? U G 6 U C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 11 N7 ? ? U U 7 U A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A A 11 N6 ? ? U U 7 U A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A U 39 O4 ? ? U G 8 U U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 13 N3 ? ? ? 1_555 A U 37 O2 ? ? U U 13 U U 37 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 30 N2 ? ? U C 20 U G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 30 N1 ? ? U C 20 U G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 28 O2 ? ? U A 21 U U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A A 21 N7 ? ? ? 1_555 A U 28 N3 ? ? U A 21 U U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog25 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 64 N3 ? ? U G 31 U C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 64 O2 ? ? U G 31 U C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 64 N4 ? ? U G 31 U C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 32 N1 ? ? ? 1_555 A U 62 O2 ? ? U G 32 U U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A G 32 O6 ? ? ? 1_555 A U 62 N3 ? ? U G 32 U U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 61 N1 ? ? U C 33 U G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 61 O6 ? ? U C 33 U G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 61 N2 ? ? U C 33 U G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 60 N1 ? ? U U 34 U A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 60 N6 ? ? U U 34 U A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 58 N3 ? ? U A 36 U U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 58 O4 ? ? U A 36 U U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 57 N1 ? ? U U 37 U A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 57 N6 ? ? U U 37 U A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 56 N3 ? ? U A 38 U U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 56 O4 ? ? U A 38 U U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 55 N1 ? ? U C 40 U G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 55 O6 ? ? U C 40 U G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 55 N2 ? ? U C 40 U G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 54 N1 ? ? U U 41 U A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 54 N6 ? ? U U 41 U A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 42 N1 ? ? ? 1_555 A U 53 N3 ? ? U A 42 U U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 42 N6 ? ? ? 1_555 A U 53 O4 ? ? U A 42 U U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 52 N3 ? ? U A 43 U U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 52 O4 ? ? U A 43 U U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 44 N3 ? ? ? 1_555 A A 51 N1 ? ? U U 44 U A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 44 O4 ? ? ? 1_555 A A 51 N6 ? ? U U 44 U A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 50 N1 ? ? U C 45 U G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 50 O6 ? ? U C 45 U G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 50 N2 ? ? U C 45 U G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 63 N1 ? ? ? 1_555 A G 66 O6 ? ? U G 63 U G 66 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? A G 63 N2 ? ? ? 1_555 A G 66 N7 ? ? U G 63 U G 66 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog57 hydrog ? ? A G 69 N3 ? ? ? 1_555 A A 72 N6 ? ? U G 69 U A 72 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id U _struct_site.pdbx_auth_comp_id IRI _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue IRI U 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 A A 21 ? A U 21 . ? 1_555 ? 2 AC1 5 U A 28 ? U U 28 . ? 1_555 ? 3 AC1 5 G A 29 ? G U 29 . ? 1_555 ? 4 AC1 5 G A 30 ? G U 30 . ? 1_555 ? 5 AC1 5 A A 75 ? A U 75 . ? 11_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O2'" U U 34 ? ? 1_555 O4 U U 47 ? ? 9_556 2.03 2 1 "O2'" U C 68 ? ? 1_555 N1 U A 73 ? ? 11_555 2.04 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 U A 22 ? ? N7 U A 22 ? ? C8 U A 22 ? ? 100.38 103.90 -3.52 0.50 N 2 1 N7 U A 22 ? ? C8 U A 22 ? ? N9 U A 22 ? ? 116.89 113.80 3.08 0.50 N # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -0.7861 _pdbx_refine_tls.origin_y 33.1900 _pdbx_refine_tls.origin_z 55.7008 _pdbx_refine_tls.T[1][1] 0.3843 _pdbx_refine_tls.T[2][2] 0.4884 _pdbx_refine_tls.T[3][3] 0.3857 _pdbx_refine_tls.T[1][2] 0.0453 _pdbx_refine_tls.T[1][3] 0.0816 _pdbx_refine_tls.T[2][3] 0.0319 _pdbx_refine_tls.L[1][1] 0.3856 _pdbx_refine_tls.L[2][2] 0.1095 _pdbx_refine_tls.L[3][3] 0.3828 _pdbx_refine_tls.L[1][2] 0.3491 _pdbx_refine_tls.L[1][3] 0.8492 _pdbx_refine_tls.L[2][3] -0.0798 _pdbx_refine_tls.S[1][1] 0.0516 _pdbx_refine_tls.S[1][2] -0.0261 _pdbx_refine_tls.S[1][3] 0.0009 _pdbx_refine_tls.S[2][1] -0.0272 _pdbx_refine_tls.S[2][2] -0.0846 _pdbx_refine_tls.S[2][3] -0.0316 _pdbx_refine_tls.S[3][1] -0.2338 _pdbx_refine_tls.S[3][2] -0.3384 _pdbx_refine_tls.S[3][3] -0.0001 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 IRI IR IR N N 114 IRI N1 N N N 115 IRI N2 N N N 116 IRI N3 N N N 117 IRI N4 N N N 118 IRI N5 N N N 119 IRI N6 N N N 120 IRI HN11 H N N 121 IRI HN12 H N N 122 IRI HN13 H N N 123 IRI HN21 H N N 124 IRI HN22 H N N 125 IRI HN23 H N N 126 IRI HN31 H N N 127 IRI HN32 H N N 128 IRI HN33 H N N 129 IRI HN41 H N N 130 IRI HN42 H N N 131 IRI HN43 H N N 132 IRI HN51 H N N 133 IRI HN52 H N N 134 IRI HN53 H N N 135 IRI HN61 H N N 136 IRI HN62 H N N 137 IRI HN63 H N N 138 U OP3 O N N 139 U P P N N 140 U OP1 O N N 141 U OP2 O N N 142 U "O5'" O N N 143 U "C5'" C N N 144 U "C4'" C N R 145 U "O4'" O N N 146 U "C3'" C N S 147 U "O3'" O N N 148 U "C2'" C N R 149 U "O2'" O N N 150 U "C1'" C N R 151 U N1 N N N 152 U C2 C N N 153 U O2 O N N 154 U N3 N N N 155 U C4 C N N 156 U O4 O N N 157 U C5 C N N 158 U C6 C N N 159 U HOP3 H N N 160 U HOP2 H N N 161 U "H5'" H N N 162 U "H5''" H N N 163 U "H4'" H N N 164 U "H3'" H N N 165 U "HO3'" H N N 166 U "H2'" H N N 167 U "HO2'" H N N 168 U "H1'" H N N 169 U H3 H N N 170 U H5 H N N 171 U H6 H N N 172 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 IRI IR N1 sing N N 118 IRI IR N2 sing N N 119 IRI IR N3 sing N N 120 IRI IR N4 sing N N 121 IRI IR N5 sing N N 122 IRI IR N6 sing N N 123 IRI N1 HN11 sing N N 124 IRI N1 HN12 sing N N 125 IRI N1 HN13 sing N N 126 IRI N2 HN21 sing N N 127 IRI N2 HN22 sing N N 128 IRI N2 HN23 sing N N 129 IRI N3 HN31 sing N N 130 IRI N3 HN32 sing N N 131 IRI N3 HN33 sing N N 132 IRI N4 HN41 sing N N 133 IRI N4 HN42 sing N N 134 IRI N4 HN43 sing N N 135 IRI N5 HN51 sing N N 136 IRI N5 HN52 sing N N 137 IRI N5 HN53 sing N N 138 IRI N6 HN61 sing N N 139 IRI N6 HN62 sing N N 140 IRI N6 HN63 sing N N 141 U OP3 P sing N N 142 U OP3 HOP3 sing N N 143 U P OP1 doub N N 144 U P OP2 sing N N 145 U P "O5'" sing N N 146 U OP2 HOP2 sing N N 147 U "O5'" "C5'" sing N N 148 U "C5'" "C4'" sing N N 149 U "C5'" "H5'" sing N N 150 U "C5'" "H5''" sing N N 151 U "C4'" "O4'" sing N N 152 U "C4'" "C3'" sing N N 153 U "C4'" "H4'" sing N N 154 U "O4'" "C1'" sing N N 155 U "C3'" "O3'" sing N N 156 U "C3'" "C2'" sing N N 157 U "C3'" "H3'" sing N N 158 U "O3'" "HO3'" sing N N 159 U "C2'" "O2'" sing N N 160 U "C2'" "C1'" sing N N 161 U "C2'" "H2'" sing N N 162 U "O2'" "HO2'" sing N N 163 U "C1'" N1 sing N N 164 U "C1'" "H1'" sing N N 165 U N1 C2 sing N N 166 U N1 C6 sing N N 167 U C2 O2 doub N N 168 U C2 N3 sing N N 169 U N3 C4 sing N N 170 U N3 H3 sing N N 171 U C4 O4 doub N N 172 U C4 C5 sing N N 173 U C5 C6 doub N N 174 U C5 H5 sing N N 175 U C6 H6 sing N N 176 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JQ6 'double helix' 6JQ6 'a-form double helix' 6JQ6 'hairpin loop' 6JQ6 'bulge loop' 6JQ6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 28 1_555 A A 21 1_555 4.283 -2.441 0.307 -9.795 6.097 -94.105 1 U_U28:A21_U U 28 ? U 21 ? 24 4 1 A G 30 1_555 A C 20 1_555 0.327 4.174 0.527 6.452 8.511 147.270 2 U_G30:C20_U U 30 ? U 20 ? 22 2 1 A U 1 1_555 A A 19 1_555 -0.364 -0.237 0.042 -14.019 -8.347 3.149 3 U_U1:A19_U U 1 ? U 19 ? 20 1 1 A U 2 1_555 A A 18 1_555 -0.275 -0.276 0.434 -7.158 1.184 -6.617 4 U_U2:A18_U U 2 ? U 18 ? 20 1 1 A A 3 1_555 A U 17 1_555 -0.223 0.031 0.165 4.800 -13.062 -0.294 5 U_A3:U17_U U 3 ? U 17 ? 20 1 1 A C 4 1_555 A G 16 1_555 0.027 -0.056 0.049 8.349 -18.992 1.071 6 U_C4:G16_U U 4 ? U 16 ? 19 1 1 A U 5 1_555 A A 15 1_555 0.085 -0.222 -0.219 6.933 -15.117 2.169 7 U_U5:A15_U U 5 ? U 15 ? 20 1 1 A G 6 1_555 A C 14 1_555 0.040 -0.311 -0.145 -4.590 -12.152 0.686 8 U_G6:C14_U U 6 ? U 14 ? 19 1 1 A U 7 1_555 A A 11 1_555 4.203 -1.980 -0.104 0.468 -0.642 -100.352 9 U_U7:A11_U U 7 ? U 11 ? 24 4 1 A G 8 1_555 A U 39 1_555 3.884 0.965 -0.794 6.704 25.778 98.524 10 U_G8:U39_U U 8 ? U 39 ? ? 5 1 A G 50 1_555 A C 45 1_555 0.306 0.165 0.422 1.916 0.240 3.444 11 U_G50:C45_U U 50 ? U 45 ? 19 1 1 A A 51 1_555 A U 44 1_555 -0.156 0.196 -0.026 -3.118 -1.329 -2.521 12 U_A51:U44_U U 51 ? U 44 ? 20 1 1 A U 52 1_555 A A 43 1_555 0.124 -0.110 0.292 -8.609 -11.351 2.318 13 U_U52:A43_U U 52 ? U 43 ? 20 1 1 A U 53 1_555 A A 42 1_555 -0.353 -0.030 0.120 -6.078 -8.163 4.363 14 U_U53:A42_U U 53 ? U 42 ? 20 1 1 A A 54 1_555 A U 41 1_555 0.244 0.071 0.078 -1.487 -8.687 1.449 15 U_A54:U41_U U 54 ? U 41 ? 20 1 1 A G 55 1_555 A C 40 1_555 -0.157 -0.216 -0.255 -14.915 -21.549 0.332 16 U_G55:C40_U U 55 ? U 40 ? 19 1 1 A U 56 1_555 A A 38 1_555 -0.337 -0.364 0.026 -2.105 -6.633 -13.124 17 U_U56:A38_U U 56 ? U 38 ? 20 1 1 A A 57 1_555 A U 37 1_555 0.667 -0.250 -0.016 -4.209 -19.182 -1.799 18 U_A57:U37_U U 57 ? U 37 ? 20 1 1 A U 58 1_555 A A 36 1_555 0.001 -0.253 0.249 -2.399 -11.431 5.075 19 U_U58:A36_U U 58 ? U 36 ? 20 1 1 A A 60 1_555 A U 34 1_555 -0.031 -0.067 0.627 10.299 -9.263 -8.137 20 U_A60:U34_U U 60 ? U 34 ? 20 1 1 A G 61 1_555 A C 33 1_555 0.181 -0.395 -0.157 -5.364 -28.505 2.125 21 U_G61:C33_U U 61 ? U 33 ? 19 1 1 A U 62 1_555 A G 32 1_555 2.164 -0.661 0.174 -4.285 -16.322 -7.020 22 U_U62:G32_U U 62 ? U 32 ? 28 1 1 A C 64 1_555 A G 31 1_555 0.114 -0.219 -0.467 16.733 -1.161 1.152 23 U_C64:G31_U U 64 ? U 31 ? 19 1 1 A G 66 1_555 A G 63 1_555 -2.023 -3.215 0.315 8.535 -7.567 90.120 24 U_G66:G63_U U 66 ? U 63 ? 6 3 1 A G 69 1_555 A A 72 1_555 6.022 -1.527 1.831 -41.679 9.644 -38.737 25 U_G69:A72_U U 69 ? U 72 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 28 1_555 A A 21 1_555 A G 30 1_555 A C 20 1_555 -1.344 -6.955 -1.653 -160.459 53.003 100.637 -3.286 1.272 -1.852 26.898 81.429 172.974 1 UU_U28G30:C20A21_UU U 28 ? U 21 ? U 30 ? U 20 ? 1 A G 30 1_555 A C 20 1_555 A U 1 1_555 A A 19 1_555 -2.649 -2.420 -1.774 86.122 -151.953 -39.249 0.253 -1.869 -1.349 77.518 43.935 -174.972 2 UU_G30U1:A19C20_UU U 30 ? U 20 ? U 1 ? U 19 ? 1 A U 1 1_555 A A 19 1_555 A U 2 1_555 A A 18 1_555 0.630 -2.369 3.241 -0.862 -1.278 15.453 -7.763 -3.010 3.384 -4.739 3.195 15.529 3 UU_U1U2:A18A19_UU U 1 ? U 19 ? U 2 ? U 18 ? 1 A U 2 1_555 A A 18 1_555 A A 3 1_555 A U 17 1_555 -0.339 -1.962 2.906 1.543 -2.951 29.402 -3.270 0.962 3.062 -5.791 -3.027 29.586 4 UU_U2A3:U17A18_UU U 2 ? U 18 ? U 3 ? U 17 ? 1 A A 3 1_555 A U 17 1_555 A C 4 1_555 A G 16 1_555 0.567 -1.557 3.052 1.601 4.267 33.399 -3.316 -0.742 2.860 7.382 -2.770 33.699 5 UU_A3C4:G16U17_UU U 3 ? U 17 ? U 4 ? U 16 ? 1 A C 4 1_555 A G 16 1_555 A U 5 1_555 A A 15 1_555 -0.481 -1.803 3.479 -1.690 6.699 26.624 -5.442 0.596 2.969 14.243 3.593 27.490 6 UU_C4U5:A15G16_UU U 4 ? U 16 ? U 5 ? U 15 ? 1 A U 5 1_555 A A 15 1_555 A G 6 1_555 A C 14 1_555 0.404 -1.440 3.466 -1.628 13.044 37.790 -3.596 -0.776 2.818 19.434 2.425 39.932 7 UU_U5G6:C14A15_UU U 5 ? U 15 ? U 6 ? U 14 ? 1 A G 6 1_555 A C 14 1_555 A U 7 1_555 A A 11 1_555 -2.161 -2.259 3.212 0.475 -2.796 85.507 -1.600 1.602 3.261 -2.059 -0.350 85.545 8 UU_G6U7:A11C14_UU U 6 ? U 14 ? U 7 ? U 11 ? 1 A U 7 1_555 A A 11 1_555 A G 8 1_555 A U 39 1_555 3.801 -0.139 3.342 -0.585 5.319 -48.029 -0.256 4.598 3.381 -6.512 -0.716 -48.309 9 UU_U7G8:U39A11_UU U 7 ? U 11 ? U 8 ? U 39 ? 1 A G 50 1_555 A C 45 1_555 A A 51 1_555 A U 44 1_555 -1.015 -1.830 3.348 1.491 -1.197 29.606 -3.315 2.306 3.364 -2.339 -2.915 29.666 10 UU_G50A51:U44C45_UU U 50 ? U 45 ? U 51 ? U 44 ? 1 A A 51 1_555 A U 44 1_555 A U 52 1_555 A A 43 1_555 -0.183 -1.368 3.373 -3.198 2.018 33.367 -2.705 -0.218 3.290 3.501 5.548 33.574 11 UU_A51U52:A43U44_UU U 51 ? U 44 ? U 52 ? U 43 ? 1 A U 52 1_555 A A 43 1_555 A U 53 1_555 A A 42 1_555 0.130 -1.084 3.039 -0.398 7.264 29.928 -3.307 -0.315 2.705 13.810 0.758 30.780 12 UU_U52U53:A42A43_UU U 52 ? U 43 ? U 53 ? U 42 ? 1 A U 53 1_555 A A 42 1_555 A A 54 1_555 A U 41 1_555 0.212 -1.144 3.134 0.119 6.981 33.577 -2.955 -0.342 2.847 11.925 -0.203 34.275 13 UU_U53A54:U41A42_UU U 53 ? U 42 ? U 54 ? U 41 ? 1 A A 54 1_555 A U 41 1_555 A G 55 1_555 A C 40 1_555 0.520 -2.022 3.647 5.417 7.228 31.710 -4.875 0.063 3.165 12.905 -9.671 32.940 14 UU_A54G55:C40U41_UU U 54 ? U 41 ? U 55 ? U 40 ? 1 A G 55 1_555 A C 40 1_555 A U 56 1_555 A A 38 1_555 1.209 -0.713 3.049 -2.977 -0.620 47.432 -0.838 -1.721 2.981 -0.770 3.697 47.524 15 UU_G55U56:A38C40_UU U 55 ? U 40 ? U 56 ? U 38 ? 1 A U 56 1_555 A A 38 1_555 A A 57 1_555 A U 37 1_555 0.827 -1.233 3.348 3.172 9.746 36.893 -3.093 -0.868 2.997 15.047 -4.897 38.243 16 UU_U56A57:U37A38_UU U 56 ? U 38 ? U 57 ? U 37 ? 1 A A 57 1_555 A U 37 1_555 A U 58 1_555 A A 36 1_555 0.629 -1.344 3.290 -0.477 3.212 29.553 -3.281 -1.325 3.120 6.273 0.932 29.727 17 UU_A57U58:A36U37_UU U 57 ? U 37 ? U 58 ? U 36 ? 1 A U 58 1_555 A A 36 1_555 A A 60 1_555 A U 34 1_555 0.106 1.801 3.025 5.646 -8.559 66.629 1.922 0.101 2.803 -7.744 -5.109 67.323 18 UU_U58A60:U34A36_UU U 58 ? U 36 ? U 60 ? U 34 ? 1 A A 60 1_555 A U 34 1_555 A G 61 1_555 A C 33 1_555 0.428 -1.191 3.689 5.742 12.287 39.422 -3.092 0.059 3.223 17.594 -8.222 41.602 19 UU_A60G61:C33U34_UU U 60 ? U 34 ? U 61 ? U 33 ? 1 A G 61 1_555 A C 33 1_555 A U 62 1_555 A G 32 1_555 -0.044 -1.587 3.212 -0.801 8.903 37.825 -3.396 -0.025 2.782 13.505 1.215 38.829 20 UU_G61U62:G32C33_UU U 61 ? U 33 ? U 62 ? U 32 ? 1 A U 62 1_555 A G 32 1_555 A C 64 1_555 A G 31 1_555 -1.551 -1.450 2.752 11.209 6.415 37.805 -2.676 3.235 1.970 9.566 -16.715 39.874 21 UU_U62C64:G31G32_UU U 62 ? U 32 ? U 64 ? U 31 ? 1 A C 64 1_555 A G 31 1_555 A G 66 1_555 A G 63 1_555 2.279 -1.632 5.982 -16.974 15.925 26.536 -6.351 -7.662 2.739 28.671 30.559 35.159 22 UU_C64G66:G63G31_UU U 64 ? U 31 ? U 66 ? U 63 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 91640104 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6JQ6 _atom_sites.fract_transf_matrix[1][1] 0.010890 _atom_sites.fract_transf_matrix[1][2] 0.006287 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012574 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007111 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C IR N O P # loop_