HEADER TRANSCRIPTION 17-JAN-20 6LSD TITLE CRYSTAL STRUCTURE OF YEATS DOMAIN OF HUMAN YEATS2 IN COMPLEX WITH TITLE 2 H3K27BZ PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEATS DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YEATS DOMAIN OF YEATS2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 2; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: HISTONE H3 PEPTIDE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YEATS2, KIAA1197; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS YEATS DOMAIN, HISTONE KBZ MODIFICATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.T.LI,X.L.REN REVDAT 4 29-NOV-23 6LSD 1 LINK REVDAT 3 27-JAN-21 6LSD 1 JRNL REVDAT 2 23-DEC-20 6LSD 1 JRNL REVDAT 1 18-NOV-20 6LSD 0 JRNL AUTH X.REN,Y.ZHOU,Z.XUE,N.HAO,Y.LI,X.GUO,D.WANG,X.SHI,H.LI JRNL TITL HISTONE BENZOYLATION SERVES AS AN EPIGENETIC MARK FOR DPF JRNL TITL 2 AND YEATS FAMILY PROTEINS. JRNL REF NUCLEIC ACIDS RES. V. 49 114 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33290558 JRNL DOI 10.1093/NAR/GKAA1130 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8400 - 4.5600 1.00 2124 145 0.1993 0.2183 REMARK 3 2 4.5500 - 3.6200 1.00 1972 164 0.1604 0.1941 REMARK 3 3 3.6200 - 3.1600 1.00 1977 122 0.1796 0.2193 REMARK 3 4 3.1600 - 2.8700 1.00 1944 138 0.1984 0.2498 REMARK 3 5 2.8700 - 2.6700 1.00 1903 166 0.2007 0.2429 REMARK 3 6 2.6600 - 2.5100 1.00 1919 136 0.2096 0.2766 REMARK 3 7 2.5100 - 2.3800 1.00 1921 143 0.2103 0.3339 REMARK 3 8 2.3800 - 2.2800 1.00 1901 140 0.2049 0.2698 REMARK 3 9 2.2800 - 2.1900 1.00 1897 138 0.2056 0.2881 REMARK 3 10 2.1900 - 2.1200 1.00 1898 145 0.2143 0.2688 REMARK 3 11 2.1100 - 2.0500 1.00 1903 126 0.2355 0.3021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6LSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1300015379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5IQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 9.0, 2.0M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 89.67400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 198 REMARK 465 HIS A 199 REMARK 465 MET A 200 REMARK 465 THR A 201 REMARK 465 HIS A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 279 O HOH B 501 2.15 REMARK 500 O HOH B 502 O HOH B 546 2.17 REMARK 500 O HOH B 566 O HOH B 570 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 265 42.47 -100.88 REMARK 500 ARG B 203 41.36 -104.98 REMARK 500 ASP B 222 0.10 -61.84 REMARK 500 GLU B 226 7.54 -69.94 REMARK 500 ASN B 265 44.88 -107.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 23 and ALA C REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG C 26 and ESU C REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ESU C 27 and SER C REMARK 800 28 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 23 and ALA D REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG D 26 and ESU D REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ESU D 27 and SER D REMARK 800 28 DBREF 6LSD A 201 332 UNP Q9ULM3 YETS2_HUMAN 201 332 DBREF 6LSD B 201 332 UNP Q9ULM3 YETS2_HUMAN 201 332 DBREF 6LSD C 23 31 PDB 6LSD 6LSD 23 31 DBREF 6LSD D 23 31 PDB 6LSD 6LSD 23 31 SEQADV 6LSD SER A 198 UNP Q9ULM3 EXPRESSION TAG SEQADV 6LSD HIS A 199 UNP Q9ULM3 EXPRESSION TAG SEQADV 6LSD MET A 200 UNP Q9ULM3 EXPRESSION TAG SEQADV 6LSD SER B -2 UNP Q9ULM3 EXPRESSION TAG SEQADV 6LSD HIS B -1 UNP Q9ULM3 EXPRESSION TAG SEQADV 6LSD MET B 0 UNP Q9ULM3 EXPRESSION TAG SEQRES 1 A 135 SER HIS MET THR SER ARG LEU PHE VAL LYS LYS THR ILE SEQRES 2 A 135 VAL VAL GLY ASN VAL SER LYS TYR ILE PRO PRO ASP LYS SEQRES 3 A 135 ARG GLU GLU ASN ASP GLN SER THR HIS LYS TRP MET VAL SEQRES 4 A 135 TYR VAL ARG GLY SER ARG ARG GLU PRO SER ILE ASN HIS SEQRES 5 A 135 PHE VAL LYS LYS VAL TRP PHE PHE LEU HIS PRO SER TYR SEQRES 6 A 135 LYS PRO ASN ASP LEU VAL GLU VAL ARG GLU PRO PRO PHE SEQRES 7 A 135 HIS LEU THR ARG ARG GLY TRP GLY GLU PHE PRO VAL ARG SEQRES 8 A 135 VAL GLN VAL HIS PHE LYS ASP SER GLN ASN LYS ARG ILE SEQRES 9 A 135 ASP ILE ILE HIS ASN LEU LYS LEU ASP ARG THR TYR THR SEQRES 10 A 135 GLY LEU GLN THR LEU GLY ALA GLU THR VAL VAL ASP VAL SEQRES 11 A 135 GLU LEU HIS ARG HIS SEQRES 1 B 135 SER HIS MET THR SER ARG LEU PHE VAL LYS LYS THR ILE SEQRES 2 B 135 VAL VAL GLY ASN VAL SER LYS TYR ILE PRO PRO ASP LYS SEQRES 3 B 135 ARG GLU GLU ASN ASP GLN SER THR HIS LYS TRP MET VAL SEQRES 4 B 135 TYR VAL ARG GLY SER ARG ARG GLU PRO SER ILE ASN HIS SEQRES 5 B 135 PHE VAL LYS LYS VAL TRP PHE PHE LEU HIS PRO SER TYR SEQRES 6 B 135 LYS PRO ASN ASP LEU VAL GLU VAL ARG GLU PRO PRO PHE SEQRES 7 B 135 HIS LEU THR ARG ARG GLY TRP GLY GLU PHE PRO VAL ARG SEQRES 8 B 135 VAL GLN VAL HIS PHE LYS ASP SER GLN ASN LYS ARG ILE SEQRES 9 B 135 ASP ILE ILE HIS ASN LEU LYS LEU ASP ARG THR TYR THR SEQRES 10 B 135 GLY LEU GLN THR LEU GLY ALA GLU THR VAL VAL ASP VAL SEQRES 11 B 135 GLU LEU HIS ARG HIS SEQRES 1 C 9 ACE ALA ALA ARG LBZ SER ALA PRO ALA SEQRES 1 D 9 ACE ALA ALA ARG LBZ SER ALA PRO ALA HET ACE C 23 3 HET LBZ C 27 17 HET ACE D 23 3 HET LBZ D 27 17 HET SO4 A 401 5 HET SO4 A 402 5 HET GOL A 403 6 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 C 101 5 HET SO4 D 101 5 HETNAM ACE ACETYL GROUP HETNAM LBZ (2~{S})-2-AZANYL-6-BENZAMIDO-HEXANOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 LBZ 2(C13 H18 N2 O3) FORMUL 5 SO4 9(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 15 HOH *168(H2 O) HELIX 1 AA1 PRO A 220 ARG A 224 5 5 HELIX 2 AA2 SER A 246 HIS A 249 5 4 HELIX 3 AA3 HIS A 259 LYS A 263 5 5 HELIX 4 AA4 PRO B 220 ARG B 224 5 5 HELIX 5 AA5 SER B 246 HIS B 249 5 4 HELIX 6 AA6 HIS B 259 LYS B 263 5 5 SHEET 1 AA1 4 PHE A 275 GLY A 281 0 SHEET 2 AA1 4 HIS A 232 GLY A 240 -1 N TRP A 234 O ARG A 279 SHEET 3 AA1 4 PHE A 205 TYR A 218 -1 N VAL A 211 O ARG A 239 SHEET 4 AA1 4 THR A 318 HIS A 330 -1 O THR A 323 N VAL A 212 SHEET 1 AA2 4 LEU A 267 VAL A 270 0 SHEET 2 AA2 4 VAL A 251 PHE A 257 -1 N PHE A 256 O VAL A 268 SHEET 3 AA2 4 PRO A 286 PHE A 293 -1 O ARG A 288 N PHE A 257 SHEET 4 AA2 4 ILE A 301 ASN A 306 -1 O ILE A 303 N VAL A 289 SHEET 1 AA3 4 HIS B 276 GLY B 281 0 SHEET 2 AA3 4 HIS B 232 ARG B 239 -1 N TRP B 234 O ARG B 279 SHEET 3 AA3 4 PHE B 205 TYR B 218 -1 N VAL B 211 O ARG B 239 SHEET 4 AA3 4 GLN B 317 HIS B 330 -1 O THR B 323 N VAL B 212 SHEET 1 AA4 4 LEU B 267 VAL B 270 0 SHEET 2 AA4 4 VAL B 251 PHE B 257 -1 N PHE B 256 O VAL B 268 SHEET 3 AA4 4 PRO B 286 PHE B 293 -1 O GLN B 290 N TRP B 255 SHEET 4 AA4 4 ILE B 301 ASN B 306 -1 O HIS B 305 N VAL B 287 LINK C ACE C 23 N ALA C 24 1555 1555 1.33 LINK C ARG C 26 N LBZ C 27 1555 1555 1.33 LINK C LBZ C 27 N SER C 28 1555 1555 1.33 LINK C ACE D 23 N ALA D 24 1555 1555 1.33 LINK C ARG D 26 N LBZ D 27 1555 1555 1.33 LINK C LBZ D 27 N SER D 28 1555 1555 1.33 CISPEP 1 LYS A 263 PRO A 264 0 3.97 CISPEP 2 PRO A 273 PRO A 274 0 -4.02 CISPEP 3 LYS B 263 PRO B 264 0 6.99 CISPEP 4 PRO B 273 PRO B 274 0 -7.78 SITE 1 AC1 5 LYS A 233 ARG A 280 HOH A 518 LYS B 208 SITE 2 AC1 5 ARG B 331 SITE 1 AC2 3 ARG A 203 PHE A 205 LYS A 207 SITE 1 AC3 5 GLY A 240 SER A 241 GLU A 244 PRO A 245 SITE 2 AC3 5 SER A 246 SITE 1 AC4 8 ARG A 279 HOH A 509 PRO B 245 SER B 246 SITE 2 AC4 8 HIS B 249 HOH B 503 HOH B 523 HOH B 559 SITE 1 AC5 6 ARG B 203 LYS B 208 THR B 209 HOH B 516 SITE 2 AC5 6 HOH B 528 HOH B 555 SITE 1 AC6 4 ARG B 203 PHE B 205 LYS B 207 HOH B 543 SITE 1 AC7 2 LYS B 299 ARG B 300 SITE 1 AC8 2 LYS B 233 GLN B 317 SITE 1 AC9 4 ACE C 23 ALA C 24 ARG C 26 HOH C 201 SITE 1 AD1 4 ACE D 23 ALA D 24 ARG D 26 HOH D 201 SITE 1 AD2 5 THR A 323 VAL A 324 VAL A 325 ALA C 25 SITE 2 AD2 5 SO4 C 101 SITE 1 AD3 18 SER A 230 HIS A 259 SER A 261 TYR A 262 SITE 2 AD3 18 GLY A 281 TRP A 282 GLY A 283 GLU A 284 SITE 3 AD3 18 PHE A 285 ILE A 304 ALA A 321 GLU A 322 SITE 4 AD3 18 HOH A 533 ALA C 25 SER C 28 SO4 C 101 SITE 5 AD3 18 HOH C 203 HOH C 205 SITE 1 AD4 16 SER A 230 HIS A 259 SER A 261 TYR A 262 SITE 2 AD4 16 GLY A 281 TRP A 282 GLY A 283 GLU A 284 SITE 3 AD4 16 GLY A 320 ALA A 321 GLU A 322 HOH A 533 SITE 4 AD4 16 HOH A 538 ARG C 26 ALA C 29 PRO C 30 SITE 1 AD5 6 THR B 323 VAL B 324 VAL B 325 ALA D 25 SITE 2 AD5 6 ARG D 26 SO4 D 101 SITE 1 AD6 19 SER B 230 HIS B 259 SER B 261 TYR B 262 SITE 2 AD6 19 GLY B 281 TRP B 282 GLY B 283 GLU B 284 SITE 3 AD6 19 PHE B 285 ILE B 304 ALA B 321 GLU B 322 SITE 4 AD6 19 HOH B 532 ALA D 24 ALA D 25 SER D 28 SITE 5 AD6 19 SO4 D 101 HOH D 204 HOH D 207 SITE 1 AD7 17 SER B 230 HIS B 259 SER B 261 TYR B 262 SITE 2 AD7 17 GLY B 281 TRP B 282 GLY B 283 GLU B 284 SITE 3 AD7 17 GLY B 320 ALA B 321 GLU B 322 HOH B 532 SITE 4 AD7 17 HOH B 539 ARG D 26 ALA D 29 PRO D 30 SITE 5 AD7 17 HOH D 203 CRYST1 89.674 89.674 86.943 90.00 90.00 90.00 P 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011502 0.00000