HEADER DNA BINDING PROTEIN 08-AUG-19 6KO9 TITLE CRYSTAL STRUCTURE OF THE GEFITINIB INTERMEDIATE 1 BOUND RAMR TITLE 2 DETERMINED WITH XTALAB SYNERGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. 14028S; SOURCE 4 ORGANISM_TAXID: 588858; SOURCE 5 STRAIN: 14028S / SGSC 2262; SOURCE 6 GENE: STM14_0676; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET DUET KEYWDS MULTISITE BINDING POCKET, HTH-MOTIF, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MATSUMOTO,R.NAKASHIMA,A.YAMANO,K.NISHINO REVDAT 2 22-NOV-23 6KO9 1 REMARK REVDAT 1 09-OCT-19 6KO9 0 JRNL AUTH T.MATSUMOTO,R.NAKASHIMA,A.YAMANO,K.NISHINO JRNL TITL DEVELOPMENT OF A STRUCTURE DETERMINATION METHOD USING A JRNL TITL 2 MULTIDRUG-RESISTANCE REGULATOR PROTEIN AS A FRAMEWORK. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 518 402 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31431261 JRNL DOI 10.1016/J.BBRC.2019.08.070 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 38659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.4610 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : -0.64000 REMARK 3 B23 (A**2) : -1.17000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.364 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6068 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5636 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8190 ; 1.566 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12948 ; 1.321 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 732 ; 6.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;34.430 ;20.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1060 ;21.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;22.584 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6800 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1420 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6KO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : MULTI-LAYER MIRROR OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIC-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 18.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 192 REMARK 465 GLN A 193 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 192 REMARK 465 GLN B 193 REMARK 465 MET C 0 REMARK 465 VAL C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 3 REMARK 465 PRO C 4 REMARK 465 LYS C 5 REMARK 465 SER C 6 REMARK 465 GLU C 7 REMARK 465 GLU C 192 REMARK 465 GLN C 193 REMARK 465 MET D 0 REMARK 465 VAL D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 GLU D 7 REMARK 465 GLU D 192 REMARK 465 GLN D 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 175 O HOH C 301 1.61 REMARK 500 O HOH A 312 O HOH A 383 1.65 REMARK 500 NH1 ARG C 107 OE2 GLU C 160 1.69 REMARK 500 O HOH B 303 O HOH B 347 1.70 REMARK 500 OE1 GLU B 182 O HOH B 301 1.70 REMARK 500 O HOH B 375 O HOH B 428 1.75 REMARK 500 O VAL C 141 OG SER C 144 1.76 REMARK 500 O MET D 72 O HOH D 301 1.82 REMARK 500 O HOH D 302 O HOH D 379 1.88 REMARK 500 O HOH D 401 O HOH D 447 1.92 REMARK 500 CL1 XZ1 C 201 O HOH C 438 1.92 REMARK 500 OH TYR A 92 CD2 HIS A 103 1.95 REMARK 500 O HOH D 367 O HOH D 413 1.97 REMARK 500 O GLN B 108 O HOH B 302 1.98 REMARK 500 O HOH C 411 O HOH C 450 1.99 REMARK 500 CD ARG A 190 O HOH A 359 1.99 REMARK 500 NZ LYS B 63 O HOH B 303 2.02 REMARK 500 OH TYR A 92 NE2 HIS A 103 2.03 REMARK 500 SG CYS B 67 O HOH B 436 2.05 REMARK 500 O HOH B 357 O HOH B 380 2.07 REMARK 500 O HOH A 319 O HOH A 333 2.07 REMARK 500 O HOH A 356 O HOH A 416 2.08 REMARK 500 NH1 ARG A 107 OE1 GLU A 160 2.10 REMARK 500 O HOH B 376 O HOH B 423 2.11 REMARK 500 CZ2 TRP C 185 O HOH C 360 2.12 REMARK 500 OE2 GLU A 73 O HOH A 301 2.12 REMARK 500 CG1 ILE D 93 O HOH D 371 2.14 REMARK 500 O HOH B 336 O HOH B 340 2.14 REMARK 500 CH2 TRP C 185 O HOH C 360 2.14 REMARK 500 CE LYS B 82 O HOH B 398 2.15 REMARK 500 OE2 GLU D 160 O HOH D 302 2.15 REMARK 500 O ARG B 35 O HOH B 304 2.15 REMARK 500 O HOH A 324 O HOH A 375 2.16 REMARK 500 O HOH A 378 O HOH A 429 2.17 REMARK 500 OH TYR C 92 O HOH C 302 2.18 REMARK 500 CD2 PHE B 165 O HOH B 359 2.19 REMARK 500 O HOH D 314 O HOH D 339 2.19 REMARK 500 O HOH C 316 O HOH C 379 2.19 REMARK 500 NH2 ARG C 136 O HOH C 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 79 OD2 ASP C 145 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 111 56.47 -104.88 REMARK 500 LEU A 139 132.93 -38.42 REMARK 500 ALA B 27 3.20 -67.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 448 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 449 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A 450 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 460 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH B 462 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH C 468 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH C 469 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH C 470 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH C 471 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH C 472 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH C 473 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH C 474 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH C 475 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH D 469 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D 470 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH D 471 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH D 472 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH D 473 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH D 474 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH D 475 DISTANCE = 8.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XZ1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XZ1 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XZ1 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XZ1 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 DBREF1 6KO9 A 2 193 UNP A0A0F6AY66_SALT1 DBREF2 6KO9 A A0A0F6AY66 2 193 DBREF1 6KO9 B 2 193 UNP A0A0F6AY66_SALT1 DBREF2 6KO9 B A0A0F6AY66 2 193 DBREF1 6KO9 C 2 193 UNP A0A0F6AY66_SALT1 DBREF2 6KO9 C A0A0F6AY66 2 193 DBREF1 6KO9 D 2 193 UNP A0A0F6AY66_SALT1 DBREF2 6KO9 D A0A0F6AY66 2 193 SEQADV 6KO9 MET A 0 UNP A0A0F6AY6 INITIATING METHIONINE SEQADV 6KO9 VAL A 1 UNP A0A0F6AY6 EXPRESSION TAG SEQADV 6KO9 MET B 0 UNP A0A0F6AY6 INITIATING METHIONINE SEQADV 6KO9 VAL B 1 UNP A0A0F6AY6 EXPRESSION TAG SEQADV 6KO9 MET C 0 UNP A0A0F6AY6 INITIATING METHIONINE SEQADV 6KO9 VAL C 1 UNP A0A0F6AY6 EXPRESSION TAG SEQADV 6KO9 MET D 0 UNP A0A0F6AY6 INITIATING METHIONINE SEQADV 6KO9 VAL D 1 UNP A0A0F6AY6 EXPRESSION TAG SEQRES 1 A 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 A 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 A 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 A 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 A 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 A 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 A 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 A 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 A 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 A 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 A 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 A 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 A 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 A 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 A 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 B 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 B 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 B 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 B 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 B 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 B 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 B 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 B 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 B 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 B 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 B 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 B 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 B 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 B 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 B 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 C 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 C 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 C 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 C 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 C 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 C 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 C 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 C 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 C 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 C 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 C 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 C 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 C 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 C 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 C 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN SEQRES 1 D 194 MET VAL ALA ARG PRO LYS SER GLU ASP LYS LYS GLN ALA SEQRES 2 D 194 LEU LEU GLU ALA ALA THR GLN ALA ILE ALA GLN SER GLY SEQRES 3 D 194 ILE ALA ALA SER THR ALA VAL ILE ALA ARG ASN ALA GLY SEQRES 4 D 194 VAL ALA GLU GLY THR LEU PHE ARG TYR PHE ALA THR LYS SEQRES 5 D 194 ASP GLU LEU ILE ASN THR LEU TYR LEU HIS LEU LYS GLN SEQRES 6 D 194 ASP LEU CYS GLN SER MET ILE MET GLU LEU ASP ARG SER SEQRES 7 D 194 ILE THR ASP ALA LYS MET MET THR ARG PHE ILE TRP ASN SEQRES 8 D 194 SER TYR ILE SER TRP GLY LEU ASN HIS PRO ALA ARG HIS SEQRES 9 D 194 ARG ALA ILE ARG GLN LEU ALA VAL SER GLU LYS LEU THR SEQRES 10 D 194 LYS GLU THR GLU GLN ARG ALA ASP ASP MET PHE PRO GLU SEQRES 11 D 194 LEU ARG ASP LEU CYS HIS ARG SER VAL LEU MET VAL PHE SEQRES 12 D 194 MET SER ASP GLU TYR ARG ALA PHE GLY ASP GLY LEU PHE SEQRES 13 D 194 LEU ALA LEU ALA GLU THR THR MET ASP PHE ALA ALA ARG SEQRES 14 D 194 ASP PRO ALA ARG ALA GLY GLU TYR ILE ALA LEU GLY PHE SEQRES 15 D 194 GLU ALA MET TRP ARG ALA LEU THR ARG GLU GLU GLN HET XZ1 A 201 22 HET SO4 A 202 5 HET XZ1 B 201 22 HET SO4 B 202 5 HET XZ1 C 201 22 HET SO4 C 202 5 HET XZ1 D 201 22 HET SO4 D 202 5 HET SO4 D 203 5 HETNAM XZ1 4-[(3-CHLORANYL-4-FLUORANYL-PHENYL)AMINO]-7-METHOXY- HETNAM 2 XZ1 QUINAZOLIN-6-OL HETNAM SO4 SULFATE ION FORMUL 5 XZ1 4(C15 H11 CL F N3 O2) FORMUL 6 SO4 5(O4 S 2-) FORMUL 14 HOH *662(H2 O) HELIX 1 AA1 ASP A 8 GLY A 25 1 18 HELIX 2 AA2 ILE A 26 ALA A 28 5 3 HELIX 3 AA3 SER A 29 GLY A 38 1 10 HELIX 4 AA4 ALA A 40 PHE A 48 1 9 HELIX 5 AA5 THR A 50 LEU A 74 1 25 HELIX 6 AA6 ASP A 80 HIS A 99 1 20 HELIX 7 AA7 HIS A 99 VAL A 111 1 13 HELIX 8 AA8 THR A 116 ASP A 125 1 10 HELIX 9 AA9 PHE A 127 VAL A 138 1 12 HELIX 10 AB1 LEU A 139 SER A 144 5 6 HELIX 11 AB2 TYR A 147 ASP A 169 1 23 HELIX 12 AB3 ARG A 172 THR A 189 1 18 HELIX 13 AB4 LYS B 9 GLY B 25 1 17 HELIX 14 AB5 SER B 29 GLY B 38 1 10 HELIX 15 AB6 ALA B 40 PHE B 48 1 9 HELIX 16 AB7 THR B 50 LEU B 74 1 25 HELIX 17 AB8 ASP B 80 HIS B 99 1 20 HELIX 18 AB9 HIS B 99 SER B 112 1 14 HELIX 19 AC1 THR B 116 PHE B 127 1 12 HELIX 20 AC2 PHE B 127 VAL B 138 1 12 HELIX 21 AC3 LEU B 139 SER B 144 1 6 HELIX 22 AC4 TYR B 147 ASP B 169 1 23 HELIX 23 AC5 ARG B 172 THR B 189 1 18 HELIX 24 AC6 LYS C 9 GLY C 25 1 17 HELIX 25 AC7 SER C 29 GLY C 38 1 10 HELIX 26 AC8 ALA C 40 PHE C 48 1 9 HELIX 27 AC9 THR C 50 LEU C 74 1 25 HELIX 28 AD1 ASP C 80 HIS C 99 1 20 HELIX 29 AD2 HIS C 99 SER C 112 1 14 HELIX 30 AD3 THR C 116 ASP C 125 1 10 HELIX 31 AD4 PHE C 127 VAL C 138 1 12 HELIX 32 AD5 LEU C 139 SER C 144 5 6 HELIX 33 AD6 TYR C 147 ASP C 169 1 23 HELIX 34 AD7 ARG C 172 THR C 189 1 18 HELIX 35 AD8 LYS D 9 GLY D 25 1 17 HELIX 36 AD9 SER D 29 ALA D 37 1 9 HELIX 37 AE1 ALA D 40 PHE D 48 1 9 HELIX 38 AE2 THR D 50 GLU D 73 1 24 HELIX 39 AE3 ASP D 80 HIS D 99 1 20 HELIX 40 AE4 HIS D 99 VAL D 111 1 13 HELIX 41 AE5 THR D 116 PHE D 127 1 12 HELIX 42 AE6 PHE D 127 VAL D 138 1 12 HELIX 43 AE7 LEU D 139 SER D 144 5 6 HELIX 44 AE8 TYR D 147 ASP D 169 1 23 HELIX 45 AE9 ARG D 172 THR D 189 1 18 SITE 1 AC1 15 TYR A 59 LYS A 63 LEU A 66 TYR A 92 SITE 2 AC1 15 ILE A 106 ALA A 110 VAL A 138 ASP A 152 SITE 3 AC1 15 PHE A 155 LEU A 156 LEU A 188 HOH A 322 SITE 4 AC1 15 HOH A 326 HOH A 330 HOH A 399 SITE 1 AC2 5 GLN A 19 HIS A 99 PRO A 100 ALA A 101 SITE 2 AC2 5 ARG A 102 SITE 1 AC3 17 LEU B 66 ILE B 88 TYR B 92 ILE B 106 SITE 2 AC3 17 ALA B 110 LEU B 130 VAL B 138 ARG B 148 SITE 3 AC3 17 ASP B 152 PHE B 155 LEU B 156 MET B 184 SITE 4 AC3 17 HOH B 303 HOH B 336 HOH B 347 HOH B 354 SITE 5 AC3 17 HOH B 389 SITE 1 AC4 5 GLN B 19 HIS B 99 PRO B 100 ALA B 101 SITE 2 AC4 5 ARG B 102 SITE 1 AC5 18 TYR C 59 LYS C 63 LEU C 66 TYR C 92 SITE 2 AC5 18 VAL C 138 ASP C 152 PHE C 155 LEU C 156 SITE 3 AC5 18 MET C 184 HOH C 312 HOH C 337 HOH C 346 SITE 4 AC5 18 HOH C 351 HOH C 355 HOH C 365 HOH C 393 SITE 5 AC5 18 HOH C 433 HOH C 438 SITE 1 AC6 6 GLN C 19 HIS C 99 PRO C 100 ALA C 101 SITE 2 AC6 6 ARG C 102 HOH C 341 SITE 1 AC7 16 LEU D 66 ILE D 88 TYR D 92 ILE D 106 SITE 2 AC7 16 ALA D 110 LEU D 130 ASP D 152 PHE D 155 SITE 3 AC7 16 LEU D 188 HOH D 303 HOH D 340 HOH D 357 SITE 4 AC7 16 HOH D 381 HOH D 405 HOH D 426 HOH D 434 SITE 1 AC8 5 ARG A 35 THR D 50 LYS D 51 ASP D 52 SITE 2 AC8 5 HOH D 325 SITE 1 AC9 7 GLN D 19 HIS D 99 PRO D 100 ALA D 101 SITE 2 AC9 7 ARG D 102 HOH D 349 HOH D 395 CRYST1 43.513 54.792 92.224 74.64 81.94 89.98 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022982 -0.000008 -0.003376 0.00000 SCALE2 0.000000 0.018251 -0.005066 0.00000 SCALE3 0.000000 0.000000 0.011365 0.00000