HEADER DNA BINDING PROTEIN 24-JUN-19 6KBD TITLE FUSED TO-MTBCSM1 WITH 2DATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR SYSTEM SINGLE-STRAND-SPECIFIC DEOXYRIBONUCLEASE COMPND 3 CAS10/CSM1 (SUBTYPE III-A),CRISPR SYSTEM SINGLE-STRAND-SPECIFIC COMPND 4 DEOXYRIBONUCLEASE CAS10/CSM1 (SUBTYPE III-A); COMPND 5 CHAIN: A; COMPND 6 SYNONYM: SSDNASE CAS10,CYCLIC OLIGOADENYLATE SYNTHASE,TOCSM1,SSDNASE COMPND 7 CAS10,CYCLIC OLIGOADENYLATE SYNTHASE; COMPND 8 EC: 3.1.-.-,2.7.7.-,3.1.-.-,2.7.7.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: 2DATP,2DATP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS ONNURINEUS NA1, MYCOBACTERIUM SOURCE 3 TUBERCULOSIS H37RV; SOURCE 4 ORGANISM_TAXID: 523850, 83332; SOURCE 5 STRAIN: NA1, ATCC 25618 / H37RV; SOURCE 6 GENE: CSM1, CAS10, TON_0893, CAS10, CSM1, RV2823C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CSM1, POLYMERSASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.LI,Y.HUO,T.JIANG REVDAT 3 22-NOV-23 6KBD 1 REMARK REVDAT 2 27-JAN-21 6KBD 1 JRNL REVDAT 1 24-JUN-20 6KBD 0 JRNL AUTH S.ZHANG,T.LI,Y.HUO,J.YANG,J.FLEMING,M.SHI,Y.WANG,W.WEI,S.GU, JRNL AUTH 2 L.BI,T.JIANG,H.ZHANG JRNL TITL MYCOBACTERIUM TUBERCULOSIS CRISPR/CAS SYSTEM CSM1 HOLDS JRNL TITL 2 CLUES TO THE EVOLUTIONARY RELATIONSHIP BETWEEN DNA JRNL TITL 3 POLYMERASE AND CYCLASE ACTIVITY. JRNL REF INT.J.BIOL.MACROMOL. V. 170 140 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 33352158 JRNL DOI 10.1016/J.IJBIOMAC.2020.12.014 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 735 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2874 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.4075 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15522 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4UW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 8.7 AND 15% PEG 1,500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.65850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 LYS A 62 REMARK 465 GLY A 63 REMARK 465 HIS A 64 REMARK 465 MET A 65 REMARK 465 LYS A 66 REMARK 465 ASN A 67 REMARK 465 ASP A 68 REMARK 465 GLU A 69 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 ARG A 108 REMARK 465 GLU A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 GLN A 112 REMARK 465 PRO A 113 REMARK 465 GLN A 114 REMARK 465 ALA A 115 REMARK 465 GLY A 347 REMARK 465 GLY A 348 REMARK 465 LYS A 349 REMARK 465 ARG A 370 REMARK 465 PHE A 371 REMARK 465 GLY A 372 REMARK 465 GLU A 373 REMARK 465 ILE A 374 REMARK 465 LYS A 375 REMARK 465 GLY A 376 REMARK 465 LEU A 377 REMARK 465 PHE A 378 REMARK 465 GLU A 379 REMARK 465 HIS A 380 REMARK 465 GLY A 381 REMARK 465 HIS A 382 REMARK 465 THR A 383 REMARK 465 GLU A 384 REMARK 465 ARG A 385 REMARK 465 LEU A 386 REMARK 465 ALA A 387 REMARK 465 GLU A 388 REMARK 465 CYS A 389 REMARK 465 PRO A 390 REMARK 465 VAL A 391 REMARK 465 CYS A 392 REMARK 465 GLY A 393 REMARK 465 ARG A 394 REMARK 465 GLU A 395 REMARK 465 LEU A 396 REMARK 465 PRO A 397 REMARK 465 GLU A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 PRO A 403 REMARK 465 SER A 404 REMARK 465 ALA A 405 REMARK 465 SER A 406 REMARK 465 ASP A 407 REMARK 465 PRO A 408 REMARK 465 GLU A 409 REMARK 465 THR A 410 REMARK 465 LYS A 411 REMARK 465 VAL A 412 REMARK 465 ASP A 527 REMARK 465 PRO A 528 REMARK 465 LYS A 529 REMARK 465 GLY A 530 REMARK 465 GLY A 531 REMARK 465 VAL A 532 REMARK 465 ALA A 533 REMARK 465 MET A 534 REMARK 465 GLU A 535 REMARK 465 PHE A 536 REMARK 465 GLY A 537 REMARK 465 ASP A 538 REMARK 465 TYR A 539 REMARK 465 VAL A 540 REMARK 465 LYS A 541 REMARK 465 ARG A 542 REMARK 465 ALA A 543 REMARK 465 SER A 544 REMARK 465 GLY A 545 REMARK 465 ILE A 546 REMARK 465 PHE A 567 REMARK 465 MET A 568 REMARK 465 GLU A 569 REMARK 465 GLN A 570 REMARK 465 GLY A 571 REMARK 465 ASN A 572 REMARK 465 GLY A 573 REMARK 465 LYS A 574 REMARK 465 ARG A 719 REMARK 465 HIS A 720 REMARK 465 ILE A 721 REMARK 465 ALA A 722 REMARK 465 ASP A 723 REMARK 465 TYR A 724 REMARK 465 PHE A 725 REMARK 465 SER A 726 REMARK 465 GLY A 727 REMARK 465 ASN A 728 REMARK 465 GLU A 729 REMARK 465 GLU A 730 REMARK 465 ARG A 731 REMARK 465 GLY A 732 REMARK 465 MET A 733 REMARK 465 ALA A 744 REMARK 465 GLU A 745 REMARK 465 ARG A 746 REMARK 465 ASP A 747 REMARK 465 ASP A 748 REMARK 465 ARG A 749 REMARK 465 ILE A 750 REMARK 465 THR A 751 REMARK 465 LYS A 752 REMARK 465 ALA A 753 REMARK 465 ARG A 754 REMARK 465 TRP A 755 REMARK 465 VAL A 756 REMARK 465 TYR A 757 REMARK 465 PHE A 758 REMARK 465 LEU A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 MET A 762 REMARK 465 ARG A 763 REMARK 465 ASN A 764 REMARK 465 PRO A 765 REMARK 465 THR A 766 REMARK 465 GLY A 767 REMARK 465 ASP A 768 REMARK 465 THR A 769 REMARK 465 ALA A 770 REMARK 465 PRO A 771 REMARK 465 PHE A 772 REMARK 465 GLN A 773 REMARK 465 GLN A 774 REMARK 465 PHE A 775 REMARK 465 ALA A 776 REMARK 465 ASN A 777 REMARK 465 ARG A 778 REMARK 465 LEU A 779 REMARK 465 HIS A 780 REMARK 465 GLN A 781 REMARK 465 TRP A 782 REMARK 465 PHE A 783 REMARK 465 GLN A 784 REMARK 465 ASP A 785 REMARK 465 GLU A 806 REMARK 465 GLU A 807 REMARK 465 SER A 808 REMARK 465 GLU A 809 REMARK 465 HIS A 810 REMARK 465 HIS A 811 REMARK 465 HIS A 812 REMARK 465 HIS A 813 REMARK 465 HIS A 814 REMARK 465 HIS A 815 REMARK 465 HIS A 816 REMARK 465 HIS A 817 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG LYS A 138 OH TYR A 598 1.32 REMARK 500 CB LYS A 138 OH TYR A 598 1.54 REMARK 500 O1A DTP A 902 MG MG A 903 1.64 REMARK 500 O THR A 564 OD1 ASN A 576 1.71 REMARK 500 CD LYS A 138 OH TYR A 598 1.78 REMARK 500 O GLU A 478 N ALA A 480 1.91 REMARK 500 CE2 PHE A 698 CB HIS A 797 1.93 REMARK 500 OD1 ASP A 555 O1A DTP A 902 1.97 REMARK 500 CD1 LEU A 134 CD2 LEU A 140 2.00 REMARK 500 O ILE A 663 O LEU A 697 2.13 REMARK 500 OD1 ASN A 558 NZ LYS A 692 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 130 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 CYS A 217 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 VAL A 556 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 PHE A 652 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 43 33.22 -99.50 REMARK 500 THR A 45 -32.12 -134.66 REMARK 500 PRO A 118 -165.21 -108.38 REMARK 500 PHE A 123 -72.83 -65.40 REMARK 500 ASP A 135 32.39 -158.70 REMARK 500 GLU A 137 0.18 83.07 REMARK 500 LYS A 138 -7.58 78.87 REMARK 500 LEU A 140 10.75 -157.81 REMARK 500 PRO A 141 -110.99 -89.39 REMARK 500 VAL A 142 66.85 36.18 REMARK 500 ASP A 145 169.04 -34.06 REMARK 500 VAL A 146 98.34 -57.62 REMARK 500 ARG A 160 -74.97 -86.47 REMARK 500 LEU A 161 -51.24 -25.52 REMARK 500 PHE A 185 58.08 -112.51 REMARK 500 THR A 190 30.62 -72.15 REMARK 500 ARG A 249 -5.64 -164.18 REMARK 500 SER A 251 -129.86 -98.24 REMARK 500 LYS A 253 94.12 -63.66 REMARK 500 SER A 279 -71.48 -37.62 REMARK 500 GLU A 326 -98.35 32.25 REMARK 500 ASN A 438 30.60 -98.37 REMARK 500 ASN A 469 67.90 39.34 REMARK 500 THR A 470 147.12 167.20 REMARK 500 GLU A 478 -75.43 -66.13 REMARK 500 SER A 479 52.33 -44.02 REMARK 500 GLN A 481 107.28 -41.74 REMARK 500 ASP A 489 58.81 -140.23 REMARK 500 PHE A 491 119.37 -165.59 REMARK 500 VAL A 556 119.34 -28.62 REMARK 500 ASN A 558 24.25 46.82 REMARK 500 THR A 564 -66.11 -95.26 REMARK 500 ASN A 576 54.01 -92.07 REMARK 500 GLN A 594 -56.63 -140.89 REMARK 500 ARG A 602 53.96 -143.38 REMARK 500 LYS A 604 -69.39 -107.03 REMARK 500 ARG A 606 41.24 -152.40 REMARK 500 ASP A 611 -71.57 -51.57 REMARK 500 ASP A 612 -118.58 52.97 REMARK 500 ALA A 614 95.75 -58.16 REMARK 500 GLU A 651 -72.32 -65.21 REMARK 500 PHE A 652 -30.94 -29.20 REMARK 500 PRO A 667 -112.95 -44.27 REMARK 500 ASP A 668 -80.20 -129.86 REMARK 500 PRO A 671 94.17 -53.68 REMARK 500 LYS A 692 71.19 51.03 REMARK 500 ASN A 693 65.27 -153.74 REMARK 500 LEU A 697 -78.32 -59.15 REMARK 500 PHE A 702 61.60 -160.84 REMARK 500 GLU A 716 -77.77 -108.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 555 OD1 REMARK 620 2 VAL A 556 O 101.5 REMARK 620 3 DTP A 902 O1G 102.7 138.4 REMARK 620 4 DTP A 902 O1B 155.5 89.3 82.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 555 OD2 REMARK 620 2 ASP A 627 OD1 85.0 REMARK 620 3 ASP A 628 OD2 49.8 108.9 REMARK 620 4 DTP A 902 O2A 84.0 101.8 119.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTP A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 904 DBREF 6KBD A 1 533 UNP B6YWB8 CAS10_THEON 1 500 DBREF 6KBD A 534 809 UNP P71629 CAS10_MYCTU 534 809 SEQADV 6KBD HIS A 810 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 811 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 812 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 813 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 814 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 815 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 816 UNP P71629 EXPRESSION TAG SEQADV 6KBD HIS A 817 UNP P71629 EXPRESSION TAG SEQRES 1 A 784 MET GLU ILE ASP GLU LEU THR ALA LEU GLY GLY LEU LEU SEQRES 2 A 784 HIS ASP ILE GLY LYS PRO VAL GLN ARG ALA GLY LEU TYR SEQRES 3 A 784 SER GLY ASP HIS SER THR GLN GLY ALA ARG PHE LEU ARG SEQRES 4 A 784 ASP LEU ALA GLU ASN THR GLY ARG ALA GLU TYR GLU LEU SEQRES 5 A 784 LEU SER LEU PHE SER GLU PHE HIS HIS LYS GLY HIS MET SEQRES 6 A 784 LYS ASN ASP GLU LEU MET ILE ARG ARG ILE LYS GLU LEU SEQRES 7 A 784 SER PRO GLU ARG PHE GLY LEU THR MET GLU ASP VAL LEU SEQRES 8 A 784 ASN ALA LEU TRP ILE VAL TYR GLU ALA ASP ASN LEU ALA SEQRES 9 A 784 SER GLY GLU ARG GLU GLU GLY GLN PRO GLN ALA SER ARG SEQRES 10 A 784 PRO LEU TYR SER VAL PHE ASN PRO GLY LYS ALA TYR PRO SEQRES 11 A 784 TRP ALA GLU LEU ASP PHE GLU LYS GLU LEU PRO VAL PRO SEQRES 12 A 784 GLY ASP VAL PHE SER ILE ARG SER GLN ASP TYR ARG GLU SEQRES 13 A 784 LEU VAL LYS ARG LEU TRP GLU GLU LEU SER LYS ALA LYS SEQRES 14 A 784 LEU ARG SER ASP ARG LEU LEU PRO VAL LEU GLU LYS TYR SEQRES 15 A 784 LEU THR PHE VAL SER SER VAL THR SER GLU GLY ASN ILE SEQRES 16 A 784 ILE SER LEU TYR ASP HIS MET ARG MET THR SER ALA ILE SEQRES 17 A 784 ALA LEU ALA MET LEU ARG ALA GLY CYS THR ALA GLU ASP SEQRES 18 A 784 VAL ARG SER GLY ARG CYS ARG LYS GLU LYS ARG PHE LEU SEQRES 19 A 784 LEU ILE GLU GLY ASP PHE SER GLY ILE GLN ASP PHE ILE SEQRES 20 A 784 TYR ARG VAL SER GLY LYS GLY THR LEU LYS TYR LEU ARG SEQRES 21 A 784 ALA ARG SER ALA TYR LEU GLU LEU ILE GLY TRP ASP VAL SEQRES 22 A 784 VAL LEU GLU ILE LEU SER ARG LEU GLY LEU THR ARG ALA SEQRES 23 A 784 ASN VAL VAL PHE ASN ALA GLY GLY HIS PHE MET ILE ILE SEQRES 24 A 784 ALA GLN ASN THR PRO ASP ALA VAL LYS GLU LEU GLU GLU SEQRES 25 A 784 ILE ARG ALA LYS ALA VAL GLU TRP LEU TYR ARG GLU PHE SEQRES 26 A 784 GLU SER ASP LEU TYR LEU ALA ILE GLU TRP GLU PRO VAL SEQRES 27 A 784 SER GLY ARG GLU PHE GLY ARG GLU GLY GLY LYS ASN LEU SEQRES 28 A 784 PHE ALA GLU ALA ARG LYS ARG LEU LYS HIS LYS LEU THR SEQRES 29 A 784 VAL ARG LYS LEU LYS ARG PHE GLY GLU ILE LYS GLY LEU SEQRES 30 A 784 PHE GLU HIS GLY HIS THR GLU ARG LEU ALA GLU CYS PRO SEQRES 31 A 784 VAL CYS GLY ARG GLU LEU PRO GLU GLY LYS LEU GLU PRO SEQRES 32 A 784 SER ALA SER ASP PRO GLU THR LYS VAL CYS PRO THR CYS SEQRES 33 A 784 ASN ARG LEU VAL SER LEU GLY GLY ASN LEU PRO LYS LEU SEQRES 34 A 784 LEU GLY PHE GLY ARG THR ALA LYS ASN ASP ALA GLY VAL SEQRES 35 A 784 LEU VAL GLU GLY PRO PHE SER GLY PHE VAL PRO TYR LEU SEQRES 36 A 784 GLN GLY GLY ARG PRO VAL GLY GLU GLN ILE LEU VAL LYS SEQRES 37 A 784 ASN THR LEU ASN PRO GLY GLU ILE PRO GLU SER ALA GLN SEQRES 38 A 784 PHE VAL PRO TYR PHE VAL ALA ASP TYR PHE LYS LYS ASP SEQRES 39 A 784 PRO LYS GLY GLY VAL ALA MET GLU PHE GLY ASP TYR VAL SEQRES 40 A 784 LYS ARG ALA SER GLY ILE ALA ARG LEU GLY VAL LEU ARG SEQRES 41 A 784 LEU ASP VAL ASP ASN LEU GLY GLN ALA PHE THR HIS GLY SEQRES 42 A 784 PHE MET GLU GLN GLY ASN GLY LYS PHE ASN THR ILE SER SEQRES 43 A 784 ARG THR ALA ALA PHE SER ARG MET LEU SER LEU PHE PHE SEQRES 44 A 784 ARG GLN HIS ILE ASN TYR VAL LEU ALA ARG PRO LYS LEU SEQRES 45 A 784 ARG PRO ILE THR GLY ASP ASP PRO ALA ARG PRO ARG GLU SEQRES 46 A 784 ALA THR ILE ILE TYR SER GLY GLY ASP ASP VAL PHE VAL SEQRES 47 A 784 VAL GLY ALA TRP ASP ASP VAL ILE GLU PHE GLY ILE GLU SEQRES 48 A 784 LEU ARG GLU ARG PHE HIS GLU PHE THR GLN GLY LYS LEU SEQRES 49 A 784 THR VAL SER ALA GLY ILE GLY MET PHE PRO ASP LYS TYR SEQRES 50 A 784 PRO ILE SER VAL MET ALA ARG GLU VAL GLY ASP LEU GLU SEQRES 51 A 784 ASP ALA ALA LYS SER LEU PRO GLY LYS ASN GLY VAL ALA SEQRES 52 A 784 LEU PHE ASP ARG GLU PHE THR PHE GLY TRP ASP GLU LEU SEQRES 53 A 784 LEU SER LYS VAL ILE GLU GLU LYS TYR ARG HIS ILE ALA SEQRES 54 A 784 ASP TYR PHE SER GLY ASN GLU GLU ARG GLY MET ALA PHE SEQRES 55 A 784 ILE TYR LYS LEU LEU GLU LEU LEU ALA GLU ARG ASP ASP SEQRES 56 A 784 ARG ILE THR LYS ALA ARG TRP VAL TYR PHE LEU THR ARG SEQRES 57 A 784 MET ARG ASN PRO THR GLY ASP THR ALA PRO PHE GLN GLN SEQRES 58 A 784 PHE ALA ASN ARG LEU HIS GLN TRP PHE GLN ASP PRO THR SEQRES 59 A 784 ASP ALA LYS GLN LEU LYS THR ALA LEU HIS LEU TYR ILE SEQRES 60 A 784 TYR ARG THR ARG LYS GLU GLU SER GLU HIS HIS HIS HIS SEQRES 61 A 784 HIS HIS HIS HIS HET DTP A 901 30 HET DTP A 902 30 HET MG A 903 1 HET MG A 904 1 HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 DTP 2(C10 H16 N5 O12 P3) FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 ILE A 3 HIS A 14 1 12 HELIX 2 AA2 ILE A 16 ARG A 22 1 7 HELIX 3 AA3 HIS A 30 GLU A 43 1 14 HELIX 4 AA4 ALA A 48 PHE A 59 1 12 HELIX 5 AA5 MET A 71 LEU A 78 1 8 HELIX 6 AA6 SER A 79 PHE A 83 5 5 HELIX 7 AA7 THR A 86 ALA A 104 1 19 HELIX 8 AA8 ARG A 150 ALA A 168 1 19 HELIX 9 AA9 ARG A 171 THR A 184 1 14 HELIX 10 AB1 SER A 197 ALA A 215 1 19 HELIX 11 AB2 THR A 218 SER A 224 1 7 HELIX 12 AB3 GLY A 225 LYS A 229 5 5 HELIX 13 AB4 GLY A 242 TYR A 248 1 7 HELIX 14 AB5 THR A 255 GLY A 282 1 28 HELIX 15 AB6 THR A 284 VAL A 288 5 5 HELIX 16 AB7 THR A 303 GLU A 324 1 22 HELIX 17 AB8 SER A 339 PHE A 343 5 5 HELIX 18 AB9 LEU A 351 VAL A 365 1 15 HELIX 19 AC1 PRO A 414 LEU A 426 1 13 HELIX 20 AC2 ASN A 558 PHE A 563 1 6 HELIX 21 AC3 THR A 577 GLN A 594 1 18 HELIX 22 AC4 HIS A 595 ARG A 602 1 8 HELIX 23 AC5 ALA A 634 THR A 653 1 20 HELIX 24 AC6 PRO A 671 LEU A 689 1 19 HELIX 25 AC7 TRP A 706 LYS A 712 1 7 HELIX 26 AC8 PHE A 735 LEU A 742 1 8 HELIX 27 AC9 THR A 787 ARG A 802 1 16 SHEET 1 AA1 3 LEU A 119 TYR A 120 0 SHEET 2 AA1 3 LYS A 127 TYR A 129 -1 O TYR A 129 N LEU A 119 SHEET 3 AA1 3 GLY A 144 ASP A 145 -1 O GLY A 144 N ALA A 128 SHEET 1 AA2 4 PHE A 290 ALA A 292 0 SHEET 2 AA2 4 HIS A 295 GLN A 301 -1 O MET A 297 N PHE A 290 SHEET 3 AA2 4 PHE A 233 SER A 241 -1 N GLY A 238 O PHE A 296 SHEET 4 AA2 4 TYR A 330 VAL A 338 -1 O TYR A 330 N SER A 241 SHEET 1 AA3 5 VAL A 444 GLU A 445 0 SHEET 2 AA3 5 GLY A 450 LEU A 455 -1 O PHE A 451 N VAL A 444 SHEET 3 AA3 5 LEU A 429 THR A 435 -1 N GLY A 433 O VAL A 452 SHEET 4 AA3 5 GLN A 464 LYS A 468 -1 O LYS A 468 N LEU A 430 SHEET 5 AA3 5 GLN A 481 TYR A 485 1 O GLN A 481 N ILE A 465 SHEET 1 AA4 6 ALA A 619 GLY A 625 0 SHEET 2 AA4 6 ASP A 628 GLY A 633 -1 O PHE A 630 N TYR A 623 SHEET 3 AA4 6 LEU A 549 VAL A 556 -1 N GLY A 550 O GLY A 633 SHEET 4 AA4 6 VAL A 659 PHE A 666 -1 O PHE A 666 N LEU A 549 SHEET 5 AA4 6 GLY A 694 ALA A 696 1 O ALA A 696 N ALA A 661 SHEET 6 AA4 6 PHE A 704 GLY A 705 -1 O PHE A 704 N VAL A 695 SSBOND 1 CYS A 217 CYS A 227 1555 1555 2.09 LINK OD1 ASP A 555 MG MG A 903 1555 1555 1.88 LINK OD2 ASP A 555 MG MG A 904 1555 1555 2.56 LINK O VAL A 556 MG MG A 903 1555 1555 1.97 LINK OD1 ASP A 627 MG MG A 904 1555 1555 2.43 LINK OD2 ASP A 628 MG MG A 904 1555 1555 2.71 LINK O1G DTP A 902 MG MG A 903 1555 1555 1.89 LINK O1B DTP A 902 MG MG A 903 1555 1555 2.34 LINK O2A DTP A 902 MG MG A 904 1555 1555 2.53 SITE 1 AC1 11 PHE A 240 SER A 241 GLY A 242 ILE A 243 SITE 2 AC1 11 GLN A 244 ILE A 247 TYR A 248 SER A 263 SITE 3 AC1 11 LEU A 266 TYR A 623 ASP A 628 SITE 1 AC2 16 ALA A 292 ASP A 555 VAL A 556 ASP A 557 SITE 2 AC2 16 ASN A 558 LEU A 559 GLY A 560 PHE A 563 SITE 3 AC2 16 SER A 585 SER A 589 GLY A 626 ASP A 627 SITE 4 AC2 16 LYS A 687 LYS A 692 MG A 903 MG A 904 SITE 1 AC3 5 ASP A 555 VAL A 556 ASP A 627 LYS A 687 SITE 2 AC3 5 DTP A 902 SITE 1 AC4 4 ASP A 555 ASP A 627 ASP A 628 DTP A 902 CRYST1 57.801 53.317 124.134 90.00 97.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017301 0.000000 0.002364 0.00000 SCALE2 0.000000 0.018756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008131 0.00000