HEADER IMMUNE SYSTEM 21-JUN-19 6KA7 TITLE THE COMPLEX STRUCTURE OF HUMAN IGG FC AND ITS BINDING REPEBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPEBODY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, FC, REPEBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.CHOI,H.KIM REVDAT 2 29-JUL-20 6KA7 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-JUN-20 6KA7 0 JRNL AUTH J.CHOI JRNL TITL THE COMPLEX STRUCTURE OF HUMAN IGG FC AND ITS BINDING JRNL TITL 2 REPEBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2359 - 5.9851 1.00 2858 151 0.2458 0.3009 REMARK 3 2 5.9851 - 4.7572 1.00 2757 145 0.2453 0.2656 REMARK 3 3 4.7572 - 4.1578 1.00 2725 143 0.2196 0.2962 REMARK 3 4 4.1578 - 3.7785 1.00 2696 142 0.2448 0.3732 REMARK 3 5 3.7785 - 3.5081 1.00 2660 140 0.2599 0.3551 REMARK 3 6 3.5081 - 3.3016 1.00 2684 142 0.2847 0.3804 REMARK 3 7 3.3016 - 3.1365 1.00 2672 140 0.3163 0.4064 REMARK 3 8 3.1365 - 3.0001 1.00 2641 139 0.3556 0.4813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6876 REMARK 3 ANGLE : 1.246 9435 REMARK 3 CHIRALITY : 0.064 1150 REMARK 3 PLANARITY : 0.007 1188 REMARK 3 DIHEDRAL : 4.251 3973 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23908 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.24900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL, PEG 4000, SODIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.96300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 SER A 30 REMARK 465 VAL A 31 REMARK 465 THR A 32 REMARK 465 ASP A 33 REMARK 465 ALA A 34 REMARK 465 CYS A 221 REMARK 465 PRO A 222 REMARK 465 GLY A 223 REMARK 465 THR B 7 REMARK 465 PRO B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 10 REMARK 465 GLN B 11 REMARK 465 ILE B 12 REMARK 465 PHE B 13 REMARK 465 PRO B 14 REMARK 465 ASP B 15 REMARK 465 ASP B 16 REMARK 465 LYS B 28 REMARK 465 LYS B 29 REMARK 465 SER B 30 REMARK 465 VAL B 31 REMARK 465 THR B 32 REMARK 465 ASP B 33 REMARK 465 ALA B 34 REMARK 465 VAL B 35 REMARK 465 THR B 36 REMARK 465 ILE B 99 REMARK 465 LEU B 100 REMARK 465 PRO B 101 REMARK 465 ASN B 102 REMARK 465 GLY B 103 REMARK 465 ASP B 202 REMARK 465 ARG B 203 REMARK 465 LEU B 204 REMARK 465 ASP B 218 REMARK 465 CYS B 219 REMARK 465 THR B 220 REMARK 465 CYS B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 465 ILE B 224 REMARK 465 ARG B 225 REMARK 465 TYR B 226 REMARK 465 LEU B 227 REMARK 465 SER B 228 REMARK 465 GLU B 229 REMARK 465 TRP B 230 REMARK 465 ILE B 231 REMARK 465 ASN B 232 REMARK 465 LYS B 233 REMARK 465 HIS B 234 REMARK 465 SER B 235 REMARK 465 ARG B 260 REMARK 465 SER B 261 REMARK 465 ILE B 262 REMARK 465 SER C 267 REMARK 465 HIS C 268 REMARK 465 GLU C 294 REMARK 465 GLN C 295 REMARK 465 TYR C 296 REMARK 465 LYS C 326 REMARK 465 ALA C 327 REMARK 465 LEU C 328 REMARK 465 SER C 444 REMARK 465 PRO C 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 7 OG1 CG2 REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 VAL A 35 CG1 CG2 REMARK 470 THR A 36 OG1 CG2 REMARK 470 GLN A 37 CG CD OE1 NE2 REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 ILE A 59 CG1 CG2 CD1 REMARK 470 TYR A 61 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 HIS A 76 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLN A 168 CG CD OE1 NE2 REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ILE A 224 CG1 CG2 CD1 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 ASN B 38 CG OD1 ND2 REMARK 470 LEU B 40 CG CD1 CD2 REMARK 470 SER B 42 OG REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ASN B 64 CG OD1 ND2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LEU B 172 CG CD1 CD2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 SER B 195 OG REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 SER B 255 OG REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 VAL B 259 CG1 CG2 REMARK 470 LYS C 248 CG CD CE NZ REMARK 470 ILE C 253 CG1 CG2 CD1 REMARK 470 VAL C 266 CG1 CG2 REMARK 470 LYS C 288 CG CD CE NZ REMARK 470 LYS C 290 CG CD CE NZ REMARK 470 GLU C 293 CG CD OE1 OE2 REMARK 470 ASN C 325 CG OD1 ND2 REMARK 470 SER D 267 OG REMARK 470 HIS D 268 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 269 CG CD OE1 OE2 REMARK 470 ASP D 270 CG OD1 OD2 REMARK 470 LYS D 274 CG CD CE NZ REMARK 470 LYS D 290 CG CD CE NZ REMARK 470 ARG D 301 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 360 CG CD CE NZ REMARK 470 ASN D 361 CG OD1 ND2 REMARK 470 LYS D 392 CG CD CE NZ REMARK 470 LYS D 439 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 21 ND2 ASN A 25 2.01 REMARK 500 O SER A 228 ND2 ASN A 232 2.08 REMARK 500 NE2 GLN D 295 O THR D 299 2.11 REMARK 500 O ASN A 41 ND2 ASN A 64 2.12 REMARK 500 OD1 ASP C 401 OG SER C 403 2.15 REMARK 500 O THR B 181 OG SER B 206 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 57.64 -144.95 REMARK 500 ASN A 50 48.69 37.74 REMARK 500 VAL A 56 40.86 -100.36 REMARK 500 ILE A 59 2.90 -67.57 REMARK 500 LEU A 62 72.21 -118.94 REMARK 500 LYS A 74 57.79 -118.88 REMARK 500 LEU A 84 85.92 -47.48 REMARK 500 THR A 88 -33.74 -137.99 REMARK 500 TRP A 94 75.47 49.10 REMARK 500 ASN A 95 -156.26 -129.34 REMARK 500 LEU A 116 44.69 -108.06 REMARK 500 ASN A 119 -144.60 -106.06 REMARK 500 ASN A 143 -144.06 -106.20 REMARK 500 PHE A 153 58.48 -95.60 REMARK 500 LEU A 156 63.12 -101.72 REMARK 500 PHE A 177 39.94 -97.59 REMARK 500 LYS A 179 30.40 -87.65 REMARK 500 LEU A 180 62.90 -108.52 REMARK 500 GLN A 192 58.99 -96.11 REMARK 500 LEU A 204 83.06 -65.95 REMARK 500 HIS A 234 61.43 -109.89 REMARK 500 SER A 235 49.32 -82.80 REMARK 500 ALA A 246 88.83 -162.40 REMARK 500 ASP A 248 17.25 -69.79 REMARK 500 LEU B 26 70.22 -103.08 REMARK 500 SER B 42 21.90 -79.82 REMARK 500 ALA B 48 58.58 -156.73 REMARK 500 SER B 51 -154.67 -112.76 REMARK 500 LEU B 62 82.25 -152.24 REMARK 500 ASN B 64 59.98 -64.66 REMARK 500 TRP B 94 74.94 48.08 REMARK 500 LEU B 116 57.18 -144.58 REMARK 500 SER B 123 -127.50 -146.28 REMARK 500 LEU B 124 117.65 176.80 REMARK 500 PRO B 125 145.67 -39.21 REMARK 500 ASN B 143 -144.53 -116.07 REMARK 500 LEU B 156 86.36 -155.82 REMARK 500 GLN B 170 -20.60 -161.09 REMARK 500 PRO B 173 150.66 -47.15 REMARK 500 GLN B 192 59.25 -110.69 REMARK 500 PRO B 197 97.81 -62.88 REMARK 500 ILE C 253 -40.19 71.54 REMARK 500 ASP C 265 -95.27 65.49 REMARK 500 ASP C 270 77.94 -109.14 REMARK 500 PRO C 271 32.22 -93.18 REMARK 500 ARG C 292 -173.59 -64.96 REMARK 500 TYR C 300 50.16 -91.98 REMARK 500 HIS C 310 -111.95 36.31 REMARK 500 LEU C 358 21.75 -79.84 REMARK 500 SER C 383 -128.42 -108.99 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 6KA7 A 7 262 PDB 6KA7 6KA7 7 262 DBREF 6KA7 B 7 262 PDB 6KA7 6KA7 7 262 DBREF 6KA7 C 238 445 UNP P0DOX5 IGG1_HUMAN 240 447 DBREF 6KA7 D 238 445 UNP P0DOX5 IGG1_HUMAN 240 447 SEQRES 1 A 256 THR PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA SEQRES 2 A 256 GLU THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR SEQRES 3 A 256 ASP ALA VAL THR GLN ASN GLU LEU ASN SER ILE ASP GLN SEQRES 4 A 256 ILE ILE ALA ASN ASN SER ASP ILE LYS SER VAL GLN GLY SEQRES 5 A 256 ILE GLN TYR LEU PRO ASN VAL ARG TYR LEU ALA LEU GLY SEQRES 6 A 256 GLY ASN LYS LEU HIS ASP ILE SER ALA LEU LYS GLU LEU SEQRES 7 A 256 THR ASN LEU THR TYR LEU GLU LEU LYS TRP ASN GLN LEU SEQRES 8 A 256 GLN ILE LEU PRO ASN GLY VAL PHE ASP LYS LEU THR ASN SEQRES 9 A 256 LEU LYS GLU LEU VAL LEU ASN SER ASN GLN LEU GLN SER SEQRES 10 A 256 LEU PRO ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR SEQRES 11 A 256 TYR LEU ASN LEU ALA HIS ASN GLN LEU GLN SER LEU PRO SEQRES 12 A 256 ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR GLY LEU SEQRES 13 A 256 GLU LEU CYS GLY ASN GLN LEU GLN SER LEU PRO GLU GLY SEQRES 14 A 256 VAL PHE ASP LYS LEU THR GLN LEU LYS ASP LEU ARG LEU SEQRES 15 A 256 TYR GLN ASN GLN LEU LYS SER VAL PRO ASP GLY VAL PHE SEQRES 16 A 256 ASP ARG LEU THR SER LEU GLN TYR ILE TRP LEU HIS ASP SEQRES 17 A 256 ASN PRO TRP ASP CYS THR CYS PRO GLY ILE ARG TYR LEU SEQRES 18 A 256 SER GLU TRP ILE ASN LYS HIS SER GLY VAL VAL ARG ASN SEQRES 19 A 256 SER ALA GLY SER VAL ALA PRO ASP SER ALA LYS CYS SER SEQRES 20 A 256 GLY SER GLY LYS PRO VAL ARG SER ILE SEQRES 1 B 256 THR PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA SEQRES 2 B 256 GLU THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR SEQRES 3 B 256 ASP ALA VAL THR GLN ASN GLU LEU ASN SER ILE ASP GLN SEQRES 4 B 256 ILE ILE ALA ASN ASN SER ASP ILE LYS SER VAL GLN GLY SEQRES 5 B 256 ILE GLN TYR LEU PRO ASN VAL ARG TYR LEU ALA LEU GLY SEQRES 6 B 256 GLY ASN LYS LEU HIS ASP ILE SER ALA LEU LYS GLU LEU SEQRES 7 B 256 THR ASN LEU THR TYR LEU GLU LEU LYS TRP ASN GLN LEU SEQRES 8 B 256 GLN ILE LEU PRO ASN GLY VAL PHE ASP LYS LEU THR ASN SEQRES 9 B 256 LEU LYS GLU LEU VAL LEU ASN SER ASN GLN LEU GLN SER SEQRES 10 B 256 LEU PRO ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR SEQRES 11 B 256 TYR LEU ASN LEU ALA HIS ASN GLN LEU GLN SER LEU PRO SEQRES 12 B 256 ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR GLY LEU SEQRES 13 B 256 GLU LEU CYS GLY ASN GLN LEU GLN SER LEU PRO GLU GLY SEQRES 14 B 256 VAL PHE ASP LYS LEU THR GLN LEU LYS ASP LEU ARG LEU SEQRES 15 B 256 TYR GLN ASN GLN LEU LYS SER VAL PRO ASP GLY VAL PHE SEQRES 16 B 256 ASP ARG LEU THR SER LEU GLN TYR ILE TRP LEU HIS ASP SEQRES 17 B 256 ASN PRO TRP ASP CYS THR CYS PRO GLY ILE ARG TYR LEU SEQRES 18 B 256 SER GLU TRP ILE ASN LYS HIS SER GLY VAL VAL ARG ASN SEQRES 19 B 256 SER ALA GLY SER VAL ALA PRO ASP SER ALA LYS CYS SER SEQRES 20 B 256 GLY SER GLY LYS PRO VAL ARG SER ILE SEQRES 1 C 208 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 C 208 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 C 208 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 4 C 208 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 C 208 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 6 C 208 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 C 208 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 C 208 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 9 C 208 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 C 208 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 C 208 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 C 208 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 13 C 208 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 C 208 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 C 208 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 C 208 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 1 D 208 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 D 208 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 D 208 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 4 D 208 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 D 208 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 6 D 208 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 D 208 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 D 208 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 9 D 208 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 D 208 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 D 208 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 D 208 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 13 D 208 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 D 208 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 D 208 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 D 208 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG E 5 14 HET MAN E 6 11 HET NAG E 7 14 HET FUC E 8 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET NAG F 5 14 HET MAN F 6 11 HET NAG F 7 14 HET FUC F 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 5 NAG 8(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 PRO A 8 PHE A 13 1 6 HELIX 2 AA2 ASP A 15 LYS A 27 1 13 HELIX 3 AA3 THR A 36 ASN A 41 1 6 HELIX 4 AA4 GLY A 58 LEU A 62 5 5 HELIX 5 AA5 ILE A 78 LYS A 82 5 5 HELIX 6 AA6 ARG A 225 HIS A 234 1 10 HELIX 7 AA7 ALA A 246 ALA A 250 5 5 HELIX 8 AA8 PRO A 258 ILE A 262 5 5 HELIX 9 AA9 PHE B 18 LEU B 26 1 9 HELIX 10 AB1 ILE B 78 LYS B 82 5 5 HELIX 11 AB2 PRO B 247 ALA B 250 5 4 HELIX 12 AB3 LYS C 246 ILE C 253 1 8 HELIX 13 AB4 GLN C 311 GLY C 316 1 6 HELIX 14 AB5 SER C 354 LEU C 358 5 5 HELIX 15 AB6 LYS C 414 GLN C 419 1 6 HELIX 16 AB7 LEU C 432 TYR C 436 5 5 HELIX 17 AB8 LYS D 246 ILE D 253 1 8 HELIX 18 AB9 GLN D 311 GLY D 316 1 6 HELIX 19 AC1 SER D 354 LYS D 360 5 7 HELIX 20 AC2 LYS D 414 GLY D 420 1 7 HELIX 21 AC3 LEU D 432 TYR D 436 5 5 SHEET 1 AA1 8 GLN A 45 ILE A 47 0 SHEET 2 AA1 8 TYR A 67 ALA A 69 1 O ALA A 69 N ILE A 46 SHEET 3 AA1 8 TYR A 89 GLU A 91 1 O GLU A 91 N LEU A 68 SHEET 4 AA1 8 GLU A 113 VAL A 115 1 O VAL A 115 N LEU A 90 SHEET 5 AA1 8 TYR A 137 ASN A 139 1 O ASN A 139 N LEU A 114 SHEET 6 AA1 8 GLY A 161 GLU A 163 1 O GLU A 163 N LEU A 138 SHEET 7 AA1 8 ASP A 185 ARG A 187 1 O ASP A 185 N LEU A 162 SHEET 8 AA1 8 TYR A 209 TRP A 211 1 O TYR A 209 N LEU A 186 SHEET 1 AA2 8 GLN B 45 ILE B 47 0 SHEET 2 AA2 8 TYR B 67 ALA B 69 1 O TYR B 67 N ILE B 46 SHEET 3 AA2 8 TYR B 89 GLU B 91 1 O GLU B 91 N LEU B 68 SHEET 4 AA2 8 GLU B 113 VAL B 115 1 O VAL B 115 N LEU B 90 SHEET 5 AA2 8 TYR B 137 ASN B 139 1 O TYR B 137 N LEU B 114 SHEET 6 AA2 8 GLY B 161 GLU B 163 1 O GLY B 161 N LEU B 138 SHEET 7 AA2 8 ASP B 185 ARG B 187 1 O ARG B 187 N LEU B 162 SHEET 8 AA2 8 TYR B 209 TRP B 211 1 O TYR B 209 N LEU B 186 SHEET 1 AA3 2 ARG B 239 ASN B 240 0 SHEET 2 AA3 2 SER B 244 VAL B 245 -1 O SER B 244 N ASN B 240 SHEET 1 AA4 3 SER C 239 PHE C 243 0 SHEET 2 AA4 3 GLU C 258 VAL C 264 -1 O VAL C 262 N PHE C 241 SHEET 3 AA4 3 VAL C 302 THR C 307 -1 O SER C 304 N CYS C 261 SHEET 1 AA5 4 VAL C 282 VAL C 284 0 SHEET 2 AA5 4 LYS C 274 VAL C 279 -1 N TRP C 277 O VAL C 284 SHEET 3 AA5 4 GLU C 318 SER C 324 -1 O LYS C 320 N TYR C 278 SHEET 4 AA5 4 ILE C 332 SER C 337 -1 O ILE C 336 N TYR C 319 SHEET 1 AA6 4 GLN C 347 LEU C 351 0 SHEET 2 AA6 4 GLN C 362 PHE C 372 -1 O THR C 366 N LEU C 351 SHEET 3 AA6 4 PHE C 404 ASP C 413 -1 O LEU C 410 N LEU C 365 SHEET 4 AA6 4 TYR C 391 THR C 393 -1 N LYS C 392 O LYS C 409 SHEET 1 AA7 4 GLN C 347 LEU C 351 0 SHEET 2 AA7 4 GLN C 362 PHE C 372 -1 O THR C 366 N LEU C 351 SHEET 3 AA7 4 PHE C 404 ASP C 413 -1 O LEU C 410 N LEU C 365 SHEET 4 AA7 4 VAL C 397 LEU C 398 -1 N VAL C 397 O PHE C 405 SHEET 1 AA8 3 ALA C 378 GLU C 382 0 SHEET 2 AA8 3 PHE C 423 MET C 428 -1 O SER C 424 N GLU C 382 SHEET 3 AA8 3 THR C 437 LEU C 441 -1 O LYS C 439 N CYS C 425 SHEET 1 AA9 4 SER D 239 PHE D 243 0 SHEET 2 AA9 4 GLU D 258 VAL D 264 -1 O VAL D 262 N PHE D 241 SHEET 3 AA9 4 THR D 299 THR D 307 -1 O SER D 304 N CYS D 261 SHEET 4 AA9 4 LYS D 288 THR D 289 -1 N LYS D 288 O VAL D 305 SHEET 1 AB1 4 SER D 239 PHE D 243 0 SHEET 2 AB1 4 GLU D 258 VAL D 264 -1 O VAL D 262 N PHE D 241 SHEET 3 AB1 4 THR D 299 THR D 307 -1 O SER D 304 N CYS D 261 SHEET 4 AB1 4 GLU D 294 GLN D 295 -1 N GLN D 295 O THR D 299 SHEET 1 AB2 4 VAL D 282 VAL D 284 0 SHEET 2 AB2 4 LYS D 274 VAL D 279 -1 N VAL D 279 O VAL D 282 SHEET 3 AB2 4 GLU D 318 SER D 324 -1 O LYS D 320 N TYR D 278 SHEET 4 AB2 4 ILE D 332 SER D 337 -1 O ILE D 336 N TYR D 319 SHEET 1 AB3 4 GLN D 347 LEU D 351 0 SHEET 2 AB3 4 GLN D 362 PHE D 372 -1 O LYS D 370 N GLN D 347 SHEET 3 AB3 4 PHE D 404 ASP D 413 -1 O PHE D 404 N PHE D 372 SHEET 4 AB3 4 TYR D 391 THR D 393 -1 N LYS D 392 O LYS D 409 SHEET 1 AB4 4 GLN D 347 LEU D 351 0 SHEET 2 AB4 4 GLN D 362 PHE D 372 -1 O LYS D 370 N GLN D 347 SHEET 3 AB4 4 PHE D 404 ASP D 413 -1 O PHE D 404 N PHE D 372 SHEET 4 AB4 4 VAL D 397 LEU D 398 -1 N VAL D 397 O PHE D 405 SHEET 1 AB5 3 ALA D 378 GLU D 382 0 SHEET 2 AB5 3 PHE D 423 MET D 428 -1 O SER D 424 N GLU D 382 SHEET 3 AB5 3 THR D 437 LEU D 441 -1 O LYS D 439 N CYS D 425 SSBOND 1 CYS A 219 CYS A 252 1555 1555 2.03 SSBOND 2 CYS C 261 CYS C 321 1555 1555 2.06 SSBOND 3 CYS C 367 CYS C 425 1555 1555 2.02 SSBOND 4 CYS D 261 CYS D 321 1555 1555 2.05 SSBOND 5 CYS D 367 CYS D 425 1555 1555 2.05 LINK ND2 ASN C 297 C1 NAG E 1 1555 1555 1.48 LINK ND2 ASN D 297 C1 NAG F 1 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 8 1555 1555 1.43 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.43 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.43 LINK O6 BMA E 3 C1 MAN E 6 1555 1555 1.43 LINK O2 MAN E 4 C1 NAG E 5 1555 1555 1.44 LINK O2 MAN E 6 C1 NAG E 7 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O6 NAG F 1 C1 FUC F 8 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.43 LINK O6 BMA F 3 C1 MAN F 6 1555 1555 1.43 LINK O2 MAN F 4 C1 NAG F 5 1555 1555 1.44 LINK O2 MAN F 6 C1 NAG F 7 1555 1555 1.45 CISPEP 1 TYR C 373 PRO C 374 0 4.13 CISPEP 2 SER D 267 HIS D 268 0 -10.54 CISPEP 3 TYR D 373 PRO D 374 0 -4.86 CRYST1 59.926 107.420 171.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005836 0.00000