data_6K5U # _entry.id 6K5U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.325 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6K5U WWPDB D_1300012335 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6K5S _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6K5U _pdbx_database_status.recvd_initial_deposition_date 2019-05-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhou, Y.Z.' 1 0000-0002-8542-6048 'Wang, N.N.' 2 ? 'Zhao, Y.C.' 3 ? 'Zeng, Z.X.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of the myb domain of S. pombe Tbf1' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhou, Y.Z.' 1 0000-0002-8542-6048 primary 'Wang, N.N.' 2 ? primary 'Zhao, Y.C.' 3 ? primary 'Zeng, Z.X.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6K5U _cell.details ? _cell.formula_units_Z ? _cell.length_a 105.393 _cell.length_a_esd ? _cell.length_b 105.393 _cell.length_b_esd ? _cell.length_c 41.302 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Telomeric DNA-binding factor trf1' 9116.227 2 ? L420M ? ? 2 water nat water 18.015 119 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SWTKEEEEALLDG(MSE)DLVKGPRWSQILELYGPGGKKSEVLKYRNQVQLKDKARN(MSE)KLFFLKSGQVVPAALQCV TGDLRRD ; _entity_poly.pdbx_seq_one_letter_code_can SWTKEEEEALLDGMDLVKGPRWSQILELYGPGGKKSEVLKYRNQVQLKDKARNMKLFFLKSGQVVPAALQCVTGDLRRD _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TRP n 1 3 THR n 1 4 LYS n 1 5 GLU n 1 6 GLU n 1 7 GLU n 1 8 GLU n 1 9 ALA n 1 10 LEU n 1 11 LEU n 1 12 ASP n 1 13 GLY n 1 14 MSE n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 LYS n 1 19 GLY n 1 20 PRO n 1 21 ARG n 1 22 TRP n 1 23 SER n 1 24 GLN n 1 25 ILE n 1 26 LEU n 1 27 GLU n 1 28 LEU n 1 29 TYR n 1 30 GLY n 1 31 PRO n 1 32 GLY n 1 33 GLY n 1 34 LYS n 1 35 LYS n 1 36 SER n 1 37 GLU n 1 38 VAL n 1 39 LEU n 1 40 LYS n 1 41 TYR n 1 42 ARG n 1 43 ASN n 1 44 GLN n 1 45 VAL n 1 46 GLN n 1 47 LEU n 1 48 LYS n 1 49 ASP n 1 50 LYS n 1 51 ALA n 1 52 ARG n 1 53 ASN n 1 54 MSE n 1 55 LYS n 1 56 LEU n 1 57 PHE n 1 58 PHE n 1 59 LEU n 1 60 LYS n 1 61 SER n 1 62 GLY n 1 63 GLN n 1 64 VAL n 1 65 VAL n 1 66 PRO n 1 67 ALA n 1 68 ALA n 1 69 LEU n 1 70 GLN n 1 71 CYS n 1 72 VAL n 1 73 THR n 1 74 GLY n 1 75 ASP n 1 76 LEU n 1 77 ARG n 1 78 ARG n 1 79 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'trf1, SPBC19G7.13' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '972 / ATCC 24843' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe (strain 972 / ATCC 24843)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant '972 / ATCC 24843' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRF1_SCHPO _struct_ref.pdbx_db_accession Q6E434 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SWTKEEEEALLDGLDLVKGPRWSQILELYGPGGKKSEVLKYRNQVQLKDKARNMKLFFLKSGQVVPAALQCVTGDLRRD _struct_ref.pdbx_align_begin 407 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6K5U A 1 ? 79 ? Q6E434 407 ? 485 ? 407 485 2 1 6K5U B 1 ? 79 ? Q6E434 407 ? 485 ? 407 485 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6K5U MSE A 14 ? UNP Q6E434 LEU 420 'engineered mutation' 420 1 2 6K5U MSE B 14 ? UNP Q6E434 LEU 420 'engineered mutation' 420 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6K5U _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '16% PEG 8000, 40mM Potassium phosphate dibasic, 20% Glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-01-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97778 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97778 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 26.390 _reflns.entry_id 6K5U _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.079 _reflns.d_resolution_low 40 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14514 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 24.7 _reflns.pdbx_Rmerge_I_obs 0.185 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.455 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.368 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.189 _reflns.pdbx_Rpim_I_all 0.038 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.14 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 696 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.873 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 23.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.494 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.893 _reflns_shell.pdbx_Rpim_I_all 0.183 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.964 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 63.070 _refine.B_iso_mean 29.0306 _refine.B_iso_min 13.440 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6K5U _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0790 _refine.ls_d_res_low 37.2620 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14482 _refine.ls_number_reflns_R_free 737 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5500 _refine.ls_percent_reflns_R_free 5.0900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1912 _refine.ls_R_factor_R_free 0.2221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1894 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.0700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0790 _refine_hist.d_res_low 37.2620 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1365 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 156 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 34.29 _refine_hist.pdbx_number_atoms_protein 1246 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0790 2.2395 2777 . 126 2651 98.0000 . . . 0.2356 0.0000 0.1819 . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.2395 2.4648 2851 . 144 2707 100.0000 . . . 0.2344 0.0000 0.1837 . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.4648 2.8213 2869 . 165 2704 100.0000 . . . 0.2565 0.0000 0.2039 . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.8213 3.5541 2914 . 138 2776 100.0000 . . . 0.2272 0.0000 0.1980 . . . . . . 5 . . . 'X-RAY DIFFRACTION' 3.5541 37.2680 3071 . 164 2907 100.0000 . . . 0.2017 0.0000 0.1824 . . . . . . 5 . . . # _struct.entry_id 6K5U _struct.title 'Crystal structure of the myb domain of S. pombe Tbf1' _struct.pdbx_descriptor 'Telomeric DNA-binding factor trf1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6K5U _struct_keywords.text 'Telomere binding protein, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 3 ? VAL A 17 ? THR A 409 VAL A 423 1 ? 15 HELX_P HELX_P2 AA2 ARG A 21 ? GLY A 30 ? ARG A 427 GLY A 436 1 ? 10 HELX_P HELX_P3 AA3 ASN A 43 ? SER A 61 ? ASN A 449 SER A 467 1 ? 19 HELX_P HELX_P4 AA4 PRO A 66 ? VAL A 72 ? PRO A 472 VAL A 478 5 ? 7 HELX_P HELX_P5 AA5 THR B 3 ? LYS B 18 ? THR B 409 LYS B 424 1 ? 16 HELX_P HELX_P6 AA6 ARG B 21 ? GLY B 30 ? ARG B 427 GLY B 436 1 ? 10 HELX_P HELX_P7 AA7 ASN B 43 ? SER B 61 ? ASN B 449 SER B 467 1 ? 19 HELX_P HELX_P8 AA8 PRO B 66 ? VAL B 72 ? PRO B 472 VAL B 478 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLY 13 C ? ? ? 1_555 A MSE 14 N ? ? A GLY 419 A MSE 420 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A ASP 15 N ? ? A MSE 420 A ASP 421 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale both ? A ASN 53 C ? ? ? 1_555 A MSE 54 N ? ? A ASN 459 A MSE 460 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A MSE 54 C ? ? ? 1_555 A LYS 55 N ? ? A MSE 460 A LYS 461 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale both ? B GLY 13 C ? ? ? 1_555 B MSE 14 N ? ? B GLY 419 B MSE 420 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? B MSE 14 C ? ? ? 1_555 B ASP 15 N ? ? B MSE 420 B ASP 421 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale both ? B ASN 53 C ? ? ? 1_555 B MSE 54 N ? ? B ASN 459 B MSE 460 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale both ? B MSE 54 C ? ? ? 1_555 B LYS 55 N ? ? B MSE 460 B LYS 461 1_555 ? ? ? ? ? ? ? 1.339 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 19 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 425 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 20 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 426 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.92 # _atom_sites.entry_id 6K5U _atom_sites.fract_transf_matrix[1][1] 0.009488 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009488 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024212 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 407 407 SER SER A . n A 1 2 TRP 2 408 408 TRP TRP A . n A 1 3 THR 3 409 409 THR THR A . n A 1 4 LYS 4 410 410 LYS LYS A . n A 1 5 GLU 5 411 411 GLU GLU A . n A 1 6 GLU 6 412 412 GLU GLU A . n A 1 7 GLU 7 413 413 GLU GLU A . n A 1 8 GLU 8 414 414 GLU GLU A . n A 1 9 ALA 9 415 415 ALA ALA A . n A 1 10 LEU 10 416 416 LEU LEU A . n A 1 11 LEU 11 417 417 LEU LEU A . n A 1 12 ASP 12 418 418 ASP ASP A . n A 1 13 GLY 13 419 419 GLY GLY A . n A 1 14 MSE 14 420 420 MSE MSE A . n A 1 15 ASP 15 421 421 ASP ASP A . n A 1 16 LEU 16 422 422 LEU LEU A . n A 1 17 VAL 17 423 423 VAL VAL A . n A 1 18 LYS 18 424 424 LYS LYS A . n A 1 19 GLY 19 425 425 GLY GLY A . n A 1 20 PRO 20 426 426 PRO PRO A . n A 1 21 ARG 21 427 427 ARG ARG A . n A 1 22 TRP 22 428 428 TRP TRP A . n A 1 23 SER 23 429 429 SER SER A . n A 1 24 GLN 24 430 430 GLN GLN A . n A 1 25 ILE 25 431 431 ILE ILE A . n A 1 26 LEU 26 432 432 LEU LEU A . n A 1 27 GLU 27 433 433 GLU GLU A . n A 1 28 LEU 28 434 434 LEU LEU A . n A 1 29 TYR 29 435 435 TYR TYR A . n A 1 30 GLY 30 436 436 GLY GLY A . n A 1 31 PRO 31 437 437 PRO PRO A . n A 1 32 GLY 32 438 438 GLY GLY A . n A 1 33 GLY 33 439 439 GLY GLY A . n A 1 34 LYS 34 440 440 LYS LYS A . n A 1 35 LYS 35 441 441 LYS LYS A . n A 1 36 SER 36 442 442 SER SER A . n A 1 37 GLU 37 443 443 GLU GLU A . n A 1 38 VAL 38 444 444 VAL VAL A . n A 1 39 LEU 39 445 445 LEU LEU A . n A 1 40 LYS 40 446 446 LYS LYS A . n A 1 41 TYR 41 447 447 TYR TYR A . n A 1 42 ARG 42 448 448 ARG ARG A . n A 1 43 ASN 43 449 449 ASN ASN A . n A 1 44 GLN 44 450 450 GLN GLN A . n A 1 45 VAL 45 451 451 VAL VAL A . n A 1 46 GLN 46 452 452 GLN GLN A . n A 1 47 LEU 47 453 453 LEU LEU A . n A 1 48 LYS 48 454 454 LYS LYS A . n A 1 49 ASP 49 455 455 ASP ASP A . n A 1 50 LYS 50 456 456 LYS LYS A . n A 1 51 ALA 51 457 457 ALA ALA A . n A 1 52 ARG 52 458 458 ARG ARG A . n A 1 53 ASN 53 459 459 ASN ASN A . n A 1 54 MSE 54 460 460 MSE MSE A . n A 1 55 LYS 55 461 461 LYS LYS A . n A 1 56 LEU 56 462 462 LEU LEU A . n A 1 57 PHE 57 463 463 PHE PHE A . n A 1 58 PHE 58 464 464 PHE PHE A . n A 1 59 LEU 59 465 465 LEU LEU A . n A 1 60 LYS 60 466 466 LYS LYS A . n A 1 61 SER 61 467 467 SER SER A . n A 1 62 GLY 62 468 468 GLY GLY A . n A 1 63 GLN 63 469 469 GLN GLN A . n A 1 64 VAL 64 470 470 VAL VAL A . n A 1 65 VAL 65 471 471 VAL VAL A . n A 1 66 PRO 66 472 472 PRO PRO A . n A 1 67 ALA 67 473 473 ALA ALA A . n A 1 68 ALA 68 474 474 ALA ALA A . n A 1 69 LEU 69 475 475 LEU LEU A . n A 1 70 GLN 70 476 476 GLN GLN A . n A 1 71 CYS 71 477 477 CYS CYS A . n A 1 72 VAL 72 478 478 VAL VAL A . n A 1 73 THR 73 479 479 THR THR A . n A 1 74 GLY 74 480 480 GLY GLY A . n A 1 75 ASP 75 481 481 ASP ASP A . n A 1 76 LEU 76 482 482 LEU LEU A . n A 1 77 ARG 77 483 483 ARG ARG A . n A 1 78 ARG 78 484 ? ? ? A . n A 1 79 ASP 79 485 ? ? ? A . n B 1 1 SER 1 407 407 SER SER B . n B 1 2 TRP 2 408 408 TRP TRP B . n B 1 3 THR 3 409 409 THR THR B . n B 1 4 LYS 4 410 410 LYS LYS B . n B 1 5 GLU 5 411 411 GLU GLU B . n B 1 6 GLU 6 412 412 GLU GLU B . n B 1 7 GLU 7 413 413 GLU GLU B . n B 1 8 GLU 8 414 414 GLU GLU B . n B 1 9 ALA 9 415 415 ALA ALA B . n B 1 10 LEU 10 416 416 LEU LEU B . n B 1 11 LEU 11 417 417 LEU LEU B . n B 1 12 ASP 12 418 418 ASP ASP B . n B 1 13 GLY 13 419 419 GLY GLY B . n B 1 14 MSE 14 420 420 MSE MSE B . n B 1 15 ASP 15 421 421 ASP ASP B . n B 1 16 LEU 16 422 422 LEU LEU B . n B 1 17 VAL 17 423 423 VAL VAL B . n B 1 18 LYS 18 424 424 LYS LYS B . n B 1 19 GLY 19 425 425 GLY GLY B . n B 1 20 PRO 20 426 426 PRO PRO B . n B 1 21 ARG 21 427 427 ARG ARG B . n B 1 22 TRP 22 428 428 TRP TRP B . n B 1 23 SER 23 429 429 SER SER B . n B 1 24 GLN 24 430 430 GLN GLN B . n B 1 25 ILE 25 431 431 ILE ILE B . n B 1 26 LEU 26 432 432 LEU LEU B . n B 1 27 GLU 27 433 433 GLU GLU B . n B 1 28 LEU 28 434 434 LEU LEU B . n B 1 29 TYR 29 435 435 TYR TYR B . n B 1 30 GLY 30 436 436 GLY GLY B . n B 1 31 PRO 31 437 437 PRO PRO B . n B 1 32 GLY 32 438 438 GLY GLY B . n B 1 33 GLY 33 439 439 GLY GLY B . n B 1 34 LYS 34 440 440 LYS LYS B . n B 1 35 LYS 35 441 441 LYS LYS B . n B 1 36 SER 36 442 442 SER SER B . n B 1 37 GLU 37 443 443 GLU GLU B . n B 1 38 VAL 38 444 444 VAL VAL B . n B 1 39 LEU 39 445 445 LEU LEU B . n B 1 40 LYS 40 446 446 LYS LYS B . n B 1 41 TYR 41 447 447 TYR TYR B . n B 1 42 ARG 42 448 448 ARG ARG B . n B 1 43 ASN 43 449 449 ASN ASN B . n B 1 44 GLN 44 450 450 GLN GLN B . n B 1 45 VAL 45 451 451 VAL VAL B . n B 1 46 GLN 46 452 452 GLN GLN B . n B 1 47 LEU 47 453 453 LEU LEU B . n B 1 48 LYS 48 454 454 LYS LYS B . n B 1 49 ASP 49 455 455 ASP ASP B . n B 1 50 LYS 50 456 456 LYS LYS B . n B 1 51 ALA 51 457 457 ALA ALA B . n B 1 52 ARG 52 458 458 ARG ARG B . n B 1 53 ASN 53 459 459 ASN ASN B . n B 1 54 MSE 54 460 460 MSE MSE B . n B 1 55 LYS 55 461 461 LYS LYS B . n B 1 56 LEU 56 462 462 LEU LEU B . n B 1 57 PHE 57 463 463 PHE PHE B . n B 1 58 PHE 58 464 464 PHE PHE B . n B 1 59 LEU 59 465 465 LEU LEU B . n B 1 60 LYS 60 466 466 LYS LYS B . n B 1 61 SER 61 467 467 SER SER B . n B 1 62 GLY 62 468 468 GLY GLY B . n B 1 63 GLN 63 469 469 GLN GLN B . n B 1 64 VAL 64 470 470 VAL VAL B . n B 1 65 VAL 65 471 471 VAL VAL B . n B 1 66 PRO 66 472 472 PRO PRO B . n B 1 67 ALA 67 473 473 ALA ALA B . n B 1 68 ALA 68 474 474 ALA ALA B . n B 1 69 LEU 69 475 475 LEU LEU B . n B 1 70 GLN 70 476 476 GLN GLN B . n B 1 71 CYS 71 477 477 CYS CYS B . n B 1 72 VAL 72 478 478 VAL VAL B . n B 1 73 THR 73 479 479 THR THR B . n B 1 74 GLY 74 480 480 GLY GLY B . n B 1 75 ASP 75 481 481 ASP ASP B . n B 1 76 LEU 76 482 482 LEU LEU B . n B 1 77 ARG 77 483 483 ARG ARG B . n B 1 78 ARG 78 484 484 ARG ARG B . n B 1 79 ASP 79 485 485 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 501 107 HOH HOH A . C 2 HOH 2 502 3 HOH HOH A . C 2 HOH 3 503 74 HOH HOH A . C 2 HOH 4 504 115 HOH HOH A . C 2 HOH 5 505 80 HOH HOH A . C 2 HOH 6 506 61 HOH HOH A . C 2 HOH 7 507 99 HOH HOH A . C 2 HOH 8 508 81 HOH HOH A . C 2 HOH 9 509 27 HOH HOH A . C 2 HOH 10 510 38 HOH HOH A . C 2 HOH 11 511 41 HOH HOH A . C 2 HOH 12 512 10 HOH HOH A . C 2 HOH 13 513 57 HOH HOH A . C 2 HOH 14 514 43 HOH HOH A . C 2 HOH 15 515 95 HOH HOH A . C 2 HOH 16 516 110 HOH HOH A . C 2 HOH 17 517 1 HOH HOH A . C 2 HOH 18 518 116 HOH HOH A . C 2 HOH 19 519 15 HOH HOH A . C 2 HOH 20 520 30 HOH HOH A . C 2 HOH 21 521 77 HOH HOH A . C 2 HOH 22 522 12 HOH HOH A . C 2 HOH 23 523 71 HOH HOH A . C 2 HOH 24 524 106 HOH HOH A . C 2 HOH 25 525 16 HOH HOH A . C 2 HOH 26 526 78 HOH HOH A . C 2 HOH 27 527 7 HOH HOH A . C 2 HOH 28 528 84 HOH HOH A . C 2 HOH 29 529 94 HOH HOH A . C 2 HOH 30 530 92 HOH HOH A . C 2 HOH 31 531 49 HOH HOH A . C 2 HOH 32 532 60 HOH HOH A . C 2 HOH 33 533 86 HOH HOH A . C 2 HOH 34 534 20 HOH HOH A . C 2 HOH 35 535 48 HOH HOH A . C 2 HOH 36 536 118 HOH HOH A . C 2 HOH 37 537 98 HOH HOH A . C 2 HOH 38 538 108 HOH HOH A . C 2 HOH 39 539 24 HOH HOH A . C 2 HOH 40 540 59 HOH HOH A . C 2 HOH 41 541 47 HOH HOH A . C 2 HOH 42 542 23 HOH HOH A . C 2 HOH 43 543 13 HOH HOH A . C 2 HOH 44 544 79 HOH HOH A . C 2 HOH 45 545 26 HOH HOH A . C 2 HOH 46 546 51 HOH HOH A . C 2 HOH 47 547 63 HOH HOH A . C 2 HOH 48 548 101 HOH HOH A . C 2 HOH 49 549 88 HOH HOH A . C 2 HOH 50 550 56 HOH HOH A . C 2 HOH 51 551 100 HOH HOH A . C 2 HOH 52 552 97 HOH HOH A . C 2 HOH 53 553 82 HOH HOH A . C 2 HOH 54 554 28 HOH HOH A . C 2 HOH 55 555 33 HOH HOH A . C 2 HOH 56 556 89 HOH HOH A . C 2 HOH 57 557 109 HOH HOH A . C 2 HOH 58 558 104 HOH HOH A . D 2 HOH 1 501 73 HOH HOH B . D 2 HOH 2 502 72 HOH HOH B . D 2 HOH 3 503 34 HOH HOH B . D 2 HOH 4 504 54 HOH HOH B . D 2 HOH 5 505 39 HOH HOH B . D 2 HOH 6 506 112 HOH HOH B . D 2 HOH 7 507 87 HOH HOH B . D 2 HOH 8 508 91 HOH HOH B . D 2 HOH 9 509 37 HOH HOH B . D 2 HOH 10 510 85 HOH HOH B . D 2 HOH 11 511 40 HOH HOH B . D 2 HOH 12 512 18 HOH HOH B . D 2 HOH 13 513 103 HOH HOH B . D 2 HOH 14 514 11 HOH HOH B . D 2 HOH 15 515 22 HOH HOH B . D 2 HOH 16 516 90 HOH HOH B . D 2 HOH 17 517 52 HOH HOH B . D 2 HOH 18 518 4 HOH HOH B . D 2 HOH 19 519 102 HOH HOH B . D 2 HOH 20 520 64 HOH HOH B . D 2 HOH 21 521 42 HOH HOH B . D 2 HOH 22 522 6 HOH HOH B . D 2 HOH 23 523 5 HOH HOH B . D 2 HOH 24 524 2 HOH HOH B . D 2 HOH 25 525 113 HOH HOH B . D 2 HOH 26 526 9 HOH HOH B . D 2 HOH 27 527 29 HOH HOH B . D 2 HOH 28 528 65 HOH HOH B . D 2 HOH 29 529 8 HOH HOH B . D 2 HOH 30 530 68 HOH HOH B . D 2 HOH 31 531 14 HOH HOH B . D 2 HOH 32 532 17 HOH HOH B . D 2 HOH 33 533 25 HOH HOH B . D 2 HOH 34 534 96 HOH HOH B . D 2 HOH 35 535 69 HOH HOH B . D 2 HOH 36 536 66 HOH HOH B . D 2 HOH 37 537 111 HOH HOH B . D 2 HOH 38 538 75 HOH HOH B . D 2 HOH 39 539 32 HOH HOH B . D 2 HOH 40 540 76 HOH HOH B . D 2 HOH 41 541 44 HOH HOH B . D 2 HOH 42 542 36 HOH HOH B . D 2 HOH 43 543 45 HOH HOH B . D 2 HOH 44 544 35 HOH HOH B . D 2 HOH 45 545 46 HOH HOH B . D 2 HOH 46 546 19 HOH HOH B . D 2 HOH 47 547 70 HOH HOH B . D 2 HOH 48 548 21 HOH HOH B . D 2 HOH 49 549 83 HOH HOH B . D 2 HOH 50 550 31 HOH HOH B . D 2 HOH 51 551 55 HOH HOH B . D 2 HOH 52 552 93 HOH HOH B . D 2 HOH 53 553 114 HOH HOH B . D 2 HOH 54 554 117 HOH HOH B . D 2 HOH 55 555 62 HOH HOH B . D 2 HOH 56 556 50 HOH HOH B . D 2 HOH 57 557 105 HOH HOH B . D 2 HOH 58 558 119 HOH HOH B . D 2 HOH 59 559 58 HOH HOH B . D 2 HOH 60 560 53 HOH HOH B . D 2 HOH 61 561 67 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 54 A MSE 460 ? MET 'modified residue' 2 B MSE 54 B MSE 460 ? MET 'modified residue' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 546 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-06-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 2 ? 'data scaling' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 3 ? phasing ? ? 'William Furey' fureyw@pitt.edu ? ? ? ? Fortran_77 http://www.imsb.au.dk/~mok/phases/phases.html ? PHASES ? ? package . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 5 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 6K5U _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'L420M is mutated and MET is modified to MSE.' _pdbx_entry_details.source_details ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 442 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -170.25 _pdbx_validate_torsion.psi -176.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 484 ? A ARG 78 2 1 Y 1 A ASP 485 ? A ASP 79 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #