data_6KMD # _entry.id 6KMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6KMD WWPDB D_1300013283 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6KMD _pdbx_database_status.recvd_initial_deposition_date 2019-07-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sugishima, M.' 1 0000-0002-0840-4929 'Wada, K.' 2 0000-0001-7631-4151 'Fukuyama, K.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 295 _citation.language ? _citation.page_first 771 _citation.page_last 782 _citation.title ;Crystal structure of phytochromobilin synthase in complex with biliverdin IX alpha , a key enzyme in the biosynthesis of phytochrome. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA119.011431 _citation.pdbx_database_id_PubMed 31822504 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sugishima, M.' 1 0000-0002-0840-4929 primary 'Wada, K.' 2 0000-0001-7631-4151 primary 'Fukuyama, K.' 3 ? primary 'Yamamoto, K.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6KMD _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.925 _cell.length_a_esd ? _cell.length_b 63.925 _cell.length_b_esd ? _cell.length_c 158.426 _cell.length_c_esd ? _cell.volume 647392.898 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phytochromobilin synthase' 37005.520 1 1.3.7.4 ? ? ? 2 non-polymer syn 'BILIVERDINE IX ALPHA' 582.646 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 176 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGLVPRGSH(MSE)SYTENESSGVSYKKLIHFALEETNTHTLLSPSPLQEKYSSLLS(MSE)DDK TELQ(MSE)LSFEAHKIRLLRSLCIEGSDG(MSE)QVLDFAAFPKPEFDLPIFCANFFTTAK(MSE)NIIVLDLNPLHDI (MSE)DQEDYKEKYYKDLITLGLKYSKLLPWGGKLTSESLRFFSPIVIWTRFSSSPHNHSVLFSAFKDYYQAWLGL (MSE)DRSEGETDASQIACNCEAQHRYLTWRSEKDPGHGVLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCE DGKVNEKRS(MSE)IGKSFENRPWNARGEFIGDRVEIV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMSYTENESSGVSYKKLIHFALEETNTHTLLSPSPLQEKYSSLLSMDDKTELQMLSFEAHK IRLLRSLCIEGSDGMQVLDFAAFPKPEFDLPIFCANFFTTAKMNIIVLDLNPLHDIMDQEDYKEKYYKDLITLGLKYSKL LPWGGKLTSESLRFFSPIVIWTRFSSSPHNHSVLFSAFKDYYQAWLGLMDRSEGETDASQIACNCEAQHRYLTWRSEKDP GHGVLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCEDGKVNEKRSMIGKSFENRPWNARGEFIGDRVEIV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 SER n 1 23 TYR n 1 24 THR n 1 25 GLU n 1 26 ASN n 1 27 GLU n 1 28 SER n 1 29 SER n 1 30 GLY n 1 31 VAL n 1 32 SER n 1 33 TYR n 1 34 LYS n 1 35 LYS n 1 36 LEU n 1 37 ILE n 1 38 HIS n 1 39 PHE n 1 40 ALA n 1 41 LEU n 1 42 GLU n 1 43 GLU n 1 44 THR n 1 45 ASN n 1 46 THR n 1 47 HIS n 1 48 THR n 1 49 LEU n 1 50 LEU n 1 51 SER n 1 52 PRO n 1 53 SER n 1 54 PRO n 1 55 LEU n 1 56 GLN n 1 57 GLU n 1 58 LYS n 1 59 TYR n 1 60 SER n 1 61 SER n 1 62 LEU n 1 63 LEU n 1 64 SER n 1 65 MSE n 1 66 ASP n 1 67 ASP n 1 68 LYS n 1 69 THR n 1 70 GLU n 1 71 LEU n 1 72 GLN n 1 73 MSE n 1 74 LEU n 1 75 SER n 1 76 PHE n 1 77 GLU n 1 78 ALA n 1 79 HIS n 1 80 LYS n 1 81 ILE n 1 82 ARG n 1 83 LEU n 1 84 LEU n 1 85 ARG n 1 86 SER n 1 87 LEU n 1 88 CYS n 1 89 ILE n 1 90 GLU n 1 91 GLY n 1 92 SER n 1 93 ASP n 1 94 GLY n 1 95 MSE n 1 96 GLN n 1 97 VAL n 1 98 LEU n 1 99 ASP n 1 100 PHE n 1 101 ALA n 1 102 ALA n 1 103 PHE n 1 104 PRO n 1 105 LYS n 1 106 PRO n 1 107 GLU n 1 108 PHE n 1 109 ASP n 1 110 LEU n 1 111 PRO n 1 112 ILE n 1 113 PHE n 1 114 CYS n 1 115 ALA n 1 116 ASN n 1 117 PHE n 1 118 PHE n 1 119 THR n 1 120 THR n 1 121 ALA n 1 122 LYS n 1 123 MSE n 1 124 ASN n 1 125 ILE n 1 126 ILE n 1 127 VAL n 1 128 LEU n 1 129 ASP n 1 130 LEU n 1 131 ASN n 1 132 PRO n 1 133 LEU n 1 134 HIS n 1 135 ASP n 1 136 ILE n 1 137 MSE n 1 138 ASP n 1 139 GLN n 1 140 GLU n 1 141 ASP n 1 142 TYR n 1 143 LYS n 1 144 GLU n 1 145 LYS n 1 146 TYR n 1 147 TYR n 1 148 LYS n 1 149 ASP n 1 150 LEU n 1 151 ILE n 1 152 THR n 1 153 LEU n 1 154 GLY n 1 155 LEU n 1 156 LYS n 1 157 TYR n 1 158 SER n 1 159 LYS n 1 160 LEU n 1 161 LEU n 1 162 PRO n 1 163 TRP n 1 164 GLY n 1 165 GLY n 1 166 LYS n 1 167 LEU n 1 168 THR n 1 169 SER n 1 170 GLU n 1 171 SER n 1 172 LEU n 1 173 ARG n 1 174 PHE n 1 175 PHE n 1 176 SER n 1 177 PRO n 1 178 ILE n 1 179 VAL n 1 180 ILE n 1 181 TRP n 1 182 THR n 1 183 ARG n 1 184 PHE n 1 185 SER n 1 186 SER n 1 187 SER n 1 188 PRO n 1 189 HIS n 1 190 ASN n 1 191 HIS n 1 192 SER n 1 193 VAL n 1 194 LEU n 1 195 PHE n 1 196 SER n 1 197 ALA n 1 198 PHE n 1 199 LYS n 1 200 ASP n 1 201 TYR n 1 202 TYR n 1 203 GLN n 1 204 ALA n 1 205 TRP n 1 206 LEU n 1 207 GLY n 1 208 LEU n 1 209 MSE n 1 210 ASP n 1 211 ARG n 1 212 SER n 1 213 GLU n 1 214 GLY n 1 215 GLU n 1 216 THR n 1 217 ASP n 1 218 ALA n 1 219 SER n 1 220 GLN n 1 221 ILE n 1 222 ALA n 1 223 CYS n 1 224 ASN n 1 225 CYS n 1 226 GLU n 1 227 ALA n 1 228 GLN n 1 229 HIS n 1 230 ARG n 1 231 TYR n 1 232 LEU n 1 233 THR n 1 234 TRP n 1 235 ARG n 1 236 SER n 1 237 GLU n 1 238 LYS n 1 239 ASP n 1 240 PRO n 1 241 GLY n 1 242 HIS n 1 243 GLY n 1 244 VAL n 1 245 LEU n 1 246 LYS n 1 247 ARG n 1 248 LEU n 1 249 ILE n 1 250 GLY n 1 251 GLU n 1 252 ASP n 1 253 LEU n 1 254 ALA n 1 255 LYS n 1 256 ASP n 1 257 VAL n 1 258 ILE n 1 259 THR n 1 260 LYS n 1 261 PHE n 1 262 LEU n 1 263 PHE n 1 264 ASN n 1 265 GLY n 1 266 VAL n 1 267 ASN n 1 268 GLU n 1 269 LEU n 1 270 GLY n 1 271 ASN n 1 272 LYS n 1 273 THR n 1 274 PHE n 1 275 LEU n 1 276 ASP n 1 277 TYR n 1 278 PHE n 1 279 PRO n 1 280 GLU n 1 281 TYR n 1 282 ARG n 1 283 CYS n 1 284 GLU n 1 285 ASP n 1 286 GLY n 1 287 LYS n 1 288 VAL n 1 289 ASN n 1 290 GLU n 1 291 LYS n 1 292 ARG n 1 293 SER n 1 294 MSE n 1 295 ILE n 1 296 GLY n 1 297 LYS n 1 298 SER n 1 299 PHE n 1 300 GLU n 1 301 ASN n 1 302 ARG n 1 303 PRO n 1 304 TRP n 1 305 ASN n 1 306 ALA n 1 307 ARG n 1 308 GLY n 1 309 GLU n 1 310 PHE n 1 311 ILE n 1 312 GLY n 1 313 ASP n 1 314 ARG n 1 315 VAL n 1 316 GLU n 1 317 ILE n 1 318 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 318 _entity_src_gen.gene_src_common_name Tomato _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AUREA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Solanum lycopersicum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4081 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q588D6_SOLLC _struct_ref.pdbx_db_accession Q588D6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SYTENESSGVSYKKLIHFALEETNTHTLLSPSPLQEKYSSLLSMDDKTELQMLSFEAHKIRLLRSLCIEGTDGMQVLDFA AFPKPEFDLPIFCANFFTTAKMNIIVLDLNPLHDIMDQEDYKEKYYKDLITLGLKYSKLLPWGGKLTSESLRFFSPIVIW TRFSSSPHNHSVLFSAFKDYYQAWLGLMDRSEGETDASQIACNCEAQHRYLTWRSEKDPGHGVLKRLIGEDLAKDVITKF LFNGVNELGNKTFLDYFPEYRCEDGKVNEKRSMIGKSFENRPWNARGEFIGDRVEIV ; _struct_ref.pdbx_align_begin 46 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6KMD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 318 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q588D6 _struct_ref_seq.db_align_beg 46 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 342 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 46 _struct_ref_seq.pdbx_auth_seq_align_end 342 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6KMD MSE A 1 ? UNP Q588D6 ? ? 'initiating methionine' 25 1 1 6KMD GLY A 2 ? UNP Q588D6 ? ? 'expression tag' 26 2 1 6KMD SER A 3 ? UNP Q588D6 ? ? 'expression tag' 27 3 1 6KMD SER A 4 ? UNP Q588D6 ? ? 'expression tag' 28 4 1 6KMD HIS A 5 ? UNP Q588D6 ? ? 'expression tag' 29 5 1 6KMD HIS A 6 ? UNP Q588D6 ? ? 'expression tag' 30 6 1 6KMD HIS A 7 ? UNP Q588D6 ? ? 'expression tag' 31 7 1 6KMD HIS A 8 ? UNP Q588D6 ? ? 'expression tag' 32 8 1 6KMD HIS A 9 ? UNP Q588D6 ? ? 'expression tag' 33 9 1 6KMD HIS A 10 ? UNP Q588D6 ? ? 'expression tag' 34 10 1 6KMD SER A 11 ? UNP Q588D6 ? ? 'expression tag' 35 11 1 6KMD SER A 12 ? UNP Q588D6 ? ? 'expression tag' 36 12 1 6KMD GLY A 13 ? UNP Q588D6 ? ? 'expression tag' 37 13 1 6KMD LEU A 14 ? UNP Q588D6 ? ? 'expression tag' 38 14 1 6KMD VAL A 15 ? UNP Q588D6 ? ? 'expression tag' 39 15 1 6KMD PRO A 16 ? UNP Q588D6 ? ? 'expression tag' 40 16 1 6KMD ARG A 17 ? UNP Q588D6 ? ? 'expression tag' 41 17 1 6KMD GLY A 18 ? UNP Q588D6 ? ? 'expression tag' 42 18 1 6KMD SER A 19 ? UNP Q588D6 ? ? 'expression tag' 43 19 1 6KMD HIS A 20 ? UNP Q588D6 ? ? 'expression tag' 44 20 1 6KMD MSE A 21 ? UNP Q588D6 ? ? 'expression tag' 45 21 1 6KMD SER A 92 ? UNP Q588D6 THR 116 'engineered mutation' 116 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BLA non-polymer . 'BILIVERDINE IX ALPHA' ? 'C33 H34 N4 O6' 582.646 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6KMD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 8000, magnesium chloride, Tris-HCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-04-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL32XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.975 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL32XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6KMD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 49.77 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31770 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.97 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.21 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.33 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.88 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 5053 _reflns_shell.percent_possible_all 98.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.80 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.864 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'For the model refinement, Bijvoet pairs were merged.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6KMD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2 _refine.ls_d_res_low 43.4756 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17288 _refine.ls_number_reflns_R_free 1111 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.2 _refine.ls_percent_reflns_R_free 5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2115 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1775 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2251 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 2473 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 43.4756 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work 1914 _refine_ls_shell.percent_reflns_obs 97.3 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6KMD _struct.title 'Crystal structure of SeMet-phytochromobilin synthase from tomato in complex with biliverdin' _struct.pdbx_descriptor 'Phytochromobilin synthase (E.C.1.3.7.4)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6KMD _struct_keywords.text 'Substrate complex, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 33 ? THR A 48 ? TYR A 57 THR A 72 1 ? 16 HELX_P HELX_P2 AA2 PRO A 54 ? LYS A 58 ? PRO A 78 LYS A 82 5 ? 5 HELX_P HELX_P3 AA3 GLU A 140 ? LYS A 148 ? GLU A 164 LYS A 172 1 ? 9 HELX_P HELX_P4 AA4 LEU A 150 ? LEU A 161 ? LEU A 174 LEU A 185 1 ? 12 HELX_P HELX_P5 AA5 GLU A 170 ? PHE A 175 ? GLU A 194 PHE A 199 5 ? 6 HELX_P HELX_P6 AA6 SER A 187 ? SER A 212 ? SER A 211 SER A 236 1 ? 26 HELX_P HELX_P7 AA7 ASP A 217 ? ASP A 239 ? ASP A 241 ASP A 263 1 ? 23 HELX_P HELX_P8 AA8 GLY A 241 ? GLY A 250 ? GLY A 265 GLY A 274 1 ? 10 HELX_P HELX_P9 AA9 GLY A 250 ? PHE A 261 ? GLY A 274 PHE A 285 1 ? 12 HELX_P HELX_P10 AB1 THR A 273 ? PHE A 278 ? THR A 297 PHE A 302 1 ? 6 HELX_P HELX_P11 AB2 PRO A 279 ? ARG A 282 ? PRO A 303 ARG A 306 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A SER 64 C ? ? ? 1_555 A MSE 65 N ? ? A SER 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 65 C ? ? ? 1_555 A ASP 66 N ? ? A MSE 89 A ASP 90 1_555 ? ? ? ? ? ? ? 1.336 ? metalc1 metalc ? ? A ASP 67 OD1 ? ? ? 1_555 C MG . MG ? ? A ASP 91 A MG 402 1_555 ? ? ? ? ? ? ? 2.191 ? covale3 covale both ? A GLN 72 C ? ? ? 1_555 A MSE 73 N ? ? A GLN 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale both ? A MSE 73 C ? ? ? 1_555 A LEU 74 N ? ? A MSE 97 A LEU 98 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A GLY 94 C ? ? ? 1_555 A MSE 95 N ? ? A GLY 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale both ? A MSE 95 C ? ? ? 1_555 A GLN 96 N ? ? A MSE 119 A GLN 120 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale both ? A LYS 122 C ? ? ? 1_555 A MSE 123 N ? ? A LYS 146 A MSE 147 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale both ? A MSE 123 C ? ? ? 1_555 A ASN 124 N ? ? A MSE 147 A ASN 148 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale both ? A ILE 136 C ? ? ? 1_555 A MSE 137 N ? ? A ILE 160 A MSE 161 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale both ? A MSE 137 C ? ? ? 1_555 A ASP 138 N ? ? A MSE 161 A ASP 162 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? A LEU 208 C ? ? ? 1_555 A MSE 209 N ? ? A LEU 232 A MSE 233 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale both ? A MSE 209 C ? ? ? 1_555 A ASP 210 N ? ? A MSE 233 A ASP 234 1_555 ? ? ? ? ? ? ? 1.343 ? covale13 covale both ? A SER 293 C ? ? ? 1_555 A MSE 294 N ? ? A SER 317 A MSE 318 1_555 ? ? ? ? ? ? ? 1.334 ? covale14 covale both ? A MSE 294 C ? ? ? 1_555 A ILE 295 N ? ? A MSE 318 A ILE 319 1_555 ? ? ? ? ? ? ? 1.336 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 571 1_555 ? ? ? ? ? ? ? 1.977 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 580 1_555 ? ? ? ? ? ? ? 2.062 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 625 1_555 ? ? ? ? ? ? ? 2.051 ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 502 1_555 ? ? ? ? ? ? ? 2.127 ? metalc6 metalc ? ? A GLU 300 OE1 ? ? ? 1_555 D MG . MG ? ? A GLU 324 A MG 403 3_644 ? ? ? ? ? ? ? 2.623 ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 510 5_645 ? ? ? ? ? ? ? 2.245 ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 402 A HOH 554 5_645 ? ? ? ? ? ? ? 1.935 ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 648 4_565 ? ? ? ? ? ? ? 2.649 ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 518 4_565 ? ? ? ? ? ? ? 2.405 ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 403 A HOH 654 4_565 ? ? ? ? ? ? ? 2.061 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 7 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 51 ? PRO A 52 ? SER A 75 PRO A 76 AA1 2 GLU A 70 ? GLU A 77 ? GLU A 94 GLU A 101 AA1 3 SER A 61 ? LEU A 63 ? SER A 85 LEU A 87 AA2 1 SER A 51 ? PRO A 52 ? SER A 75 PRO A 76 AA2 2 GLU A 70 ? GLU A 77 ? GLU A 94 GLU A 101 AA2 3 ILE A 81 ? GLU A 90 ? ILE A 105 GLU A 114 AA2 4 GLN A 96 ? PRO A 104 ? GLN A 120 PRO A 128 AA2 5 ILE A 112 ? THR A 119 ? ILE A 136 THR A 143 AA2 6 MSE A 123 ? ASN A 131 ? MSE A 147 ASN A 155 AA2 7 ILE A 180 ? SER A 185 ? ILE A 204 SER A 209 AA3 1 LEU A 167 ? THR A 168 ? LEU A 191 THR A 192 AA3 2 LYS A 297 ? SER A 298 ? LYS A 321 SER A 322 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 51 ? N SER A 75 O GLU A 77 ? O GLU A 101 AA1 2 3 O LEU A 71 ? O LEU A 95 N LEU A 62 ? N LEU A 86 AA2 1 2 N SER A 51 ? N SER A 75 O GLU A 77 ? O GLU A 101 AA2 2 3 N PHE A 76 ? N PHE A 100 O LEU A 84 ? O LEU A 108 AA2 3 4 N LEU A 83 ? N LEU A 107 O PHE A 103 ? O PHE A 127 AA2 4 5 N PHE A 100 ? N PHE A 124 O ALA A 115 ? O ALA A 139 AA2 5 6 N ASN A 116 ? N ASN A 140 O VAL A 127 ? O VAL A 151 AA2 6 7 N LEU A 128 ? N LEU A 152 O ILE A 180 ? O ILE A 204 AA3 1 2 N LEU A 167 ? N LEU A 191 O SER A 298 ? O SER A 322 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BLA 401 ? 26 'binding site for residue BLA A 401' AC2 Software A MG 402 ? 6 'binding site for residue MG A 402' AC3 Software A MG 403 ? 6 'binding site for residue MG A 403' AC4 Software A CL 404 ? 3 'binding site for residue CL A 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 26 HIS A 79 ? HIS A 103 . ? 3_644 ? 2 AC1 26 VAL A 97 ? VAL A 121 . ? 1_555 ? 3 AC1 26 CYS A 114 ? CYS A 138 . ? 1_555 ? 4 AC1 26 ASN A 116 ? ASN A 140 . ? 1_555 ? 5 AC1 26 PHE A 118 ? PHE A 142 . ? 1_555 ? 6 AC1 26 ILE A 125 ? ILE A 149 . ? 1_555 ? 7 AC1 26 VAL A 127 ? VAL A 151 . ? 1_555 ? 8 AC1 26 LEU A 167 ? LEU A 191 . ? 1_555 ? 9 AC1 26 THR A 168 ? THR A 192 . ? 1_555 ? 10 AC1 26 SER A 171 ? SER A 195 . ? 1_555 ? 11 AC1 26 PHE A 174 ? PHE A 198 . ? 1_555 ? 12 AC1 26 TRP A 181 ? TRP A 205 . ? 1_555 ? 13 AC1 26 TRP A 234 ? TRP A 258 . ? 1_555 ? 14 AC1 26 ARG A 235 ? ARG A 259 . ? 1_555 ? 15 AC1 26 PRO A 240 ? PRO A 264 . ? 1_555 ? 16 AC1 26 GLY A 241 ? GLY A 265 . ? 1_555 ? 17 AC1 26 LEU A 245 ? LEU A 269 . ? 1_555 ? 18 AC1 26 ARG A 292 ? ARG A 316 . ? 1_555 ? 19 AC1 26 LYS A 297 ? LYS A 321 . ? 1_555 ? 20 AC1 26 HOH F . ? HOH A 525 . ? 1_555 ? 21 AC1 26 HOH F . ? HOH A 528 . ? 1_555 ? 22 AC1 26 HOH F . ? HOH A 533 . ? 1_555 ? 23 AC1 26 HOH F . ? HOH A 558 . ? 1_555 ? 24 AC1 26 HOH F . ? HOH A 561 . ? 1_555 ? 25 AC1 26 HOH F . ? HOH A 563 . ? 1_555 ? 26 AC1 26 HOH F . ? HOH A 574 . ? 1_555 ? 27 AC2 6 ASP A 67 ? ASP A 91 . ? 1_555 ? 28 AC2 6 HOH F . ? HOH A 510 . ? 5_645 ? 29 AC2 6 HOH F . ? HOH A 554 . ? 5_645 ? 30 AC2 6 HOH F . ? HOH A 571 . ? 1_555 ? 31 AC2 6 HOH F . ? HOH A 580 . ? 1_555 ? 32 AC2 6 HOH F . ? HOH A 625 . ? 1_555 ? 33 AC3 6 GLU A 43 ? GLU A 67 . ? 1_555 ? 34 AC3 6 GLU A 300 ? GLU A 324 . ? 4_565 ? 35 AC3 6 HOH F . ? HOH A 502 . ? 1_555 ? 36 AC3 6 HOH F . ? HOH A 518 . ? 4_565 ? 37 AC3 6 HOH F . ? HOH A 648 . ? 4_565 ? 38 AC3 6 HOH F . ? HOH A 654 . ? 4_565 ? 39 AC4 3 THR A 48 ? THR A 72 . ? 3_644 ? 40 AC4 3 ARG A 183 ? ARG A 207 . ? 1_555 ? 41 AC4 3 HOH F . ? HOH A 563 . ? 1_555 ? # _atom_sites.entry_id 6KMD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015643 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015643 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006312 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 25 ? ? ? A . n A 1 2 GLY 2 26 ? ? ? A . n A 1 3 SER 3 27 ? ? ? A . n A 1 4 SER 4 28 ? ? ? A . n A 1 5 HIS 5 29 ? ? ? A . n A 1 6 HIS 6 30 ? ? ? A . n A 1 7 HIS 7 31 ? ? ? A . n A 1 8 HIS 8 32 ? ? ? A . n A 1 9 HIS 9 33 ? ? ? A . n A 1 10 HIS 10 34 ? ? ? A . n A 1 11 SER 11 35 ? ? ? A . n A 1 12 SER 12 36 ? ? ? A . n A 1 13 GLY 13 37 ? ? ? A . n A 1 14 LEU 14 38 ? ? ? A . n A 1 15 VAL 15 39 ? ? ? A . n A 1 16 PRO 16 40 ? ? ? A . n A 1 17 ARG 17 41 ? ? ? A . n A 1 18 GLY 18 42 ? ? ? A . n A 1 19 SER 19 43 ? ? ? A . n A 1 20 HIS 20 44 ? ? ? A . n A 1 21 MSE 21 45 ? ? ? A . n A 1 22 SER 22 46 ? ? ? A . n A 1 23 TYR 23 47 ? ? ? A . n A 1 24 THR 24 48 ? ? ? A . n A 1 25 GLU 25 49 ? ? ? A . n A 1 26 ASN 26 50 ? ? ? A . n A 1 27 GLU 27 51 ? ? ? A . n A 1 28 SER 28 52 ? ? ? A . n A 1 29 SER 29 53 ? ? ? A . n A 1 30 GLY 30 54 ? ? ? A . n A 1 31 VAL 31 55 ? ? ? A . n A 1 32 SER 32 56 56 SER SER A . n A 1 33 TYR 33 57 57 TYR TYR A . n A 1 34 LYS 34 58 58 LYS LYS A . n A 1 35 LYS 35 59 59 LYS LYS A . n A 1 36 LEU 36 60 60 LEU LEU A . n A 1 37 ILE 37 61 61 ILE ILE A . n A 1 38 HIS 38 62 62 HIS HIS A . n A 1 39 PHE 39 63 63 PHE PHE A . n A 1 40 ALA 40 64 64 ALA ALA A . n A 1 41 LEU 41 65 65 LEU LEU A . n A 1 42 GLU 42 66 66 GLU GLU A . n A 1 43 GLU 43 67 67 GLU GLU A . n A 1 44 THR 44 68 68 THR THR A . n A 1 45 ASN 45 69 69 ASN ASN A . n A 1 46 THR 46 70 70 THR THR A . n A 1 47 HIS 47 71 71 HIS HIS A . n A 1 48 THR 48 72 72 THR THR A . n A 1 49 LEU 49 73 73 LEU LEU A . n A 1 50 LEU 50 74 74 LEU LEU A . n A 1 51 SER 51 75 75 SER SER A . n A 1 52 PRO 52 76 76 PRO PRO A . n A 1 53 SER 53 77 77 SER SER A . n A 1 54 PRO 54 78 78 PRO PRO A . n A 1 55 LEU 55 79 79 LEU LEU A . n A 1 56 GLN 56 80 80 GLN GLN A . n A 1 57 GLU 57 81 81 GLU GLU A . n A 1 58 LYS 58 82 82 LYS LYS A . n A 1 59 TYR 59 83 83 TYR TYR A . n A 1 60 SER 60 84 84 SER SER A . n A 1 61 SER 61 85 85 SER SER A . n A 1 62 LEU 62 86 86 LEU LEU A . n A 1 63 LEU 63 87 87 LEU LEU A . n A 1 64 SER 64 88 88 SER SER A . n A 1 65 MSE 65 89 89 MSE MSE A . n A 1 66 ASP 66 90 90 ASP ASP A . n A 1 67 ASP 67 91 91 ASP ASP A . n A 1 68 LYS 68 92 92 LYS LYS A . n A 1 69 THR 69 93 93 THR THR A . n A 1 70 GLU 70 94 94 GLU GLU A . n A 1 71 LEU 71 95 95 LEU LEU A . n A 1 72 GLN 72 96 96 GLN GLN A . n A 1 73 MSE 73 97 97 MSE MSE A . n A 1 74 LEU 74 98 98 LEU LEU A . n A 1 75 SER 75 99 99 SER SER A . n A 1 76 PHE 76 100 100 PHE PHE A . n A 1 77 GLU 77 101 101 GLU GLU A . n A 1 78 ALA 78 102 102 ALA ALA A . n A 1 79 HIS 79 103 103 HIS HIS A . n A 1 80 LYS 80 104 104 LYS LYS A . n A 1 81 ILE 81 105 105 ILE ILE A . n A 1 82 ARG 82 106 106 ARG ARG A . n A 1 83 LEU 83 107 107 LEU LEU A . n A 1 84 LEU 84 108 108 LEU LEU A . n A 1 85 ARG 85 109 109 ARG ARG A . n A 1 86 SER 86 110 110 SER SER A . n A 1 87 LEU 87 111 111 LEU LEU A . n A 1 88 CYS 88 112 112 CYS CYS A . n A 1 89 ILE 89 113 113 ILE ILE A . n A 1 90 GLU 90 114 114 GLU GLU A . n A 1 91 GLY 91 115 115 GLY GLY A . n A 1 92 SER 92 116 116 SER SER A . n A 1 93 ASP 93 117 117 ASP ASP A . n A 1 94 GLY 94 118 118 GLY GLY A . n A 1 95 MSE 95 119 119 MSE MSE A . n A 1 96 GLN 96 120 120 GLN GLN A . n A 1 97 VAL 97 121 121 VAL VAL A . n A 1 98 LEU 98 122 122 LEU LEU A . n A 1 99 ASP 99 123 123 ASP ASP A . n A 1 100 PHE 100 124 124 PHE PHE A . n A 1 101 ALA 101 125 125 ALA ALA A . n A 1 102 ALA 102 126 126 ALA ALA A . n A 1 103 PHE 103 127 127 PHE PHE A . n A 1 104 PRO 104 128 128 PRO PRO A . n A 1 105 LYS 105 129 129 LYS LYS A . n A 1 106 PRO 106 130 130 PRO PRO A . n A 1 107 GLU 107 131 131 GLU GLU A . n A 1 108 PHE 108 132 132 PHE PHE A . n A 1 109 ASP 109 133 133 ASP ASP A . n A 1 110 LEU 110 134 134 LEU LEU A . n A 1 111 PRO 111 135 135 PRO PRO A . n A 1 112 ILE 112 136 136 ILE ILE A . n A 1 113 PHE 113 137 137 PHE PHE A . n A 1 114 CYS 114 138 138 CYS CYS A . n A 1 115 ALA 115 139 139 ALA ALA A . n A 1 116 ASN 116 140 140 ASN ASN A . n A 1 117 PHE 117 141 141 PHE PHE A . n A 1 118 PHE 118 142 142 PHE PHE A . n A 1 119 THR 119 143 143 THR THR A . n A 1 120 THR 120 144 144 THR THR A . n A 1 121 ALA 121 145 145 ALA ALA A . n A 1 122 LYS 122 146 146 LYS LYS A . n A 1 123 MSE 123 147 147 MSE MSE A . n A 1 124 ASN 124 148 148 ASN ASN A . n A 1 125 ILE 125 149 149 ILE ILE A . n A 1 126 ILE 126 150 150 ILE ILE A . n A 1 127 VAL 127 151 151 VAL VAL A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 ASP 129 153 153 ASP ASP A . n A 1 130 LEU 130 154 154 LEU LEU A . n A 1 131 ASN 131 155 155 ASN ASN A . n A 1 132 PRO 132 156 156 PRO PRO A . n A 1 133 LEU 133 157 157 LEU LEU A . n A 1 134 HIS 134 158 158 HIS HIS A . n A 1 135 ASP 135 159 159 ASP ASP A . n A 1 136 ILE 136 160 160 ILE ILE A . n A 1 137 MSE 137 161 161 MSE MSE A . n A 1 138 ASP 138 162 162 ASP ASP A . n A 1 139 GLN 139 163 163 GLN GLN A . n A 1 140 GLU 140 164 164 GLU GLU A . n A 1 141 ASP 141 165 165 ASP ASP A . n A 1 142 TYR 142 166 166 TYR TYR A . n A 1 143 LYS 143 167 167 LYS LYS A . n A 1 144 GLU 144 168 168 GLU GLU A . n A 1 145 LYS 145 169 169 LYS LYS A . n A 1 146 TYR 146 170 170 TYR TYR A . n A 1 147 TYR 147 171 171 TYR TYR A . n A 1 148 LYS 148 172 172 LYS LYS A . n A 1 149 ASP 149 173 173 ASP ASP A . n A 1 150 LEU 150 174 174 LEU LEU A . n A 1 151 ILE 151 175 175 ILE ILE A . n A 1 152 THR 152 176 176 THR THR A . n A 1 153 LEU 153 177 177 LEU LEU A . n A 1 154 GLY 154 178 178 GLY GLY A . n A 1 155 LEU 155 179 179 LEU LEU A . n A 1 156 LYS 156 180 180 LYS LYS A . n A 1 157 TYR 157 181 181 TYR TYR A . n A 1 158 SER 158 182 182 SER SER A . n A 1 159 LYS 159 183 183 LYS LYS A . n A 1 160 LEU 160 184 184 LEU LEU A . n A 1 161 LEU 161 185 185 LEU LEU A . n A 1 162 PRO 162 186 186 PRO PRO A . n A 1 163 TRP 163 187 187 TRP TRP A . n A 1 164 GLY 164 188 188 GLY GLY A . n A 1 165 GLY 165 189 189 GLY GLY A . n A 1 166 LYS 166 190 190 LYS LYS A . n A 1 167 LEU 167 191 191 LEU LEU A . n A 1 168 THR 168 192 192 THR THR A . n A 1 169 SER 169 193 193 SER SER A . n A 1 170 GLU 170 194 194 GLU GLU A . n A 1 171 SER 171 195 195 SER SER A . n A 1 172 LEU 172 196 196 LEU LEU A . n A 1 173 ARG 173 197 197 ARG ARG A . n A 1 174 PHE 174 198 198 PHE PHE A . n A 1 175 PHE 175 199 199 PHE PHE A . n A 1 176 SER 176 200 200 SER SER A . n A 1 177 PRO 177 201 201 PRO PRO A . n A 1 178 ILE 178 202 202 ILE ILE A . n A 1 179 VAL 179 203 203 VAL VAL A . n A 1 180 ILE 180 204 204 ILE ILE A . n A 1 181 TRP 181 205 205 TRP TRP A . n A 1 182 THR 182 206 206 THR THR A . n A 1 183 ARG 183 207 207 ARG ARG A . n A 1 184 PHE 184 208 208 PHE PHE A . n A 1 185 SER 185 209 209 SER SER A . n A 1 186 SER 186 210 210 SER SER A . n A 1 187 SER 187 211 211 SER SER A . n A 1 188 PRO 188 212 212 PRO PRO A . n A 1 189 HIS 189 213 213 HIS HIS A . n A 1 190 ASN 190 214 214 ASN ASN A . n A 1 191 HIS 191 215 215 HIS HIS A . n A 1 192 SER 192 216 216 SER SER A . n A 1 193 VAL 193 217 217 VAL VAL A . n A 1 194 LEU 194 218 218 LEU LEU A . n A 1 195 PHE 195 219 219 PHE PHE A . n A 1 196 SER 196 220 220 SER SER A . n A 1 197 ALA 197 221 221 ALA ALA A . n A 1 198 PHE 198 222 222 PHE PHE A . n A 1 199 LYS 199 223 223 LYS LYS A . n A 1 200 ASP 200 224 224 ASP ASP A . n A 1 201 TYR 201 225 225 TYR TYR A . n A 1 202 TYR 202 226 226 TYR TYR A . n A 1 203 GLN 203 227 227 GLN GLN A . n A 1 204 ALA 204 228 228 ALA ALA A . n A 1 205 TRP 205 229 229 TRP TRP A . n A 1 206 LEU 206 230 230 LEU LEU A . n A 1 207 GLY 207 231 231 GLY GLY A . n A 1 208 LEU 208 232 232 LEU LEU A . n A 1 209 MSE 209 233 233 MSE MSE A . n A 1 210 ASP 210 234 234 ASP ASP A . n A 1 211 ARG 211 235 235 ARG ARG A . n A 1 212 SER 212 236 236 SER SER A . n A 1 213 GLU 213 237 237 GLU GLU A . n A 1 214 GLY 214 238 238 GLY GLY A . n A 1 215 GLU 215 239 239 GLU GLU A . n A 1 216 THR 216 240 240 THR THR A . n A 1 217 ASP 217 241 241 ASP ASP A . n A 1 218 ALA 218 242 242 ALA ALA A . n A 1 219 SER 219 243 243 SER SER A . n A 1 220 GLN 220 244 244 GLN GLN A . n A 1 221 ILE 221 245 245 ILE ILE A . n A 1 222 ALA 222 246 246 ALA ALA A . n A 1 223 CYS 223 247 247 CYS CYS A . n A 1 224 ASN 224 248 248 ASN ASN A . n A 1 225 CYS 225 249 249 CYS CYS A . n A 1 226 GLU 226 250 250 GLU GLU A . n A 1 227 ALA 227 251 251 ALA ALA A . n A 1 228 GLN 228 252 252 GLN GLN A . n A 1 229 HIS 229 253 253 HIS HIS A . n A 1 230 ARG 230 254 254 ARG ARG A . n A 1 231 TYR 231 255 255 TYR TYR A . n A 1 232 LEU 232 256 256 LEU LEU A . n A 1 233 THR 233 257 257 THR THR A . n A 1 234 TRP 234 258 258 TRP TRP A . n A 1 235 ARG 235 259 259 ARG ARG A . n A 1 236 SER 236 260 260 SER SER A . n A 1 237 GLU 237 261 261 GLU GLU A . n A 1 238 LYS 238 262 262 LYS LYS A . n A 1 239 ASP 239 263 263 ASP ASP A . n A 1 240 PRO 240 264 264 PRO PRO A . n A 1 241 GLY 241 265 265 GLY GLY A . n A 1 242 HIS 242 266 266 HIS HIS A . n A 1 243 GLY 243 267 267 GLY GLY A . n A 1 244 VAL 244 268 268 VAL VAL A . n A 1 245 LEU 245 269 269 LEU LEU A . n A 1 246 LYS 246 270 270 LYS LYS A . n A 1 247 ARG 247 271 271 ARG ARG A . n A 1 248 LEU 248 272 272 LEU LEU A . n A 1 249 ILE 249 273 273 ILE ILE A . n A 1 250 GLY 250 274 274 GLY GLY A . n A 1 251 GLU 251 275 275 GLU GLU A . n A 1 252 ASP 252 276 276 ASP ASP A . n A 1 253 LEU 253 277 277 LEU LEU A . n A 1 254 ALA 254 278 278 ALA ALA A . n A 1 255 LYS 255 279 279 LYS LYS A . n A 1 256 ASP 256 280 280 ASP ASP A . n A 1 257 VAL 257 281 281 VAL VAL A . n A 1 258 ILE 258 282 282 ILE ILE A . n A 1 259 THR 259 283 283 THR THR A . n A 1 260 LYS 260 284 284 LYS LYS A . n A 1 261 PHE 261 285 285 PHE PHE A . n A 1 262 LEU 262 286 286 LEU LEU A . n A 1 263 PHE 263 287 287 PHE PHE A . n A 1 264 ASN 264 288 288 ASN ASN A . n A 1 265 GLY 265 289 289 GLY GLY A . n A 1 266 VAL 266 290 290 VAL VAL A . n A 1 267 ASN 267 291 291 ASN ASN A . n A 1 268 GLU 268 292 292 GLU GLU A . n A 1 269 LEU 269 293 293 LEU LEU A . n A 1 270 GLY 270 294 294 GLY GLY A . n A 1 271 ASN 271 295 295 ASN ASN A . n A 1 272 LYS 272 296 296 LYS LYS A . n A 1 273 THR 273 297 297 THR THR A . n A 1 274 PHE 274 298 298 PHE PHE A . n A 1 275 LEU 275 299 299 LEU LEU A . n A 1 276 ASP 276 300 300 ASP ASP A . n A 1 277 TYR 277 301 301 TYR TYR A . n A 1 278 PHE 278 302 302 PHE PHE A . n A 1 279 PRO 279 303 303 PRO PRO A . n A 1 280 GLU 280 304 304 GLU GLU A . n A 1 281 TYR 281 305 305 TYR TYR A . n A 1 282 ARG 282 306 306 ARG ARG A . n A 1 283 CYS 283 307 307 CYS CYS A . n A 1 284 GLU 284 308 308 GLU GLU A . n A 1 285 ASP 285 309 309 ASP ASP A . n A 1 286 GLY 286 310 310 GLY GLY A . n A 1 287 LYS 287 311 311 LYS LYS A . n A 1 288 VAL 288 312 312 VAL VAL A . n A 1 289 ASN 289 313 313 ASN ASN A . n A 1 290 GLU 290 314 314 GLU GLU A . n A 1 291 LYS 291 315 315 LYS LYS A . n A 1 292 ARG 292 316 316 ARG ARG A . n A 1 293 SER 293 317 317 SER SER A . n A 1 294 MSE 294 318 318 MSE MSE A . n A 1 295 ILE 295 319 319 ILE ILE A . n A 1 296 GLY 296 320 320 GLY GLY A . n A 1 297 LYS 297 321 321 LYS LYS A . n A 1 298 SER 298 322 322 SER SER A . n A 1 299 PHE 299 323 323 PHE PHE A . n A 1 300 GLU 300 324 324 GLU GLU A . n A 1 301 ASN 301 325 325 ASN ASN A . n A 1 302 ARG 302 326 326 ARG ARG A . n A 1 303 PRO 303 327 327 PRO PRO A . n A 1 304 TRP 304 328 328 TRP TRP A . n A 1 305 ASN 305 329 329 ASN ASN A . n A 1 306 ALA 306 330 330 ALA ALA A . n A 1 307 ARG 307 331 331 ARG ARG A . n A 1 308 GLY 308 332 332 GLY GLY A . n A 1 309 GLU 309 333 333 GLU GLU A . n A 1 310 PHE 310 334 334 PHE PHE A . n A 1 311 ILE 311 335 335 ILE ILE A . n A 1 312 GLY 312 336 336 GLY GLY A . n A 1 313 ASP 313 337 ? ? ? A . n A 1 314 ARG 314 338 ? ? ? A . n A 1 315 VAL 315 339 ? ? ? A . n A 1 316 GLU 316 340 ? ? ? A . n A 1 317 ILE 317 341 ? ? ? A . n A 1 318 VAL 318 342 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BLA 1 401 401 BLA BLA A . C 3 MG 1 402 1 MG MG A . D 3 MG 1 403 2 MG MG A . E 4 CL 1 404 1 CL CL A . F 5 HOH 1 501 159 HOH HOH A . F 5 HOH 2 502 168 HOH HOH A . F 5 HOH 3 503 47 HOH HOH A . F 5 HOH 4 504 40 HOH HOH A . F 5 HOH 5 505 166 HOH HOH A . F 5 HOH 6 506 172 HOH HOH A . F 5 HOH 7 507 56 HOH HOH A . F 5 HOH 8 508 131 HOH HOH A . F 5 HOH 9 509 133 HOH HOH A . F 5 HOH 10 510 110 HOH HOH A . F 5 HOH 11 511 53 HOH HOH A . F 5 HOH 12 512 6 HOH HOH A . F 5 HOH 13 513 28 HOH HOH A . F 5 HOH 14 514 78 HOH HOH A . F 5 HOH 15 515 67 HOH HOH A . F 5 HOH 16 516 160 HOH HOH A . F 5 HOH 17 517 2 HOH HOH A . F 5 HOH 18 518 169 HOH HOH A . F 5 HOH 19 519 32 HOH HOH A . F 5 HOH 20 520 121 HOH HOH A . F 5 HOH 21 521 151 HOH HOH A . F 5 HOH 22 522 25 HOH HOH A . F 5 HOH 23 523 5 HOH HOH A . F 5 HOH 24 524 115 HOH HOH A . F 5 HOH 25 525 61 HOH HOH A . F 5 HOH 26 526 13 HOH HOH A . F 5 HOH 27 527 17 HOH HOH A . F 5 HOH 28 528 26 HOH HOH A . F 5 HOH 29 529 57 HOH HOH A . F 5 HOH 30 530 19 HOH HOH A . F 5 HOH 31 531 116 HOH HOH A . F 5 HOH 32 532 74 HOH HOH A . F 5 HOH 33 533 3 HOH HOH A . F 5 HOH 34 534 38 HOH HOH A . F 5 HOH 35 535 23 HOH HOH A . F 5 HOH 36 536 30 HOH HOH A . F 5 HOH 37 537 176 HOH HOH A . F 5 HOH 38 538 21 HOH HOH A . F 5 HOH 39 539 43 HOH HOH A . F 5 HOH 40 540 81 HOH HOH A . F 5 HOH 41 541 140 HOH HOH A . F 5 HOH 42 542 7 HOH HOH A . F 5 HOH 43 543 66 HOH HOH A . F 5 HOH 44 544 42 HOH HOH A . F 5 HOH 45 545 29 HOH HOH A . F 5 HOH 46 546 98 HOH HOH A . F 5 HOH 47 547 51 HOH HOH A . F 5 HOH 48 548 8 HOH HOH A . F 5 HOH 49 549 79 HOH HOH A . F 5 HOH 50 550 62 HOH HOH A . F 5 HOH 51 551 16 HOH HOH A . F 5 HOH 52 552 36 HOH HOH A . F 5 HOH 53 553 158 HOH HOH A . F 5 HOH 54 554 107 HOH HOH A . F 5 HOH 55 555 90 HOH HOH A . F 5 HOH 56 556 105 HOH HOH A . F 5 HOH 57 557 175 HOH HOH A . F 5 HOH 58 558 1 HOH HOH A . F 5 HOH 59 559 15 HOH HOH A . F 5 HOH 60 560 34 HOH HOH A . F 5 HOH 61 561 59 HOH HOH A . F 5 HOH 62 562 52 HOH HOH A . F 5 HOH 63 563 4 HOH HOH A . F 5 HOH 64 564 20 HOH HOH A . F 5 HOH 65 565 48 HOH HOH A . F 5 HOH 66 566 155 HOH HOH A . F 5 HOH 67 567 76 HOH HOH A . F 5 HOH 68 568 119 HOH HOH A . F 5 HOH 69 569 167 HOH HOH A . F 5 HOH 70 570 132 HOH HOH A . F 5 HOH 71 571 108 HOH HOH A . F 5 HOH 72 572 99 HOH HOH A . F 5 HOH 73 573 97 HOH HOH A . F 5 HOH 74 574 10 HOH HOH A . F 5 HOH 75 575 11 HOH HOH A . F 5 HOH 76 576 64 HOH HOH A . F 5 HOH 77 577 18 HOH HOH A . F 5 HOH 78 578 174 HOH HOH A . F 5 HOH 79 579 14 HOH HOH A . F 5 HOH 80 580 157 HOH HOH A . F 5 HOH 81 581 135 HOH HOH A . F 5 HOH 82 582 147 HOH HOH A . F 5 HOH 83 583 72 HOH HOH A . F 5 HOH 84 584 137 HOH HOH A . F 5 HOH 85 585 37 HOH HOH A . F 5 HOH 86 586 70 HOH HOH A . F 5 HOH 87 587 162 HOH HOH A . F 5 HOH 88 588 92 HOH HOH A . F 5 HOH 89 589 106 HOH HOH A . F 5 HOH 90 590 46 HOH HOH A . F 5 HOH 91 591 65 HOH HOH A . F 5 HOH 92 592 95 HOH HOH A . F 5 HOH 93 593 111 HOH HOH A . F 5 HOH 94 594 126 HOH HOH A . F 5 HOH 95 595 77 HOH HOH A . F 5 HOH 96 596 125 HOH HOH A . F 5 HOH 97 597 49 HOH HOH A . F 5 HOH 98 598 63 HOH HOH A . F 5 HOH 99 599 129 HOH HOH A . F 5 HOH 100 600 75 HOH HOH A . F 5 HOH 101 601 33 HOH HOH A . F 5 HOH 102 602 134 HOH HOH A . F 5 HOH 103 603 104 HOH HOH A . F 5 HOH 104 604 165 HOH HOH A . F 5 HOH 105 605 68 HOH HOH A . F 5 HOH 106 606 102 HOH HOH A . F 5 HOH 107 607 148 HOH HOH A . F 5 HOH 108 608 82 HOH HOH A . F 5 HOH 109 609 22 HOH HOH A . F 5 HOH 110 610 123 HOH HOH A . F 5 HOH 111 611 173 HOH HOH A . F 5 HOH 112 612 54 HOH HOH A . F 5 HOH 113 613 45 HOH HOH A . F 5 HOH 114 614 12 HOH HOH A . F 5 HOH 115 615 80 HOH HOH A . F 5 HOH 116 616 100 HOH HOH A . F 5 HOH 117 617 27 HOH HOH A . F 5 HOH 118 618 118 HOH HOH A . F 5 HOH 119 619 71 HOH HOH A . F 5 HOH 120 620 103 HOH HOH A . F 5 HOH 121 621 149 HOH HOH A . F 5 HOH 122 622 35 HOH HOH A . F 5 HOH 123 623 39 HOH HOH A . F 5 HOH 124 624 143 HOH HOH A . F 5 HOH 125 625 109 HOH HOH A . F 5 HOH 126 626 144 HOH HOH A . F 5 HOH 127 627 142 HOH HOH A . F 5 HOH 128 628 41 HOH HOH A . F 5 HOH 129 629 9 HOH HOH A . F 5 HOH 130 630 73 HOH HOH A . F 5 HOH 131 631 91 HOH HOH A . F 5 HOH 132 632 136 HOH HOH A . F 5 HOH 133 633 154 HOH HOH A . F 5 HOH 134 634 58 HOH HOH A . F 5 HOH 135 635 60 HOH HOH A . F 5 HOH 136 636 138 HOH HOH A . F 5 HOH 137 637 83 HOH HOH A . F 5 HOH 138 638 24 HOH HOH A . F 5 HOH 139 639 44 HOH HOH A . F 5 HOH 140 640 55 HOH HOH A . F 5 HOH 141 641 139 HOH HOH A . F 5 HOH 142 642 156 HOH HOH A . F 5 HOH 143 643 141 HOH HOH A . F 5 HOH 144 644 122 HOH HOH A . F 5 HOH 145 645 69 HOH HOH A . F 5 HOH 146 646 113 HOH HOH A . F 5 HOH 147 647 87 HOH HOH A . F 5 HOH 148 648 171 HOH HOH A . F 5 HOH 149 649 145 HOH HOH A . F 5 HOH 150 650 146 HOH HOH A . F 5 HOH 151 651 127 HOH HOH A . F 5 HOH 152 652 84 HOH HOH A . F 5 HOH 153 653 150 HOH HOH A . F 5 HOH 154 654 170 HOH HOH A . F 5 HOH 155 655 114 HOH HOH A . F 5 HOH 156 656 130 HOH HOH A . F 5 HOH 157 657 163 HOH HOH A . F 5 HOH 158 658 101 HOH HOH A . F 5 HOH 159 659 93 HOH HOH A . F 5 HOH 160 660 86 HOH HOH A . F 5 HOH 161 661 177 HOH HOH A . F 5 HOH 162 662 88 HOH HOH A . F 5 HOH 163 663 94 HOH HOH A . F 5 HOH 164 664 161 HOH HOH A . F 5 HOH 165 665 152 HOH HOH A . F 5 HOH 166 666 153 HOH HOH A . F 5 HOH 167 667 50 HOH HOH A . F 5 HOH 168 668 120 HOH HOH A . F 5 HOH 169 669 89 HOH HOH A . F 5 HOH 170 670 31 HOH HOH A . F 5 HOH 171 671 164 HOH HOH A . F 5 HOH 172 672 128 HOH HOH A . F 5 HOH 173 673 96 HOH HOH A . F 5 HOH 174 674 117 HOH HOH A . F 5 HOH 175 675 85 HOH HOH A . F 5 HOH 176 676 124 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 65 A MSE 89 ? MET 'modified residue' 2 A MSE 73 A MSE 97 ? MET 'modified residue' 3 A MSE 95 A MSE 119 ? MET 'modified residue' 4 A MSE 123 A MSE 147 ? MET 'modified residue' 5 A MSE 137 A MSE 161 ? MET 'modified residue' 6 A MSE 209 A MSE 233 ? MET 'modified residue' 7 A MSE 294 A MSE 318 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1280 ? 1 MORE -17 ? 1 'SSA (A^2)' 12900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 67 ? A ASP 91 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 571 ? 1_555 95.9 ? 2 OD1 ? A ASP 67 ? A ASP 91 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 580 ? 1_555 95.5 ? 3 O ? F HOH . ? A HOH 571 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 580 ? 1_555 92.2 ? 4 OD1 ? A ASP 67 ? A ASP 91 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 90.7 ? 5 O ? F HOH . ? A HOH 571 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 173.2 ? 6 O ? F HOH . ? A HOH 580 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 85.5 ? 7 OD1 ? A ASP 67 ? A ASP 91 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 510 ? 5_645 85.0 ? 8 O ? F HOH . ? A HOH 571 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 510 ? 5_645 88.3 ? 9 O ? F HOH . ? A HOH 580 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 510 ? 5_645 179.1 ? 10 O ? F HOH . ? A HOH 625 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 510 ? 5_645 93.9 ? 11 OD1 ? A ASP 67 ? A ASP 91 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 554 ? 5_645 167.9 ? 12 O ? F HOH . ? A HOH 571 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 554 ? 5_645 82.1 ? 13 O ? F HOH . ? A HOH 580 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 554 ? 5_645 96.4 ? 14 O ? F HOH . ? A HOH 625 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 554 ? 5_645 91.8 ? 15 O ? F HOH . ? A HOH 510 ? 5_645 MG ? C MG . ? A MG 402 ? 1_555 O ? F HOH . ? A HOH 554 ? 5_645 83.0 ? 16 O ? F HOH . ? A HOH 502 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 OE1 ? A GLU 300 ? A GLU 324 ? 1_555 54.5 ? 17 O ? F HOH . ? A HOH 502 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 648 ? 4_565 116.6 ? 18 OE1 ? A GLU 300 ? A GLU 324 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 648 ? 4_565 108.6 ? 19 O ? F HOH . ? A HOH 502 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 518 ? 4_565 66.7 ? 20 OE1 ? A GLU 300 ? A GLU 324 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 518 ? 4_565 72.8 ? 21 O ? F HOH . ? A HOH 648 ? 4_565 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 518 ? 4_565 176.7 ? 22 O ? F HOH . ? A HOH 502 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 654 ? 4_565 163.2 ? 23 OE1 ? A GLU 300 ? A GLU 324 ? 1_555 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 654 ? 4_565 108.9 ? 24 O ? F HOH . ? A HOH 648 ? 4_565 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 654 ? 4_565 63.4 ? 25 O ? F HOH . ? A HOH 518 ? 4_565 MG ? D MG . ? A MG 403 ? 1_555 O ? F HOH . ? A HOH 654 ? 4_565 113.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-12-18 2 'Structure model' 1 1 2019-12-25 3 'Structure model' 1 2 2020-01-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation.year' 9 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 64.8654 18.7846 77.8494 0.3571 0.2373 0.3198 -0.0469 -0.1061 0.0674 1.4053 2.1778 3.6056 1.2621 0.9715 2.1731 0.3252 -0.0994 -0.2296 -0.1172 -0.3777 -0.1385 0.3660 0.5580 0.0068 'X-RAY DIFFRACTION' 2 ? refined 63.9993 22.5820 72.0002 0.2713 0.2175 0.2347 -0.0393 -0.0862 -0.0172 6.2971 3.9862 2.0075 0.9207 1.4068 -2.3479 0.2760 -0.1890 -0.0551 0.0350 -0.0549 -0.4708 0.0118 0.5064 0.2398 'X-RAY DIFFRACTION' 3 ? refined 62.7688 36.9396 72.3283 0.2309 0.1423 0.2225 -0.0450 0.0064 -0.0293 2.1012 1.2601 3.2572 0.6444 0.3245 0.1655 0.1793 -0.1163 -0.0794 -0.1259 0.1212 0.0844 0.1374 -0.2879 0.1467 'X-RAY DIFFRACTION' 4 ? refined 54.7156 18.0374 63.9130 0.1659 0.1473 0.2240 -0.0085 -0.0685 0.0252 9.1280 5.7010 8.1616 -0.3113 -2.2999 3.4182 0.0039 -0.1342 0.1078 0.3505 -0.2834 0.3647 -0.1669 0.2405 -0.4545 'X-RAY DIFFRACTION' 5 ? refined 51.0694 35.8555 63.3286 0.2299 0.1028 0.2458 0.0130 0.0230 -0.0559 3.5319 2.1938 2.7286 0.6783 0.5451 -0.4562 0.1478 -0.0704 -0.0346 0.0338 0.1537 0.2844 -0.0444 -0.0887 -0.1150 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 56 A 104 ;chain 'A' and (resid 56 through 104 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 105 A 128 ;chain 'A' and (resid 105 through 128 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 129 A 262 ;chain 'A' and (resid 129 through 262 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 263 A 284 ;chain 'A' and (resid 263 through 284 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 285 A 336 ;chain 'A' and (resid 285 through 336 ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14-3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 6KMD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 632 ? ? O A HOH 650 ? ? 2.14 2 1 O A HOH 516 ? ? O A HOH 664 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 72 ? ? -166.85 -166.48 2 1 SER A 84 ? ? -139.75 -53.69 3 1 SER A 116 ? ? -94.98 33.09 4 1 ASP A 117 ? ? -148.88 25.28 5 1 ASP A 133 ? ? -77.82 32.91 6 1 PHE A 285 ? ? -118.72 -70.18 7 1 ASN A 288 ? ? -39.19 129.01 8 1 PHE A 323 ? ? 62.11 68.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 82 ? CG ? A LYS 58 CG 2 1 Y 1 A LYS 82 ? CD ? A LYS 58 CD 3 1 Y 1 A LYS 82 ? CE ? A LYS 58 CE 4 1 Y 1 A LYS 82 ? NZ ? A LYS 58 NZ 5 1 Y 1 A GLU 114 ? CG ? A GLU 90 CG 6 1 Y 1 A GLU 114 ? CD ? A GLU 90 CD 7 1 Y 1 A GLU 114 ? OE1 ? A GLU 90 OE1 8 1 Y 1 A GLU 114 ? OE2 ? A GLU 90 OE2 9 1 Y 1 A ASP 117 ? CG ? A ASP 93 CG 10 1 Y 1 A ASP 117 ? OD1 ? A ASP 93 OD1 11 1 Y 1 A ASP 117 ? OD2 ? A ASP 93 OD2 12 1 Y 1 A LYS 146 ? CG ? A LYS 122 CG 13 1 Y 1 A LYS 146 ? CD ? A LYS 122 CD 14 1 Y 1 A LYS 146 ? CE ? A LYS 122 CE 15 1 Y 1 A LYS 146 ? NZ ? A LYS 122 NZ 16 1 Y 1 A ASP 162 ? CG ? A ASP 138 CG 17 1 Y 1 A ASP 162 ? OD1 ? A ASP 138 OD1 18 1 Y 1 A ASP 162 ? OD2 ? A ASP 138 OD2 19 1 Y 1 A GLN 163 ? CG ? A GLN 139 CG 20 1 Y 1 A GLN 163 ? CD ? A GLN 139 CD 21 1 Y 1 A GLN 163 ? OE1 ? A GLN 139 OE1 22 1 Y 1 A GLN 163 ? NE2 ? A GLN 139 NE2 23 1 Y 1 A GLU 164 ? CG ? A GLU 140 CG 24 1 Y 1 A GLU 164 ? CD ? A GLU 140 CD 25 1 Y 1 A GLU 164 ? OE1 ? A GLU 140 OE1 26 1 Y 1 A GLU 164 ? OE2 ? A GLU 140 OE2 27 1 Y 1 A LYS 172 ? CG ? A LYS 148 CG 28 1 Y 1 A LYS 172 ? CD ? A LYS 148 CD 29 1 Y 1 A LYS 172 ? CE ? A LYS 148 CE 30 1 Y 1 A LYS 172 ? NZ ? A LYS 148 NZ 31 1 Y 1 A LYS 279 ? CG ? A LYS 255 CG 32 1 Y 1 A LYS 279 ? CD ? A LYS 255 CD 33 1 Y 1 A LYS 279 ? CE ? A LYS 255 CE 34 1 Y 1 A LYS 279 ? NZ ? A LYS 255 NZ 35 1 Y 1 A GLU 308 ? CG ? A GLU 284 CG 36 1 Y 1 A GLU 308 ? CD ? A GLU 284 CD 37 1 Y 1 A GLU 308 ? OE1 ? A GLU 284 OE1 38 1 Y 1 A GLU 308 ? OE2 ? A GLU 284 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 25 ? A MSE 1 2 1 Y 1 A GLY 26 ? A GLY 2 3 1 Y 1 A SER 27 ? A SER 3 4 1 Y 1 A SER 28 ? A SER 4 5 1 Y 1 A HIS 29 ? A HIS 5 6 1 Y 1 A HIS 30 ? A HIS 6 7 1 Y 1 A HIS 31 ? A HIS 7 8 1 Y 1 A HIS 32 ? A HIS 8 9 1 Y 1 A HIS 33 ? A HIS 9 10 1 Y 1 A HIS 34 ? A HIS 10 11 1 Y 1 A SER 35 ? A SER 11 12 1 Y 1 A SER 36 ? A SER 12 13 1 Y 1 A GLY 37 ? A GLY 13 14 1 Y 1 A LEU 38 ? A LEU 14 15 1 Y 1 A VAL 39 ? A VAL 15 16 1 Y 1 A PRO 40 ? A PRO 16 17 1 Y 1 A ARG 41 ? A ARG 17 18 1 Y 1 A GLY 42 ? A GLY 18 19 1 Y 1 A SER 43 ? A SER 19 20 1 Y 1 A HIS 44 ? A HIS 20 21 1 Y 1 A MSE 45 ? A MSE 21 22 1 Y 1 A SER 46 ? A SER 22 23 1 Y 1 A TYR 47 ? A TYR 23 24 1 Y 1 A THR 48 ? A THR 24 25 1 Y 1 A GLU 49 ? A GLU 25 26 1 Y 1 A ASN 50 ? A ASN 26 27 1 Y 1 A GLU 51 ? A GLU 27 28 1 Y 1 A SER 52 ? A SER 28 29 1 Y 1 A SER 53 ? A SER 29 30 1 Y 1 A GLY 54 ? A GLY 30 31 1 Y 1 A VAL 55 ? A VAL 31 32 1 Y 1 A ASP 337 ? A ASP 313 33 1 Y 1 A ARG 338 ? A ARG 314 34 1 Y 1 A VAL 339 ? A VAL 315 35 1 Y 1 A GLU 340 ? A GLU 316 36 1 Y 1 A ILE 341 ? A ILE 317 37 1 Y 1 A VAL 342 ? A VAL 318 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 19K06515 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BLA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BLA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BILIVERDINE IX ALPHA' BLA 3 'MAGNESIUM ION' MG 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system tetragonal _space_group.name_H-M_alt 'P 43 21 2' _space_group.IT_number 96 _space_group.name_Hall 'P 4nw 2abw' _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+3/4 3 y+1/2,-x+1/2,z+1/4 4 x+1/2,-y+1/2,-z+1/4 5 -x+1/2,y+1/2,-z+3/4 6 -x,-y,z+1/2 7 y,x,-z 8 -y,-x,-z+1/2 #