data_6KPO # _entry.id 6KPO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6KPO WWPDB D_1300013441 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6KPO _pdbx_database_status.recvd_initial_deposition_date 2019-08-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Seki, H.' 1 ? 'Arakawa, T.' 2 ? 'Yamada, C.' 3 ? 'Takegawa, K.' 4 ? 'Fushinobu, S.' 5 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Biol.Chem. JBCHA3 0071 1083-351X ? ? 294 ? 17143 17154 ;Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris. ; 2019 ? 10.1074/jbc.RA119.010842 31548313 ? ? ? ? ? ? ? ? UK ? ? 1 'Sci Rep' ? ? 2045-2322 ? ? 8 ? 246 ? ;Characterization of novel endo-beta-N-acetylglucosaminidases from Sphingobacterium species, Beauveria bassiana and Cordyceps militaris that specifically hydrolyze fucose-containing oligosaccharides and human IgG. ; 2018 ? 10.1038/s41598-017-17467-y 29321565 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seki, H.' 1 ? primary 'Huang, Y.' 2 ? primary 'Arakawa, T.' 3 0000-0001-6496-5440 primary 'Yamada, C.' 4 ? primary 'Kinoshita, T.' 5 ? primary 'Iwamoto, S.' 6 ? primary 'Higuchi, Y.' 7 ? primary 'Takegawa, K.' 8 0000-0003-3477-7216 primary 'Fushinobu, S.' 9 0000-0003-1346-6435 1 'Huang, Y.' 10 ? 1 'Higuchi, Y.' 11 ? 1 'Kinoshita, T.' 12 ? 1 'Mitani, A.' 13 ? 1 'Eshima, Y.' 14 ? 1 'Takegawa, K.' 15 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6KPO _cell.details ? _cell.formula_units_Z ? _cell.length_a 105.912 _cell.length_a_esd ? _cell.length_b 105.912 _cell.length_b_esd ? _cell.length_c 62.217 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Chitinase 33402.316 1 ? 'D154N, E156Q' ? ? 2 branched man 'alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose' 367.349 1 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 5 non-polymer syn ASPARAGINE 132.118 1 ? ? ? ? 6 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSSSVCPSDNTHATGAALQKILDYKKGDHQIMAGYFRSWRDTASGTGNKVSMLDLPDCLDIAFVFPEGDETASFWTTLKD TYVPALHGRGIKVVRSVGIAQLINTAWDNTPAGWQGLADALMKTVDDYGLDGLDINVQQSLNANQLKQATGVFNALAKKL GPKSGTGKLLIFDTNMDGTQPLWRNVYPTISYVLIQSYGRSISGLQTTYNSFKSYISSKQYLIGFSFYEENGTNWGDTTT PMTSSRAWQYAKWQPSGATKGGIFSYAIDRDGVAIGDNTLKTTDFTWTRQLIGAMNPHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSSSVCPSDNTHATGAALQKILDYKKGDHQIMAGYFRSWRDTASGTGNKVSMLDLPDCLDIAFVFPEGDETASFWTTLKD TYVPALHGRGIKVVRSVGIAQLINTAWDNTPAGWQGLADALMKTVDDYGLDGLDINVQQSLNANQLKQATGVFNALAKKL GPKSGTGKLLIFDTNMDGTQPLWRNVYPTISYVLIQSYGRSISGLQTTYNSFKSYISSKQYLIGFSFYEENGTNWGDTTT PMTSSRAWQYAKWQPSGATKGGIFSYAIDRDGVAIGDNTLKTTDFTWTRQLIGAMNPHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 SER n 1 4 SER n 1 5 VAL n 1 6 CYS n 1 7 PRO n 1 8 SER n 1 9 ASP n 1 10 ASN n 1 11 THR n 1 12 HIS n 1 13 ALA n 1 14 THR n 1 15 GLY n 1 16 ALA n 1 17 ALA n 1 18 LEU n 1 19 GLN n 1 20 LYS n 1 21 ILE n 1 22 LEU n 1 23 ASP n 1 24 TYR n 1 25 LYS n 1 26 LYS n 1 27 GLY n 1 28 ASP n 1 29 HIS n 1 30 GLN n 1 31 ILE n 1 32 MET n 1 33 ALA n 1 34 GLY n 1 35 TYR n 1 36 PHE n 1 37 ARG n 1 38 SER n 1 39 TRP n 1 40 ARG n 1 41 ASP n 1 42 THR n 1 43 ALA n 1 44 SER n 1 45 GLY n 1 46 THR n 1 47 GLY n 1 48 ASN n 1 49 LYS n 1 50 VAL n 1 51 SER n 1 52 MET n 1 53 LEU n 1 54 ASP n 1 55 LEU n 1 56 PRO n 1 57 ASP n 1 58 CYS n 1 59 LEU n 1 60 ASP n 1 61 ILE n 1 62 ALA n 1 63 PHE n 1 64 VAL n 1 65 PHE n 1 66 PRO n 1 67 GLU n 1 68 GLY n 1 69 ASP n 1 70 GLU n 1 71 THR n 1 72 ALA n 1 73 SER n 1 74 PHE n 1 75 TRP n 1 76 THR n 1 77 THR n 1 78 LEU n 1 79 LYS n 1 80 ASP n 1 81 THR n 1 82 TYR n 1 83 VAL n 1 84 PRO n 1 85 ALA n 1 86 LEU n 1 87 HIS n 1 88 GLY n 1 89 ARG n 1 90 GLY n 1 91 ILE n 1 92 LYS n 1 93 VAL n 1 94 VAL n 1 95 ARG n 1 96 SER n 1 97 VAL n 1 98 GLY n 1 99 ILE n 1 100 ALA n 1 101 GLN n 1 102 LEU n 1 103 ILE n 1 104 ASN n 1 105 THR n 1 106 ALA n 1 107 TRP n 1 108 ASP n 1 109 ASN n 1 110 THR n 1 111 PRO n 1 112 ALA n 1 113 GLY n 1 114 TRP n 1 115 GLN n 1 116 GLY n 1 117 LEU n 1 118 ALA n 1 119 ASP n 1 120 ALA n 1 121 LEU n 1 122 MET n 1 123 LYS n 1 124 THR n 1 125 VAL n 1 126 ASP n 1 127 ASP n 1 128 TYR n 1 129 GLY n 1 130 LEU n 1 131 ASP n 1 132 GLY n 1 133 LEU n 1 134 ASP n 1 135 ILE n 1 136 ASN n 1 137 VAL n 1 138 GLN n 1 139 GLN n 1 140 SER n 1 141 LEU n 1 142 ASN n 1 143 ALA n 1 144 ASN n 1 145 GLN n 1 146 LEU n 1 147 LYS n 1 148 GLN n 1 149 ALA n 1 150 THR n 1 151 GLY n 1 152 VAL n 1 153 PHE n 1 154 ASN n 1 155 ALA n 1 156 LEU n 1 157 ALA n 1 158 LYS n 1 159 LYS n 1 160 LEU n 1 161 GLY n 1 162 PRO n 1 163 LYS n 1 164 SER n 1 165 GLY n 1 166 THR n 1 167 GLY n 1 168 LYS n 1 169 LEU n 1 170 LEU n 1 171 ILE n 1 172 PHE n 1 173 ASP n 1 174 THR n 1 175 ASN n 1 176 MET n 1 177 ASP n 1 178 GLY n 1 179 THR n 1 180 GLN n 1 181 PRO n 1 182 LEU n 1 183 TRP n 1 184 ARG n 1 185 ASN n 1 186 VAL n 1 187 TYR n 1 188 PRO n 1 189 THR n 1 190 ILE n 1 191 SER n 1 192 TYR n 1 193 VAL n 1 194 LEU n 1 195 ILE n 1 196 GLN n 1 197 SER n 1 198 TYR n 1 199 GLY n 1 200 ARG n 1 201 SER n 1 202 ILE n 1 203 SER n 1 204 GLY n 1 205 LEU n 1 206 GLN n 1 207 THR n 1 208 THR n 1 209 TYR n 1 210 ASN n 1 211 SER n 1 212 PHE n 1 213 LYS n 1 214 SER n 1 215 TYR n 1 216 ILE n 1 217 SER n 1 218 SER n 1 219 LYS n 1 220 GLN n 1 221 TYR n 1 222 LEU n 1 223 ILE n 1 224 GLY n 1 225 PHE n 1 226 SER n 1 227 PHE n 1 228 TYR n 1 229 GLU n 1 230 GLU n 1 231 ASN n 1 232 GLY n 1 233 THR n 1 234 ASN n 1 235 TRP n 1 236 GLY n 1 237 ASP n 1 238 THR n 1 239 THR n 1 240 THR n 1 241 PRO n 1 242 MET n 1 243 THR n 1 244 SER n 1 245 SER n 1 246 ARG n 1 247 ALA n 1 248 TRP n 1 249 GLN n 1 250 TYR n 1 251 ALA n 1 252 LYS n 1 253 TRP n 1 254 GLN n 1 255 PRO n 1 256 SER n 1 257 GLY n 1 258 ALA n 1 259 THR n 1 260 LYS n 1 261 GLY n 1 262 GLY n 1 263 ILE n 1 264 PHE n 1 265 SER n 1 266 TYR n 1 267 ALA n 1 268 ILE n 1 269 ASP n 1 270 ARG n 1 271 ASP n 1 272 GLY n 1 273 VAL n 1 274 ALA n 1 275 ILE n 1 276 GLY n 1 277 ASP n 1 278 ASN n 1 279 THR n 1 280 LEU n 1 281 LYS n 1 282 THR n 1 283 THR n 1 284 ASP n 1 285 PHE n 1 286 THR n 1 287 TRP n 1 288 THR n 1 289 ARG n 1 290 GLN n 1 291 LEU n 1 292 ILE n 1 293 GLY n 1 294 ALA n 1 295 MET n 1 296 ASN n 1 297 PRO n 1 298 HIS n 1 299 HIS n 1 300 HIS n 1 301 HIS n 1 302 HIS n 1 303 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 303 _entity_src_gen.gene_src_common_name 'Caterpillar fungus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CCM_08020 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CM01 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cordyceps militaris CM01' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 983644 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'CodonPlus (DE3)-RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-32b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G3JPF7_CORMM _struct_ref.pdbx_db_accession G3JPF7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSSVCPSDNTHATGAALQKILDYKKGDHQIMAGYFRSWRDTASGTGNKVSMLDLPDCLDIAFVFPEGDETASFWTTLKDT YVPALHGRGIKVVRSVGIAQLINTAWDNTPAGWQGLADALMKTVDDYGLDGLDIDVEQSLNANQLKQATGVFNALAKKLG PKSGTGKLLIFDTNMDGTQPLWRNVYPTISYVLIQSYGRSISGLQTTYNSFKSYISSKQYLIGFSFYEENGTNWGDTTTP MTSSRAWQYAKWQPSGATKGGIFSYAIDRDGVAIGDNTLKTTDFTWTRQLIGAMNP ; _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6KPO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 297 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G3JPF7 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 315 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6KPO MET A 1 ? UNP G3JPF7 ? ? 'initiating methionine' 19 1 1 6KPO ASN A 136 ? UNP G3JPF7 ASP 154 'engineered mutation' 154 2 1 6KPO GLN A 138 ? UNP G3JPF7 GLU 156 'engineered mutation' 156 3 1 6KPO HIS A 298 ? UNP G3JPF7 ? ? 'expression tag' 316 4 1 6KPO HIS A 299 ? UNP G3JPF7 ? ? 'expression tag' 317 5 1 6KPO HIS A 300 ? UNP G3JPF7 ? ? 'expression tag' 318 6 1 6KPO HIS A 301 ? UNP G3JPF7 ? ? 'expression tag' 319 7 1 6KPO HIS A 302 ? UNP G3JPF7 ? ? 'expression tag' 320 8 1 6KPO HIS A 303 ? UNP G3JPF7 ? ? 'expression tag' 321 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6KPO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M CHES-NaOH (pH 8.6) and 20 % PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Numerical link type Si(111) double crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6KPO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16268 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.7 _reflns.pdbx_Rmerge_I_obs 0.134 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.974 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.39 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 776 _reflns_shell.percent_possible_all 95.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.554 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.787 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.0400 _refine.aniso_B[1][2] 0.0200 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0400 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.1300 _refine.B_iso_max 125.820 _refine.B_iso_mean 60.7950 _refine.B_iso_min 41.780 _refine.correlation_coeff_Fo_to_Fc 0.9660 _refine.correlation_coeff_Fo_to_Fc_free 0.9320 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6KPO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3600 _refine.ls_d_res_low 45.9000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15471 _refine.ls_number_reflns_R_free 792 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0100 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1877 _refine.ls_R_factor_R_free 0.2357 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1851 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2930 _refine.pdbx_overall_ESU_R_Free 0.2260 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.6660 _refine.overall_SU_ML 0.2090 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3600 _refine_hist.d_res_low 45.9000 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 2446 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 294 _refine_hist.pdbx_B_iso_mean_ligand 88.75 _refine_hist.pdbx_B_iso_mean_solvent 60.05 _refine_hist.pdbx_number_atoms_protein 2274 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.013 2385 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 2140 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.494 1.658 3237 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.265 1.593 4978 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.916 5.000 293 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.077 23.514 111 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.963 15.000 373 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.968 15.000 9 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.059 0.200 321 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 2653 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 496 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.3640 _refine_ls_shell.d_res_low 2.4250 _refine_ls_shell.number_reflns_all 1101 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_R_work 1059 _refine_ls_shell.percent_reflns_obs 93.3100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3270 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3280 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6KPO _struct.title ;Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine-Asn ; _struct.pdbx_descriptor Chitinase _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6KPO _struct_keywords.text 'TIM barrel, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 15 ? GLY A 27 ? GLY A 33 GLY A 45 1 ? 13 HELX_P HELX_P2 AA2 TRP A 39 ? ASP A 41 ? TRP A 57 ASP A 59 5 ? 3 HELX_P HELX_P3 AA3 SER A 51 ? LEU A 55 ? SER A 69 LEU A 73 5 ? 5 HELX_P HELX_P4 AA4 THR A 71 ? THR A 81 ? THR A 89 THR A 99 1 ? 11 HELX_P HELX_P5 AA5 THR A 81 ? ARG A 89 ? THR A 99 ARG A 107 1 ? 9 HELX_P HELX_P6 AA6 ALA A 100 ? ILE A 103 ? ALA A 118 ILE A 121 5 ? 4 HELX_P HELX_P7 AA7 THR A 110 ? ASP A 127 ? THR A 128 ASP A 145 1 ? 18 HELX_P HELX_P8 AA8 ASN A 142 ? ALA A 157 ? ASN A 160 ALA A 175 1 ? 16 HELX_P HELX_P9 AA9 GLN A 180 ? TYR A 187 ? GLN A 198 TYR A 205 1 ? 8 HELX_P HELX_P10 AB1 PRO A 188 ? ILE A 190 ? PRO A 206 ILE A 208 5 ? 3 HELX_P HELX_P11 AB2 SER A 201 ? SER A 203 ? SER A 219 SER A 221 5 ? 3 HELX_P HELX_P12 AB3 GLY A 204 ? SER A 214 ? GLY A 222 SER A 232 1 ? 11 HELX_P HELX_P13 AB4 TYR A 215 ? ILE A 216 ? TYR A 233 ILE A 234 5 ? 2 HELX_P HELX_P14 AB5 SER A 217 ? LYS A 219 ? SER A 235 LYS A 237 5 ? 3 HELX_P HELX_P15 AB6 PRO A 241 ? SER A 244 ? PRO A 259 SER A 262 5 ? 4 HELX_P HELX_P16 AB7 SER A 245 ? TRP A 253 ? SER A 263 TRP A 271 1 ? 9 HELX_P HELX_P17 AB8 ALA A 267 ? ASP A 271 ? ALA A 285 ASP A 289 5 ? 5 HELX_P HELX_P18 AB9 PHE A 285 ? ASN A 296 ? PHE A 303 ASN A 314 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 24 A CYS 76 1_555 ? ? ? ? ? ? ? 2.055 ? ? covale1 covale one ? F ASN . ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 406 B NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale2 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 2 1_555 ? ? ? ? ? ? ? 1.453 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 240 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 258 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 241 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 259 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.07 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA1 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 31 ? ARG A 37 ? ILE A 49 ARG A 55 AA1 2 ILE A 61 ? PHE A 65 ? ILE A 79 PHE A 83 AA1 3 LYS A 92 ? GLY A 98 ? LYS A 110 GLY A 116 AA1 4 GLY A 132 ? VAL A 137 ? GLY A 150 VAL A 155 AA1 5 LEU A 169 ? THR A 174 ? LEU A 187 THR A 192 AA1 6 VAL A 193 ? GLN A 196 ? VAL A 211 GLN A 214 AA1 7 TYR A 221 ? SER A 226 ? TYR A 239 SER A 244 AA1 8 GLY A 262 ? TYR A 266 ? GLY A 280 TYR A 284 AA1 9 ILE A 31 ? ARG A 37 ? ILE A 49 ARG A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 34 ? N GLY A 52 O PHE A 63 ? O PHE A 81 AA1 2 3 N ALA A 62 ? N ALA A 80 O LYS A 92 ? O LYS A 110 AA1 3 4 N ARG A 95 ? N ARG A 113 O ASP A 134 ? O ASP A 152 AA1 4 5 N ILE A 135 ? N ILE A 153 O ILE A 171 ? O ILE A 189 AA1 5 6 N PHE A 172 ? N PHE A 190 O LEU A 194 ? O LEU A 212 AA1 6 7 N ILE A 195 ? N ILE A 213 O LEU A 222 ? O LEU A 240 AA1 7 8 N PHE A 225 ? N PHE A 243 O TYR A 266 ? O TYR A 284 AA1 8 9 O SER A 265 ? O SER A 283 N TYR A 35 ? N TYR A 53 # _atom_sites.entry_id 6KPO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009442 _atom_sites.fract_transf_matrix[1][2] 0.005451 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010902 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016073 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 19 ? ? ? A . n A 1 2 SER 2 20 ? ? ? A . n A 1 3 SER 3 21 ? ? ? A . n A 1 4 SER 4 22 22 SER SER A . n A 1 5 VAL 5 23 23 VAL VAL A . n A 1 6 CYS 6 24 24 CYS CYS A . n A 1 7 PRO 7 25 25 PRO PRO A . n A 1 8 SER 8 26 26 SER SER A . n A 1 9 ASP 9 27 27 ASP ASP A . n A 1 10 ASN 10 28 28 ASN ASN A . n A 1 11 THR 11 29 29 THR THR A . n A 1 12 HIS 12 30 30 HIS HIS A . n A 1 13 ALA 13 31 31 ALA ALA A . n A 1 14 THR 14 32 32 THR THR A . n A 1 15 GLY 15 33 33 GLY GLY A . n A 1 16 ALA 16 34 34 ALA ALA A . n A 1 17 ALA 17 35 35 ALA ALA A . n A 1 18 LEU 18 36 36 LEU LEU A . n A 1 19 GLN 19 37 37 GLN GLN A . n A 1 20 LYS 20 38 38 LYS LYS A . n A 1 21 ILE 21 39 39 ILE ILE A . n A 1 22 LEU 22 40 40 LEU LEU A . n A 1 23 ASP 23 41 41 ASP ASP A . n A 1 24 TYR 24 42 42 TYR TYR A . n A 1 25 LYS 25 43 43 LYS LYS A . n A 1 26 LYS 26 44 44 LYS LYS A . n A 1 27 GLY 27 45 45 GLY GLY A . n A 1 28 ASP 28 46 46 ASP ASP A . n A 1 29 HIS 29 47 47 HIS HIS A . n A 1 30 GLN 30 48 48 GLN GLN A . n A 1 31 ILE 31 49 49 ILE ILE A . n A 1 32 MET 32 50 50 MET MET A . n A 1 33 ALA 33 51 51 ALA ALA A . n A 1 34 GLY 34 52 52 GLY GLY A . n A 1 35 TYR 35 53 53 TYR TYR A . n A 1 36 PHE 36 54 54 PHE PHE A . n A 1 37 ARG 37 55 55 ARG ARG A . n A 1 38 SER 38 56 56 SER SER A . n A 1 39 TRP 39 57 57 TRP TRP A . n A 1 40 ARG 40 58 58 ARG ARG A . n A 1 41 ASP 41 59 59 ASP ASP A . n A 1 42 THR 42 60 60 THR THR A . n A 1 43 ALA 43 61 61 ALA ALA A . n A 1 44 SER 44 62 62 SER SER A . n A 1 45 GLY 45 63 63 GLY GLY A . n A 1 46 THR 46 64 64 THR THR A . n A 1 47 GLY 47 65 65 GLY GLY A . n A 1 48 ASN 48 66 66 ASN ASN A . n A 1 49 LYS 49 67 67 LYS LYS A . n A 1 50 VAL 50 68 68 VAL VAL A . n A 1 51 SER 51 69 69 SER SER A . n A 1 52 MET 52 70 70 MET MET A . n A 1 53 LEU 53 71 71 LEU LEU A . n A 1 54 ASP 54 72 72 ASP ASP A . n A 1 55 LEU 55 73 73 LEU LEU A . n A 1 56 PRO 56 74 74 PRO PRO A . n A 1 57 ASP 57 75 75 ASP ASP A . n A 1 58 CYS 58 76 76 CYS CYS A . n A 1 59 LEU 59 77 77 LEU LEU A . n A 1 60 ASP 60 78 78 ASP ASP A . n A 1 61 ILE 61 79 79 ILE ILE A . n A 1 62 ALA 62 80 80 ALA ALA A . n A 1 63 PHE 63 81 81 PHE PHE A . n A 1 64 VAL 64 82 82 VAL VAL A . n A 1 65 PHE 65 83 83 PHE PHE A . n A 1 66 PRO 66 84 84 PRO PRO A . n A 1 67 GLU 67 85 85 GLU GLU A . n A 1 68 GLY 68 86 86 GLY GLY A . n A 1 69 ASP 69 87 87 ASP ASP A . n A 1 70 GLU 70 88 88 GLU GLU A . n A 1 71 THR 71 89 89 THR THR A . n A 1 72 ALA 72 90 90 ALA ALA A . n A 1 73 SER 73 91 91 SER SER A . n A 1 74 PHE 74 92 92 PHE PHE A . n A 1 75 TRP 75 93 93 TRP TRP A . n A 1 76 THR 76 94 94 THR THR A . n A 1 77 THR 77 95 95 THR THR A . n A 1 78 LEU 78 96 96 LEU LEU A . n A 1 79 LYS 79 97 97 LYS LYS A . n A 1 80 ASP 80 98 98 ASP ASP A . n A 1 81 THR 81 99 99 THR THR A . n A 1 82 TYR 82 100 100 TYR TYR A . n A 1 83 VAL 83 101 101 VAL VAL A . n A 1 84 PRO 84 102 102 PRO PRO A . n A 1 85 ALA 85 103 103 ALA ALA A . n A 1 86 LEU 86 104 104 LEU LEU A . n A 1 87 HIS 87 105 105 HIS HIS A . n A 1 88 GLY 88 106 106 GLY GLY A . n A 1 89 ARG 89 107 107 ARG ARG A . n A 1 90 GLY 90 108 108 GLY GLY A . n A 1 91 ILE 91 109 109 ILE ILE A . n A 1 92 LYS 92 110 110 LYS LYS A . n A 1 93 VAL 93 111 111 VAL VAL A . n A 1 94 VAL 94 112 112 VAL VAL A . n A 1 95 ARG 95 113 113 ARG ARG A . n A 1 96 SER 96 114 114 SER SER A . n A 1 97 VAL 97 115 115 VAL VAL A . n A 1 98 GLY 98 116 116 GLY GLY A . n A 1 99 ILE 99 117 117 ILE ILE A . n A 1 100 ALA 100 118 118 ALA ALA A . n A 1 101 GLN 101 119 119 GLN GLN A . n A 1 102 LEU 102 120 120 LEU LEU A . n A 1 103 ILE 103 121 121 ILE ILE A . n A 1 104 ASN 104 122 122 ASN ASN A . n A 1 105 THR 105 123 123 THR THR A . n A 1 106 ALA 106 124 124 ALA ALA A . n A 1 107 TRP 107 125 125 TRP TRP A . n A 1 108 ASP 108 126 126 ASP ASP A . n A 1 109 ASN 109 127 127 ASN ASN A . n A 1 110 THR 110 128 128 THR THR A . n A 1 111 PRO 111 129 129 PRO PRO A . n A 1 112 ALA 112 130 130 ALA ALA A . n A 1 113 GLY 113 131 131 GLY GLY A . n A 1 114 TRP 114 132 132 TRP TRP A . n A 1 115 GLN 115 133 133 GLN GLN A . n A 1 116 GLY 116 134 134 GLY GLY A . n A 1 117 LEU 117 135 135 LEU LEU A . n A 1 118 ALA 118 136 136 ALA ALA A . n A 1 119 ASP 119 137 137 ASP ASP A . n A 1 120 ALA 120 138 138 ALA ALA A . n A 1 121 LEU 121 139 139 LEU LEU A . n A 1 122 MET 122 140 140 MET MET A . n A 1 123 LYS 123 141 141 LYS LYS A . n A 1 124 THR 124 142 142 THR THR A . n A 1 125 VAL 125 143 143 VAL VAL A . n A 1 126 ASP 126 144 144 ASP ASP A . n A 1 127 ASP 127 145 145 ASP ASP A . n A 1 128 TYR 128 146 146 TYR TYR A . n A 1 129 GLY 129 147 147 GLY GLY A . n A 1 130 LEU 130 148 148 LEU LEU A . n A 1 131 ASP 131 149 149 ASP ASP A . n A 1 132 GLY 132 150 150 GLY GLY A . n A 1 133 LEU 133 151 151 LEU LEU A . n A 1 134 ASP 134 152 152 ASP ASP A . n A 1 135 ILE 135 153 153 ILE ILE A . n A 1 136 ASN 136 154 154 ASN ASN A . n A 1 137 VAL 137 155 155 VAL VAL A . n A 1 138 GLN 138 156 156 GLN GLN A . n A 1 139 GLN 139 157 157 GLN GLN A . n A 1 140 SER 140 158 158 SER SER A . n A 1 141 LEU 141 159 159 LEU LEU A . n A 1 142 ASN 142 160 160 ASN ASN A . n A 1 143 ALA 143 161 161 ALA ALA A . n A 1 144 ASN 144 162 162 ASN ASN A . n A 1 145 GLN 145 163 163 GLN GLN A . n A 1 146 LEU 146 164 164 LEU LEU A . n A 1 147 LYS 147 165 165 LYS LYS A . n A 1 148 GLN 148 166 166 GLN GLN A . n A 1 149 ALA 149 167 167 ALA ALA A . n A 1 150 THR 150 168 168 THR THR A . n A 1 151 GLY 151 169 169 GLY GLY A . n A 1 152 VAL 152 170 170 VAL VAL A . n A 1 153 PHE 153 171 171 PHE PHE A . n A 1 154 ASN 154 172 172 ASN ASN A . n A 1 155 ALA 155 173 173 ALA ALA A . n A 1 156 LEU 156 174 174 LEU LEU A . n A 1 157 ALA 157 175 175 ALA ALA A . n A 1 158 LYS 158 176 176 LYS LYS A . n A 1 159 LYS 159 177 177 LYS LYS A . n A 1 160 LEU 160 178 178 LEU LEU A . n A 1 161 GLY 161 179 179 GLY GLY A . n A 1 162 PRO 162 180 180 PRO PRO A . n A 1 163 LYS 163 181 181 LYS LYS A . n A 1 164 SER 164 182 182 SER SER A . n A 1 165 GLY 165 183 183 GLY GLY A . n A 1 166 THR 166 184 184 THR THR A . n A 1 167 GLY 167 185 185 GLY GLY A . n A 1 168 LYS 168 186 186 LYS LYS A . n A 1 169 LEU 169 187 187 LEU LEU A . n A 1 170 LEU 170 188 188 LEU LEU A . n A 1 171 ILE 171 189 189 ILE ILE A . n A 1 172 PHE 172 190 190 PHE PHE A . n A 1 173 ASP 173 191 191 ASP ASP A . n A 1 174 THR 174 192 192 THR THR A . n A 1 175 ASN 175 193 193 ASN ASN A . n A 1 176 MET 176 194 194 MET MET A . n A 1 177 ASP 177 195 195 ASP ASP A . n A 1 178 GLY 178 196 196 GLY GLY A . n A 1 179 THR 179 197 197 THR THR A . n A 1 180 GLN 180 198 198 GLN GLN A . n A 1 181 PRO 181 199 199 PRO PRO A . n A 1 182 LEU 182 200 200 LEU LEU A . n A 1 183 TRP 183 201 201 TRP TRP A . n A 1 184 ARG 184 202 202 ARG ARG A . n A 1 185 ASN 185 203 203 ASN ASN A . n A 1 186 VAL 186 204 204 VAL VAL A . n A 1 187 TYR 187 205 205 TYR TYR A . n A 1 188 PRO 188 206 206 PRO PRO A . n A 1 189 THR 189 207 207 THR THR A . n A 1 190 ILE 190 208 208 ILE ILE A . n A 1 191 SER 191 209 209 SER SER A . n A 1 192 TYR 192 210 210 TYR TYR A . n A 1 193 VAL 193 211 211 VAL VAL A . n A 1 194 LEU 194 212 212 LEU LEU A . n A 1 195 ILE 195 213 213 ILE ILE A . n A 1 196 GLN 196 214 214 GLN GLN A . n A 1 197 SER 197 215 215 SER SER A . n A 1 198 TYR 198 216 216 TYR TYR A . n A 1 199 GLY 199 217 217 GLY GLY A . n A 1 200 ARG 200 218 218 ARG ARG A . n A 1 201 SER 201 219 219 SER SER A . n A 1 202 ILE 202 220 220 ILE ILE A . n A 1 203 SER 203 221 221 SER SER A . n A 1 204 GLY 204 222 222 GLY GLY A . n A 1 205 LEU 205 223 223 LEU LEU A . n A 1 206 GLN 206 224 224 GLN GLN A . n A 1 207 THR 207 225 225 THR THR A . n A 1 208 THR 208 226 226 THR THR A . n A 1 209 TYR 209 227 227 TYR TYR A . n A 1 210 ASN 210 228 228 ASN ASN A . n A 1 211 SER 211 229 229 SER SER A . n A 1 212 PHE 212 230 230 PHE PHE A . n A 1 213 LYS 213 231 231 LYS LYS A . n A 1 214 SER 214 232 232 SER SER A . n A 1 215 TYR 215 233 233 TYR TYR A . n A 1 216 ILE 216 234 234 ILE ILE A . n A 1 217 SER 217 235 235 SER SER A . n A 1 218 SER 218 236 236 SER SER A . n A 1 219 LYS 219 237 237 LYS LYS A . n A 1 220 GLN 220 238 238 GLN GLN A . n A 1 221 TYR 221 239 239 TYR TYR A . n A 1 222 LEU 222 240 240 LEU LEU A . n A 1 223 ILE 223 241 241 ILE ILE A . n A 1 224 GLY 224 242 242 GLY GLY A . n A 1 225 PHE 225 243 243 PHE PHE A . n A 1 226 SER 226 244 244 SER SER A . n A 1 227 PHE 227 245 245 PHE PHE A . n A 1 228 TYR 228 246 246 TYR TYR A . n A 1 229 GLU 229 247 247 GLU GLU A . n A 1 230 GLU 230 248 248 GLU GLU A . n A 1 231 ASN 231 249 249 ASN ASN A . n A 1 232 GLY 232 250 250 GLY GLY A . n A 1 233 THR 233 251 251 THR THR A . n A 1 234 ASN 234 252 252 ASN ASN A . n A 1 235 TRP 235 253 253 TRP TRP A . n A 1 236 GLY 236 254 254 GLY GLY A . n A 1 237 ASP 237 255 255 ASP ASP A . n A 1 238 THR 238 256 256 THR THR A . n A 1 239 THR 239 257 257 THR THR A . n A 1 240 THR 240 258 258 THR THR A . n A 1 241 PRO 241 259 259 PRO PRO A . n A 1 242 MET 242 260 260 MET MET A . n A 1 243 THR 243 261 261 THR THR A . n A 1 244 SER 244 262 262 SER SER A . n A 1 245 SER 245 263 263 SER SER A . n A 1 246 ARG 246 264 264 ARG ARG A . n A 1 247 ALA 247 265 265 ALA ALA A . n A 1 248 TRP 248 266 266 TRP TRP A . n A 1 249 GLN 249 267 267 GLN GLN A . n A 1 250 TYR 250 268 268 TYR TYR A . n A 1 251 ALA 251 269 269 ALA ALA A . n A 1 252 LYS 252 270 270 LYS LYS A . n A 1 253 TRP 253 271 271 TRP TRP A . n A 1 254 GLN 254 272 272 GLN GLN A . n A 1 255 PRO 255 273 273 PRO PRO A . n A 1 256 SER 256 274 274 SER SER A . n A 1 257 GLY 257 275 275 GLY GLY A . n A 1 258 ALA 258 276 276 ALA ALA A . n A 1 259 THR 259 277 277 THR THR A . n A 1 260 LYS 260 278 278 LYS LYS A . n A 1 261 GLY 261 279 279 GLY GLY A . n A 1 262 GLY 262 280 280 GLY GLY A . n A 1 263 ILE 263 281 281 ILE ILE A . n A 1 264 PHE 264 282 282 PHE PHE A . n A 1 265 SER 265 283 283 SER SER A . n A 1 266 TYR 266 284 284 TYR TYR A . n A 1 267 ALA 267 285 285 ALA ALA A . n A 1 268 ILE 268 286 286 ILE ILE A . n A 1 269 ASP 269 287 287 ASP ASP A . n A 1 270 ARG 270 288 288 ARG ARG A . n A 1 271 ASP 271 289 289 ASP ASP A . n A 1 272 GLY 272 290 290 GLY GLY A . n A 1 273 VAL 273 291 291 VAL VAL A . n A 1 274 ALA 274 292 292 ALA ALA A . n A 1 275 ILE 275 293 293 ILE ILE A . n A 1 276 GLY 276 294 294 GLY GLY A . n A 1 277 ASP 277 295 295 ASP ASP A . n A 1 278 ASN 278 296 296 ASN ASN A . n A 1 279 THR 279 297 297 THR THR A . n A 1 280 LEU 280 298 298 LEU LEU A . n A 1 281 LYS 281 299 299 LYS LYS A . n A 1 282 THR 282 300 300 THR THR A . n A 1 283 THR 283 301 301 THR THR A . n A 1 284 ASP 284 302 302 ASP ASP A . n A 1 285 PHE 285 303 303 PHE PHE A . n A 1 286 THR 286 304 304 THR THR A . n A 1 287 TRP 287 305 305 TRP TRP A . n A 1 288 THR 288 306 306 THR THR A . n A 1 289 ARG 289 307 307 ARG ARG A . n A 1 290 GLN 290 308 308 GLN GLN A . n A 1 291 LEU 291 309 309 LEU LEU A . n A 1 292 ILE 292 310 310 ILE ILE A . n A 1 293 GLY 293 311 311 GLY GLY A . n A 1 294 ALA 294 312 312 ALA ALA A . n A 1 295 MET 295 313 313 MET MET A . n A 1 296 ASN 296 314 314 ASN ASN A . n A 1 297 PRO 297 315 315 PRO PRO A . n A 1 298 HIS 298 316 ? ? ? A . n A 1 299 HIS 299 317 ? ? ? A . n A 1 300 HIS 300 318 ? ? ? A . n A 1 301 HIS 301 319 ? ? ? A . n A 1 302 HIS 302 320 ? ? ? A . n A 1 303 HIS 303 321 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE 1 401 401 PGE PGE A . D 4 PEG 1 402 402 PEG PEG A . E 4 PEG 1 403 403 PEG PEG A . F 5 ASN 1 406 201 ASN ASN A . G 6 HOH 1 501 12 HOH HOH A . G 6 HOH 2 502 77 HOH HOH A . G 6 HOH 3 503 100 HOH HOH A . G 6 HOH 4 504 46 HOH HOH A . G 6 HOH 5 505 40 HOH HOH A . G 6 HOH 6 506 72 HOH HOH A . G 6 HOH 7 507 130 HOH HOH A . G 6 HOH 8 508 76 HOH HOH A . G 6 HOH 9 509 21 HOH HOH A . G 6 HOH 10 510 24 HOH HOH A . G 6 HOH 11 511 16 HOH HOH A . G 6 HOH 12 512 103 HOH HOH A . G 6 HOH 13 513 29 HOH HOH A . G 6 HOH 14 514 55 HOH HOH A . G 6 HOH 15 515 122 HOH HOH A . G 6 HOH 16 516 69 HOH HOH A . G 6 HOH 17 517 1 HOH HOH A . G 6 HOH 18 518 78 HOH HOH A . G 6 HOH 19 519 9 HOH HOH A . G 6 HOH 20 520 37 HOH HOH A . G 6 HOH 21 521 18 HOH HOH A . G 6 HOH 22 522 22 HOH HOH A . G 6 HOH 23 523 2 HOH HOH A . G 6 HOH 24 524 48 HOH HOH A . G 6 HOH 25 525 59 HOH HOH A . G 6 HOH 26 526 38 HOH HOH A . G 6 HOH 27 527 87 HOH HOH A . G 6 HOH 28 528 6 HOH HOH A . G 6 HOH 29 529 127 HOH HOH A . G 6 HOH 30 530 25 HOH HOH A . G 6 HOH 31 531 124 HOH HOH A . G 6 HOH 32 532 32 HOH HOH A . G 6 HOH 33 533 64 HOH HOH A . G 6 HOH 34 534 50 HOH HOH A . G 6 HOH 35 535 132 HOH HOH A . G 6 HOH 36 536 134 HOH HOH A . G 6 HOH 37 537 62 HOH HOH A . G 6 HOH 38 538 10 HOH HOH A . G 6 HOH 39 539 123 HOH HOH A . G 6 HOH 40 540 31 HOH HOH A . G 6 HOH 41 541 30 HOH HOH A . G 6 HOH 42 542 26 HOH HOH A . G 6 HOH 43 543 15 HOH HOH A . G 6 HOH 44 544 104 HOH HOH A . G 6 HOH 45 545 65 HOH HOH A . G 6 HOH 46 546 27 HOH HOH A . G 6 HOH 47 547 3 HOH HOH A . G 6 HOH 48 548 19 HOH HOH A . G 6 HOH 49 549 89 HOH HOH A . G 6 HOH 50 550 14 HOH HOH A . G 6 HOH 51 551 70 HOH HOH A . G 6 HOH 52 552 4 HOH HOH A . G 6 HOH 53 553 82 HOH HOH A . G 6 HOH 54 554 136 HOH HOH A . G 6 HOH 55 555 53 HOH HOH A . G 6 HOH 56 556 28 HOH HOH A . G 6 HOH 57 557 61 HOH HOH A . G 6 HOH 58 558 36 HOH HOH A . G 6 HOH 59 559 11 HOH HOH A . G 6 HOH 60 560 114 HOH HOH A . G 6 HOH 61 561 7 HOH HOH A . G 6 HOH 62 562 126 HOH HOH A . G 6 HOH 63 563 57 HOH HOH A . G 6 HOH 64 564 128 HOH HOH A . G 6 HOH 65 565 125 HOH HOH A . G 6 HOH 66 566 60 HOH HOH A . G 6 HOH 67 567 85 HOH HOH A . G 6 HOH 68 568 99 HOH HOH A . G 6 HOH 69 569 5 HOH HOH A . G 6 HOH 70 570 41 HOH HOH A . G 6 HOH 71 571 13 HOH HOH A . G 6 HOH 72 572 20 HOH HOH A . G 6 HOH 73 573 47 HOH HOH A . G 6 HOH 74 574 66 HOH HOH A . G 6 HOH 75 575 34 HOH HOH A . G 6 HOH 76 576 42 HOH HOH A . G 6 HOH 77 577 80 HOH HOH A . G 6 HOH 78 578 86 HOH HOH A . G 6 HOH 79 579 43 HOH HOH A . G 6 HOH 80 580 133 HOH HOH A . G 6 HOH 81 581 17 HOH HOH A . G 6 HOH 82 582 68 HOH HOH A . G 6 HOH 83 583 39 HOH HOH A . G 6 HOH 84 584 91 HOH HOH A . G 6 HOH 85 585 73 HOH HOH A . G 6 HOH 86 586 8 HOH HOH A . G 6 HOH 87 587 71 HOH HOH A . G 6 HOH 88 588 23 HOH HOH A . G 6 HOH 89 589 33 HOH HOH A . G 6 HOH 90 590 95 HOH HOH A . G 6 HOH 91 591 56 HOH HOH A . G 6 HOH 92 592 67 HOH HOH A . G 6 HOH 93 593 93 HOH HOH A . G 6 HOH 94 594 88 HOH HOH A . G 6 HOH 95 595 75 HOH HOH A . G 6 HOH 96 596 129 HOH HOH A . G 6 HOH 97 597 115 HOH HOH A . G 6 HOH 98 598 112 HOH HOH A . G 6 HOH 99 599 120 HOH HOH A . G 6 HOH 100 600 44 HOH HOH A . G 6 HOH 101 601 81 HOH HOH A . G 6 HOH 102 602 118 HOH HOH A . G 6 HOH 103 603 52 HOH HOH A . G 6 HOH 104 604 83 HOH HOH A . G 6 HOH 105 605 141 HOH HOH A . G 6 HOH 106 606 90 HOH HOH A . G 6 HOH 107 607 138 HOH HOH A . G 6 HOH 108 608 139 HOH HOH A . G 6 HOH 109 609 63 HOH HOH A . G 6 HOH 110 610 110 HOH HOH A . G 6 HOH 111 611 135 HOH HOH A . G 6 HOH 112 612 116 HOH HOH A . G 6 HOH 113 613 84 HOH HOH A . G 6 HOH 114 614 119 HOH HOH A . G 6 HOH 115 615 109 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1340 ? 1 MORE 18 ? 1 'SSA (A^2)' 12400 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-02 2 'Structure model' 1 1 2019-10-09 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' atom_site 6 4 'Structure model' chem_comp 7 4 'Structure model' entity 8 4 'Structure model' pdbx_branch_scheme 9 4 'Structure model' pdbx_chem_comp_identifier 10 4 'Structure model' pdbx_entity_branch 11 4 'Structure model' pdbx_entity_branch_descriptor 12 4 'Structure model' pdbx_entity_branch_link 13 4 'Structure model' pdbx_entity_branch_list 14 4 'Structure model' pdbx_entity_nonpoly 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' pdbx_struct_assembly_gen 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation_author.identifier_ORCID' 8 4 'Structure model' '_atom_site.B_iso_or_equiv' 9 4 'Structure model' '_atom_site.Cartn_x' 10 4 'Structure model' '_atom_site.Cartn_y' 11 4 'Structure model' '_atom_site.Cartn_z' 12 4 'Structure model' '_atom_site.auth_asym_id' 13 4 'Structure model' '_atom_site.auth_atom_id' 14 4 'Structure model' '_atom_site.auth_comp_id' 15 4 'Structure model' '_atom_site.auth_seq_id' 16 4 'Structure model' '_atom_site.label_asym_id' 17 4 'Structure model' '_atom_site.label_atom_id' 18 4 'Structure model' '_atom_site.label_comp_id' 19 4 'Structure model' '_atom_site.label_entity_id' 20 4 'Structure model' '_atom_site.type_symbol' 21 4 'Structure model' '_chem_comp.name' 22 4 'Structure model' '_chem_comp.type' 23 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.pdbx_role' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 6KPO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 591 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 594 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 27 ? ? -119.87 -165.11 2 1 ASN A 28 ? ? -103.36 52.73 3 1 ALA A 31 ? ? -49.31 158.16 4 1 THR A 32 ? ? -132.39 -36.16 5 1 THR A 99 ? ? -122.22 -61.90 6 1 VAL A 143 ? ? -92.82 -62.47 7 1 GLN A 214 ? ? -55.03 107.77 8 1 THR A 261 ? ? -69.80 0.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 19 ? A MET 1 2 1 Y 1 A SER 20 ? A SER 2 3 1 Y 1 A SER 21 ? A SER 3 4 1 Y 1 A HIS 316 ? A HIS 298 5 1 Y 1 A HIS 317 ? A HIS 299 6 1 Y 1 A HIS 318 ? A HIS 300 7 1 Y 1 A HIS 319 ? A HIS 301 8 1 Y 1 A HIS 320 ? A HIS 302 9 1 Y 1 A HIS 321 ? A HIS 303 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 2 n B 2 FUC 2 B FUC 2 B FUC 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LFucpa1-6DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2/a6-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 FUC 2 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ASN ? ? ASN ? ? 'SUBJECT OF INVESTIGATION' ? 2 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? 3 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'TRIETHYLENE GLYCOL' PGE 4 'DI(HYDROXYETHYL)ETHER' PEG 5 ASPARAGINE ASN 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #