data_6M2P # _entry.id 6M2P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M2P pdb_00006m2p 10.2210/pdb6m2p/pdb WWPDB D_1300015956 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M2P _pdbx_database_status.recvd_initial_deposition_date 2020-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 ? 'Cerretani, C.' 2 ? 'Vosch, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Rsc Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2046-2069 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 23854 _citation.page_last 23860 _citation.title 'Removal of the A10 adenosine in a DNA-stabilized Ag16 nanocluster.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D0RA02672G _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cerretani, C.' 1 ? primary 'Kondo, J.' 2 ? primary 'Vosch, T.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 98.11 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6M2P _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.211 _cell.length_a_esd ? _cell.length_b 33.713 _cell.length_b_esd ? _cell.length_c 58.551 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 6M2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*CP*CP*TP*AP*GP*CP*G)-3') ; 2700.788 4 ? ? ? 'SF file contains Friedel pairs.' 2 non-polymer syn 'SILVER ION' 107.868 32 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer nat 'CHLORIDE ION' 35.453 4 ? ? ? ? 5 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DA)(DC)(DC)(DT)(DA)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CACCTAGCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6M2P _struct_ref.pdbx_db_accession 6M2P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6M2P A 1 ? 9 ? 6M2P 1 ? 9 ? 1 9 2 1 6M2P B 1 ? 9 ? 6M2P 1 ? 9 ? 1 9 3 1 6M2P C 1 ? 9 ? 6M2P 1 ? 9 ? 1 9 4 1 6M2P D 1 ? 9 ? 6M2P 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M2P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MOPS, MPD, Spermine, calcium nitrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-30 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 4.160 _reflns.entry_id 6M2P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.1250 _reflns.d_resolution_low 29.142 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 67312 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.406 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.890 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.210 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.059 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.130 1.150 ? 3.290 ? 15726 5249 ? 4855 ? ? ? ? ? ? ? ? ? ? ? 3.239 ? ? ? 0.430 ? ? 1 1 0.904 ? ? 92.500 ? 0.359 ? ? ? ? ? ? ? ? ? 1.150 1.190 ? 5.110 ? 14983 4922 ? 4644 ? ? ? ? ? ? ? ? ? ? ? 3.226 ? ? ? 0.275 ? ? 2 1 0.960 ? ? 94.400 ? 0.229 ? ? ? ? ? ? ? ? ? 1.190 1.220 ? 6.730 ? 15548 4929 ? 4667 ? ? ? ? ? ? ? ? ? ? ? 3.331 ? ? ? 0.209 ? ? 3 1 0.973 ? ? 94.700 ? 0.175 ? ? ? ? ? ? ? ? ? 1.220 1.260 ? 8.320 ? 15673 4740 ? 4495 ? ? ? ? ? ? ? ? ? ? ? 3.487 ? ? ? 0.170 ? ? 4 1 0.981 ? ? 94.800 ? 0.144 ? ? ? ? ? ? ? ? ? 1.260 1.300 ? 10.470 ? 15170 4587 ? 4399 ? ? ? ? ? ? ? ? ? ? ? 3.449 ? ? ? 0.128 ? ? 5 1 0.988 ? ? 95.900 ? 0.108 ? ? ? ? ? ? ? ? ? 1.300 1.350 ? 11.470 ? 14405 4437 ? 4267 ? ? ? ? ? ? ? ? ? ? ? 3.376 ? ? ? 0.112 ? ? 6 1 0.990 ? ? 96.200 ? 0.094 ? ? ? ? ? ? ? ? ? 1.350 1.400 ? 11.950 ? 13408 4237 ? 4110 ? ? ? ? ? ? ? ? ? ? ? 3.262 ? ? ? 0.106 ? ? 7 1 0.991 ? ? 97.000 ? 0.088 ? ? ? ? ? ? ? ? ? 1.400 1.450 ? 13.240 ? 13273 4083 ? 3966 ? ? ? ? ? ? ? ? ? ? ? 3.347 ? ? ? 0.095 ? ? 8 1 0.992 ? ? 97.100 ? 0.080 ? ? ? ? ? ? ? ? ? 1.450 1.520 ? 15.480 ? 14067 4012 ? 3915 ? ? ? ? ? ? ? ? ? ? ? 3.593 ? ? ? 0.083 ? ? 9 1 0.994 ? ? 97.600 ? 0.071 ? ? ? ? ? ? ? ? ? 1.520 1.590 ? 16.110 ? 13133 3794 ? 3724 ? ? ? ? ? ? ? ? ? ? ? 3.527 ? ? ? 0.081 ? ? 10 1 0.995 ? ? 98.200 ? 0.069 ? ? ? ? ? ? ? ? ? 1.590 1.680 ? 16.930 ? 12176 3561 ? 3480 ? ? ? ? ? ? ? ? ? ? ? 3.499 ? ? ? 0.076 ? ? 11 1 0.996 ? ? 97.700 ? 0.064 ? ? ? ? ? ? ? ? ? 1.680 1.780 ? 18.930 ? 11207 3418 ? 3369 ? ? ? ? ? ? ? ? ? ? ? 3.327 ? ? ? 0.065 ? ? 12 1 0.996 ? ? 98.600 ? 0.055 ? ? ? ? ? ? ? ? ? 1.780 1.900 ? 23.140 ? 10372 3211 ? 3156 ? ? ? ? ? ? ? ? ? ? ? 3.286 ? ? ? 0.050 ? ? 13 1 0.998 ? ? 98.300 ? 0.042 ? ? ? ? ? ? ? ? ? 1.900 2.050 ? 28.400 ? 9907 2946 ? 2911 ? ? ? ? ? ? ? ? ? ? ? 3.403 ? ? ? 0.042 ? ? 14 1 0.998 ? ? 98.800 ? 0.035 ? ? ? ? ? ? ? ? ? 2.050 2.250 ? 35.720 ? 9829 2743 ? 2717 ? ? ? ? ? ? ? ? ? ? ? 3.618 ? ? ? 0.034 ? ? 15 1 0.999 ? ? 99.100 ? 0.029 ? ? ? ? ? ? ? ? ? 2.250 2.520 ? 40.360 ? 8711 2452 ? 2435 ? ? ? ? ? ? ? ? ? ? ? 3.577 ? ? ? 0.030 ? ? 16 1 0.999 ? ? 99.300 ? 0.026 ? ? ? ? ? ? ? ? ? 2.520 2.910 ? 38.200 ? 7509 2187 ? 2168 ? ? ? ? ? ? ? ? ? ? ? 3.464 ? ? ? 0.031 ? ? 17 1 0.999 ? ? 99.100 ? 0.026 ? ? ? ? ? ? ? ? ? 2.910 3.560 ? 34.190 ? 6101 1857 ? 1843 ? ? ? ? ? ? ? ? ? ? ? 3.310 ? ? ? 0.034 ? ? 18 1 0.999 ? ? 99.200 ? 0.028 ? ? ? ? ? ? ? ? ? 3.560 5.030 ? 39.490 ? 5119 1418 ? 1414 ? ? ? ? ? ? ? ? ? ? ? 3.620 ? ? ? 0.031 ? ? 19 1 0.999 ? ? 99.700 ? 0.026 ? ? ? ? ? ? ? ? ? 5.030 29.142 ? 46.390 ? 2936 779 ? 777 ? ? ? ? ? ? ? ? ? ? ? 3.779 ? ? ? 0.026 ? ? 20 1 0.999 ? ? 99.700 ? 0.022 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M2P _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.13 _refine.ls_d_res_low 29.14 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 67302 _refine.ls_number_reflns_R_free 1994 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.76 _refine.ls_percent_reflns_R_free 5.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.0859 _refine.ls_R_factor_R_free 0.0960 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0853 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JR4 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 6.88 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.09 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.13 _refine_hist.d_res_low 29.14 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 857 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 716 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? 934 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.447 ? 1460 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 28.815 ? 456 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.075 ? 180 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.022 ? 46 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.13 1.14 . . 109 2117 90.00 . . . . 0.2379 . . . . . . . . . . . 0.2358 'X-RAY DIFFRACTION' 1.14 1.15 . . 142 2301 94.00 . . . . 0.2051 . . . . . . . . . . . 0.2018 'X-RAY DIFFRACTION' 1.15 1.17 . . 143 2138 94.00 . . . . 0.1693 . . . . . . . . . . . 0.1900 'X-RAY DIFFRACTION' 1.17 1.18 . . 136 2203 94.00 . . . . 0.1325 . . . . . . . . . . . 0.1391 'X-RAY DIFFRACTION' 1.18 1.20 . . 131 2247 95.00 . . . . 0.1200 . . . . . . . . . . . 0.1269 'X-RAY DIFFRACTION' 1.20 1.22 . . 172 2180 95.00 . . . . 0.1026 . . . . . . . . . . . 0.1141 'X-RAY DIFFRACTION' 1.22 1.24 . . 119 2181 95.00 . . . . 0.0936 . . . . . . . . . . . 0.1250 'X-RAY DIFFRACTION' 1.24 1.26 . . 136 2280 95.00 . . . . 0.0884 . . . . . . . . . . . 0.0925 'X-RAY DIFFRACTION' 1.26 1.28 . . 149 2207 96.00 . . . . 0.0866 . . . . . . . . . . . 0.0907 'X-RAY DIFFRACTION' 1.28 1.30 . . 131 2256 97.00 . . . . 0.0876 . . . . . . . . . . . 0.0901 'X-RAY DIFFRACTION' 1.30 1.33 . . 160 2232 96.00 . . . . 0.0889 . . . . . . . . . . . 0.0887 'X-RAY DIFFRACTION' 1.33 1.36 . . 132 2268 97.00 . . . . 0.0749 . . . . . . . . . . . 0.0957 'X-RAY DIFFRACTION' 1.36 1.39 . . 136 2238 97.00 . . . . 0.0691 . . . . . . . . . . . 0.0734 'X-RAY DIFFRACTION' 1.39 1.42 . . 137 2300 97.00 . . . . 0.0651 . . . . . . . . . . . 0.0649 'X-RAY DIFFRACTION' 1.42 1.45 . . 127 2228 97.00 . . . . 0.0648 . . . . . . . . . . . 0.0851 'X-RAY DIFFRACTION' 1.45 1.49 . . 164 2297 97.00 . . . . 0.0624 . . . . . . . . . . . 0.0699 'X-RAY DIFFRACTION' 1.49 1.54 . . 150 2281 98.00 . . . . 0.0651 . . . . . . . . . . . 0.0883 'X-RAY DIFFRACTION' 1.54 1.59 . . 143 2270 98.00 . . . . 0.0645 . . . . . . . . . . . 0.0846 'X-RAY DIFFRACTION' 1.59 1.64 . . 126 2315 98.00 . . . . 0.0687 . . . . . . . . . . . 0.0710 'X-RAY DIFFRACTION' 1.64 1.71 . . 153 2292 98.00 . . . . 0.0693 . . . . . . . . . . . 0.0958 'X-RAY DIFFRACTION' 1.71 1.79 . . 134 2320 99.00 . . . . 0.0721 . . . . . . . . . . . 0.0785 'X-RAY DIFFRACTION' 1.79 1.88 . . 148 2329 98.00 . . . . 0.0697 . . . . . . . . . . . 0.0836 'X-RAY DIFFRACTION' 1.88 2.00 . . 146 2273 98.00 . . . . 0.0726 . . . . . . . . . . . 0.0899 'X-RAY DIFFRACTION' 2.00 2.15 . . 140 2320 99.00 . . . . 0.0689 . . . . . . . . . . . 0.0712 'X-RAY DIFFRACTION' 2.15 2.37 . . 143 2323 99.00 . . . . 0.0609 . . . . . . . . . . . 0.0688 'X-RAY DIFFRACTION' 2.37 2.71 . . 140 2327 99.00 . . . . 0.0654 . . . . . . . . . . . 0.0706 'X-RAY DIFFRACTION' 2.71 3.41 . . 137 2343 99.00 . . . . 0.1142 . . . . . . . . . . . 0.1345 'X-RAY DIFFRACTION' 3.42 29.14 . . 143 2309 100.00 . . . . 0.1174 . . . . . . . . . . . 0.1346 # _struct.entry_id 6M2P _struct.title 'Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (A10-deletion mutant)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M2P _struct_keywords.text 'Nanocluster, Silver, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 4 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 4 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? EA N N 2 ? FA N N 4 ? GA N N 2 ? HA N N 2 ? IA N N 2 ? JA N N 2 ? KA N N 2 ? LA N N 2 ? MA N N 2 ? NA N N 2 ? OA N N 3 ? PA N N 4 ? QA N N 5 ? RA N N 5 ? SA N N 5 ? TA N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 1 O2 ? ? ? 1_555 E AG . AG ? ? A DC 1 A AG 101 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc2 metalc ? ? A DC 1 N3 ? ? ? 1_555 I AG . AG ? ? A DC 1 A AG 105 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc3 metalc ? ? A DA 2 N1 ? ? ? 1_555 O AG . AG ? ? A DA 2 B AG 101 1_555 ? ? ? ? ? ? ? 2.477 ? ? metalc4 metalc ? ? A DC 3 N3 ? ? ? 1_555 E AG . AG ? ? A DC 3 A AG 101 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc5 metalc ? ? A DC 3 OP1 ? ? ? 1_555 M CA . CA ? ? A DC 3 A CA 109 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc6 metalc ? ? A DC 3 O2 ? ? ? 1_555 S AG . AG ? ? A DC 3 B AG 105 1_555 ? ? ? ? ? ? ? 2.593 ? ? metalc7 metalc ? ? A DC 4 N3 ? ? ? 1_555 F AG . AG ? ? A DC 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc8 metalc ? ? A DC 4 O2 ? ? ? 1_555 S AG . AG ? ? A DC 4 B AG 105 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc9 metalc ? ? A DC 4 O2 ? ? ? 1_555 T AG . AG ? ? A DC 4 B AG 106 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc10 metalc ? ? A DA 6 OP1 ? ? ? 1_555 H AG . AG ? ? A DA 6 A AG 104 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc11 metalc ? ? A DA 6 N7 ? ? ? 1_555 L AG . AG ? ? A DA 6 A AG 108 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc12 metalc ? ? A DA 6 OP2 ? ? ? 1_555 V AG . AG ? ? A DA 6 B AG 108 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc13 metalc ? ? A DG 7 N7 ? ? ? 1_555 H AG . AG ? ? A DG 7 A AG 104 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc14 metalc ? ? A DG 7 O6 ? ? ? 1_555 K AG . AG ? ? A DG 7 A AG 107 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc15 metalc ? ? A DG 7 O6 ? ? ? 1_555 L AG . AG ? ? A DG 7 A AG 108 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc16 metalc ? ? A DC 8 N3 ? ? ? 1_555 G AG . AG ? ? A DC 8 A AG 103 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc17 metalc ? ? A DC 8 OP1 ? ? ? 1_555 M CA . CA ? ? A DC 8 A CA 109 2_845 ? ? ? ? ? ? ? 2.327 ? ? metalc18 metalc ? ? A DG 9 O6 ? ? ? 1_555 F AG . AG ? ? A DG 9 A AG 102 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc19 metalc ? ? A DG 9 N1 ? ? ? 1_555 J AG . AG ? ? A DG 9 A AG 106 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc20 metalc ? ? I AG . AG ? ? ? 1_555 B DC 4 O2 ? ? A AG 105 B DC 4 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc21 metalc ? ? J AG . AG ? ? ? 1_555 B DC 4 O2 ? ? A AG 106 B DC 4 1_555 ? ? ? ? ? ? ? 2.647 ? ? metalc22 metalc ? ? L AG . AG ? ? ? 1_555 B DA 6 OP2 ? ? A AG 108 B DA 6 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc23 metalc ? ? M CA . CA ? ? ? 1_555 QA HOH . O ? ? A CA 109 A HOH 223 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc24 metalc ? ? M CA . CA ? ? ? 1_455 B DC 3 OP1 A ? A CA 109 B DC 3 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc25 metalc ? ? M CA . CA ? ? ? 1_455 B DC 3 OP1 B ? A CA 109 B DC 3 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc26 metalc ? ? M CA . CA ? ? ? 1_555 RA HOH . O ? ? A CA 109 B HOH 220 1_655 ? ? ? ? ? ? ? 2.346 ? ? metalc27 metalc ? ? M CA . CA ? ? ? 1_555 RA HOH . O ? ? A CA 109 B HOH 229 1_655 ? ? ? ? ? ? ? 2.369 ? ? metalc28 metalc ? ? B DC 1 O2 ? ? ? 1_555 O AG . AG ? ? B DC 1 B AG 101 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc29 metalc ? ? B DC 1 N3 ? ? ? 1_555 S AG . AG ? ? B DC 1 B AG 105 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc30 metalc ? ? B DC 3 N3 ? ? ? 1_555 O AG . AG ? ? B DC 3 B AG 101 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc31 metalc ? ? B DC 4 N3 ? ? ? 1_555 P AG . AG ? ? B DC 4 B AG 102 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc32 metalc ? ? B DA 6 OP1 ? ? ? 1_555 R AG . AG ? ? B DA 6 B AG 104 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc33 metalc ? ? B DA 6 N7 ? ? ? 1_555 V AG . AG ? ? B DA 6 B AG 108 1_555 ? ? ? ? ? ? ? 2.251 ? ? metalc34 metalc ? ? B DG 7 N7 ? ? ? 1_555 R AG . AG ? ? B DG 7 B AG 104 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc35 metalc ? ? B DG 7 O6 ? ? ? 1_555 U AG . AG ? ? B DG 7 B AG 107 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc36 metalc ? ? B DG 7 O6 ? ? ? 1_555 V AG . AG ? ? B DG 7 B AG 108 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc37 metalc ? ? B DC 8 N3 ? ? ? 1_555 Q AG . AG ? ? B DC 8 B AG 103 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc38 metalc ? ? B DC 8 O2 ? ? ? 1_555 U AG . AG ? ? B DC 8 B AG 107 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc39 metalc ? ? B DG 9 O6 ? ? ? 1_555 P AG . AG ? ? B DG 9 B AG 102 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc40 metalc ? ? B DG 9 N1 ? ? ? 1_555 T AG . AG ? ? B DG 9 B AG 106 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc41 metalc ? ? C DC 1 O2 ? ? ? 1_555 X AG . AG ? ? C DC 1 C AG 101 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc42 metalc ? ? C DC 1 N3 ? ? ? 1_555 BA AG . AG ? ? C DC 1 C AG 105 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc43 metalc ? ? C DA 2 N1 ? ? ? 1_555 GA AG . AG ? ? C DA 2 D AG 101 1_555 ? ? ? ? ? ? ? 2.499 ? ? metalc44 metalc ? ? C DC 3 N3 ? ? ? 1_555 X AG . AG ? ? C DC 3 C AG 101 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc45 metalc ? ? C DC 3 O2 ? ? ? 1_555 KA AG . AG ? ? C DC 3 D AG 105 1_555 ? ? ? ? ? ? ? 2.633 ? ? metalc46 metalc ? ? C DC 4 N3 ? ? ? 1_555 Y AG . AG ? ? C DC 4 C AG 102 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc47 metalc ? ? C DC 4 O2 ? ? ? 1_555 KA AG . AG ? ? C DC 4 D AG 105 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc48 metalc ? ? C DC 4 O2 ? ? ? 1_555 LA AG . AG ? ? C DC 4 D AG 106 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc49 metalc ? ? C DA 6 OP1 ? ? ? 1_555 AA AG . AG ? ? C DA 6 C AG 104 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc50 metalc ? ? C DA 6 N7 ? ? ? 1_555 EA AG . AG ? ? C DA 6 C AG 108 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc51 metalc ? ? C DA 6 OP2 ? ? ? 1_555 NA AG . AG ? ? C DA 6 D AG 108 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc52 metalc ? ? C DG 7 N7 ? ? ? 1_555 AA AG . AG ? ? C DG 7 C AG 104 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc53 metalc ? ? C DG 7 O6 ? ? ? 1_555 DA AG . AG ? ? C DG 7 C AG 107 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc54 metalc ? ? C DG 7 O6 ? ? ? 1_555 EA AG . AG ? ? C DG 7 C AG 108 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc55 metalc ? ? C DC 8 N3 ? ? ? 1_555 Z AG . AG ? ? C DC 8 C AG 103 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc56 metalc ? ? C DC 8 O2 ? ? ? 1_555 DA AG . AG ? ? C DC 8 C AG 107 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc57 metalc ? ? C DC 8 OP1 ? ? ? 1_555 OA CA . CA A ? C DC 8 D CA 109 2_856 ? ? ? ? ? ? ? 2.399 ? ? metalc58 metalc ? ? C DC 8 OP1 ? ? ? 1_555 OA CA . CA B ? C DC 8 D CA 109 2_856 ? ? ? ? ? ? ? 2.415 ? ? metalc59 metalc ? ? C DG 9 O6 ? ? ? 1_555 Y AG . AG ? ? C DG 9 C AG 102 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc60 metalc ? ? C DG 9 N1 ? ? ? 1_555 CA AG . AG ? ? C DG 9 C AG 106 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc61 metalc ? ? BA AG . AG ? ? ? 1_555 D DC 4 O2 ? ? C AG 105 D DC 4 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc62 metalc ? ? CA AG . AG ? ? ? 1_555 D DC 4 O2 ? ? C AG 106 D DC 4 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc63 metalc ? ? EA AG . AG ? ? ? 1_555 D DA 6 OP2 ? ? C AG 108 D DA 6 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc64 metalc ? ? D DC 1 O2 ? ? ? 1_555 GA AG . AG ? ? D DC 1 D AG 101 1_555 ? ? ? ? ? ? ? 2.496 ? ? metalc65 metalc ? ? D DC 1 N3 ? ? ? 1_555 KA AG . AG ? ? D DC 1 D AG 105 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc66 metalc ? ? D DC 3 N3 ? ? ? 1_555 GA AG . AG ? ? D DC 3 D AG 101 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc67 metalc ? ? D DC 3 OP1 A ? ? 1_555 OA CA . CA A ? D DC 3 D CA 109 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc68 metalc ? ? D DC 3 OP1 B ? ? 1_555 OA CA . CA B ? D DC 3 D CA 109 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc69 metalc ? ? D DC 4 N3 ? ? ? 1_555 HA AG . AG ? ? D DC 4 D AG 102 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc70 metalc ? ? D DA 6 OP1 ? ? ? 1_555 JA AG . AG ? ? D DA 6 D AG 104 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc71 metalc ? ? D DA 6 N7 ? ? ? 1_555 NA AG . AG ? ? D DA 6 D AG 108 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc72 metalc ? ? D DG 7 N7 ? ? ? 1_555 JA AG . AG ? ? D DG 7 D AG 104 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc73 metalc ? ? D DG 7 O6 ? ? ? 1_555 MA AG . AG ? ? D DG 7 D AG 107 1_555 ? ? ? ? ? ? ? 2.553 ? ? metalc74 metalc ? ? D DG 7 O6 ? ? ? 1_555 NA AG . AG ? ? D DG 7 D AG 108 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc75 metalc ? ? D DG 7 OP1 ? ? ? 1_555 OA CA . CA A ? D DG 7 D CA 109 2_756 ? ? ? ? ? ? ? 2.064 ? ? metalc76 metalc ? ? D DG 7 OP1 ? ? ? 1_555 OA CA . CA B ? D DG 7 D CA 109 2_756 ? ? ? ? ? ? ? 2.510 ? ? metalc77 metalc ? ? D DC 8 N3 ? ? ? 1_555 IA AG . AG ? ? D DC 8 D AG 103 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc78 metalc ? ? D DC 8 O2 ? ? ? 1_555 MA AG . AG ? ? D DC 8 D AG 107 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc79 metalc ? ? D DG 9 O6 ? ? ? 1_555 HA AG . AG ? ? D DG 9 D AG 102 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc80 metalc ? ? D DG 9 N1 ? ? ? 1_555 LA AG . AG ? ? D DG 9 D AG 106 1_555 ? ? ? ? ? ? ? 2.309 ? ? hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DC 3 N4 ? ? A DC 1 A DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 3 O2 ? ? A DC 1 B DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 4 O2 ? ? A DC 1 B DC 4 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DC 3 O2 ? ? A DA 2 B DC 3 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 3 B DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 4 B DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog9 hydrog ? ? A DT 5 O2 ? ? ? 1_555 B DG 7 N1 ? ? A DT 5 B DG 7 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog10 hydrog ? ? A DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? A DT 5 D DA 6 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DT 5 O2 ? ? A DG 7 B DT 5 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 4 O2 ? ? A DG 9 B DC 4 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DC 3 N4 ? ? B DC 1 B DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog14 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 4 B DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog15 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 6 C DT 5 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog16 hydrog ? ? C DC 1 O2 ? ? ? 1_555 C DC 3 N4 ? ? C DC 1 C DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog17 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DC 4 O2 ? ? C DC 1 D DC 4 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog18 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DC 3 O2 ? ? C DA 2 D DC 3 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog19 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DC 1 N4 ? ? C DC 3 D DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog20 hydrog ? ? C DC 4 N4 ? ? ? 1_555 C DG 9 O6 ? ? C DC 4 C DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog21 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DC 1 N4 ? ? C DC 4 D DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog22 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 4 D DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog23 hydrog ? ? C DT 5 O2 ? ? ? 1_555 D DG 7 N1 ? ? C DT 5 D DG 7 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog24 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DT 5 O2 ? ? C DG 7 D DT 5 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog25 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 4 O2 ? ? C DG 9 D DC 4 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog26 hydrog ? ? D DC 1 O2 ? ? ? 1_555 D DC 3 N4 ? ? D DC 1 D DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog27 hydrog ? ? D DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? D DC 4 D DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 6M2P _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.041304 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005889 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029662 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017252 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG C CA CL H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DA 2 2 2 DA DA C . n C 1 3 DC 3 3 3 DC DC C . n C 1 4 DC 4 4 4 DC DC C . n C 1 5 DT 5 5 5 DT DT C . n C 1 6 DA 6 6 6 DA DA C . n C 1 7 DG 7 7 7 DG DG C . n C 1 8 DC 8 8 8 DC DC C . n C 1 9 DG 9 9 9 DG DG C . n D 1 1 DC 1 1 1 DC DC D . n D 1 2 DA 2 2 2 DA DA D . n D 1 3 DC 3 3 3 DC DC D . n D 1 4 DC 4 4 4 DC DC D . n D 1 5 DT 5 5 5 DT DT D . n D 1 6 DA 6 6 6 DA DA D . n D 1 7 DG 7 7 7 DG DG D . n D 1 8 DC 8 8 8 DC DC D . n D 1 9 DG 9 9 9 DG DG D . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email j.kondo@sophia.ac.jp _pdbx_contact_author.name_first Jiro _pdbx_contact_author.name_last Kondo _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG 1 101 9 AG AG A . F 2 AG 1 102 10 AG AG A . G 2 AG 1 103 11 AG AG A . H 2 AG 1 104 12 AG AG A . I 2 AG 1 105 13 AG AG A . J 2 AG 1 106 14 AG AG A . K 2 AG 1 107 15 AG AG A . L 2 AG 1 108 16 AG AG A . M 3 CA 1 109 1 CA CA A . N 4 CL 1 110 2 CL CL A . O 2 AG 1 101 1 AG AG B . P 2 AG 1 102 2 AG AG B . Q 2 AG 1 103 3 AG AG B . R 2 AG 1 104 4 AG AG B . S 2 AG 1 105 5 AG AG B . T 2 AG 1 106 6 AG AG B . U 2 AG 1 107 7 AG AG B . V 2 AG 1 108 8 AG AG B . W 4 CL 1 109 1 CL CL B . X 2 AG 1 101 25 AG AG C . Y 2 AG 1 102 26 AG AG C . Z 2 AG 1 103 27 AG AG C . AA 2 AG 1 104 28 AG AG C . BA 2 AG 1 105 29 AG AG C . CA 2 AG 1 106 30 AG AG C . DA 2 AG 1 107 31 AG AG C . EA 2 AG 1 108 32 AG AG C . FA 4 CL 1 109 4 CL CL C . GA 2 AG 1 101 17 AG AG D . HA 2 AG 1 102 18 AG AG D . IA 2 AG 1 103 19 AG AG D . JA 2 AG 1 104 20 AG AG D . KA 2 AG 1 105 21 AG AG D . LA 2 AG 1 106 22 AG AG D . MA 2 AG 1 107 23 AG AG D . NA 2 AG 1 108 24 AG AG D . OA 3 CA 1 109 2 CA CA D . PA 4 CL 1 110 3 CL CL D . QA 5 HOH 1 201 40 HOH HOH A . QA 5 HOH 2 202 46 HOH HOH A . QA 5 HOH 3 203 23 HOH HOH A . QA 5 HOH 4 204 58 HOH HOH A . QA 5 HOH 5 205 44 HOH HOH A . QA 5 HOH 6 206 30 HOH HOH A . QA 5 HOH 7 207 15 HOH HOH A . QA 5 HOH 8 208 19 HOH HOH A . QA 5 HOH 9 209 36 HOH HOH A . QA 5 HOH 10 210 53 HOH HOH A . QA 5 HOH 11 211 68 HOH HOH A . QA 5 HOH 12 212 31 HOH HOH A . QA 5 HOH 13 213 12 HOH HOH A . QA 5 HOH 14 214 20 HOH HOH A . QA 5 HOH 15 215 6 HOH HOH A . QA 5 HOH 16 216 105 HOH HOH A . QA 5 HOH 17 217 56 HOH HOH A . QA 5 HOH 18 218 87 HOH HOH A . QA 5 HOH 19 219 63 HOH HOH A . QA 5 HOH 20 220 104 HOH HOH A . QA 5 HOH 21 221 54 HOH HOH A . QA 5 HOH 22 222 90 HOH HOH A . QA 5 HOH 23 223 3 HOH HOH A . QA 5 HOH 24 224 55 HOH HOH A . QA 5 HOH 25 225 83 HOH HOH A . QA 5 HOH 26 226 43 HOH HOH A . QA 5 HOH 27 227 93 HOH HOH A . QA 5 HOH 28 228 73 HOH HOH A . QA 5 HOH 29 229 45 HOH HOH A . RA 5 HOH 1 201 37 HOH HOH B . RA 5 HOH 2 202 91 HOH HOH B . RA 5 HOH 3 203 13 HOH HOH B . RA 5 HOH 4 204 28 HOH HOH B . RA 5 HOH 5 205 108 HOH HOH B . RA 5 HOH 6 206 14 HOH HOH B . RA 5 HOH 7 207 26 HOH HOH B . RA 5 HOH 8 208 4 HOH HOH B . RA 5 HOH 9 209 76 HOH HOH B . RA 5 HOH 10 210 34 HOH HOH B . RA 5 HOH 11 211 74 HOH HOH B . RA 5 HOH 12 212 24 HOH HOH B . RA 5 HOH 13 213 8 HOH HOH B . RA 5 HOH 14 214 65 HOH HOH B . RA 5 HOH 15 215 75 HOH HOH B . RA 5 HOH 16 216 106 HOH HOH B . RA 5 HOH 17 217 21 HOH HOH B . RA 5 HOH 18 218 25 HOH HOH B . RA 5 HOH 19 219 9 HOH HOH B . RA 5 HOH 20 220 2 HOH HOH B . RA 5 HOH 21 221 103 HOH HOH B . RA 5 HOH 22 222 49 HOH HOH B . RA 5 HOH 23 223 47 HOH HOH B . RA 5 HOH 24 224 89 HOH HOH B . RA 5 HOH 25 225 27 HOH HOH B . RA 5 HOH 26 226 35 HOH HOH B . RA 5 HOH 27 227 38 HOH HOH B . RA 5 HOH 28 228 96 HOH HOH B . RA 5 HOH 29 229 1 HOH HOH B . RA 5 HOH 30 230 86 HOH HOH B . RA 5 HOH 31 231 78 HOH HOH B . RA 5 HOH 32 232 141 HOH HOH B . RA 5 HOH 33 233 146 HOH HOH B . RA 5 HOH 34 234 60 HOH HOH B . RA 5 HOH 35 235 72 HOH HOH B . SA 5 HOH 1 201 57 HOH HOH C . SA 5 HOH 2 202 64 HOH HOH C . SA 5 HOH 3 203 79 HOH HOH C . SA 5 HOH 4 204 69 HOH HOH C . SA 5 HOH 5 205 50 HOH HOH C . SA 5 HOH 6 206 16 HOH HOH C . SA 5 HOH 7 207 17 HOH HOH C . SA 5 HOH 8 208 70 HOH HOH C . SA 5 HOH 9 209 7 HOH HOH C . SA 5 HOH 10 210 88 HOH HOH C . SA 5 HOH 11 211 145 HOH HOH C . SA 5 HOH 12 212 84 HOH HOH C . SA 5 HOH 13 213 77 HOH HOH C . SA 5 HOH 14 214 95 HOH HOH C . TA 5 HOH 1 201 85 HOH HOH D . TA 5 HOH 2 202 42 HOH HOH D . TA 5 HOH 3 203 61 HOH HOH D . TA 5 HOH 4 204 22 HOH HOH D . TA 5 HOH 5 205 66 HOH HOH D . TA 5 HOH 6 206 52 HOH HOH D . TA 5 HOH 7 207 92 HOH HOH D . TA 5 HOH 8 208 29 HOH HOH D . TA 5 HOH 9 209 62 HOH HOH D . TA 5 HOH 10 210 10 HOH HOH D . TA 5 HOH 11 211 5 HOH HOH D . TA 5 HOH 12 212 48 HOH HOH D . TA 5 HOH 13 213 11 HOH HOH D . TA 5 HOH 14 214 18 HOH HOH D . TA 5 HOH 15 215 80 HOH HOH D . TA 5 HOH 16 216 32 HOH HOH D . TA 5 HOH 17 217 33 HOH HOH D . TA 5 HOH 18 218 39 HOH HOH D . TA 5 HOH 19 219 99 HOH HOH D . TA 5 HOH 20 220 41 HOH HOH D . TA 5 HOH 21 221 98 HOH HOH D . TA 5 HOH 22 222 102 HOH HOH D . TA 5 HOH 23 223 100 HOH HOH D . TA 5 HOH 24 224 59 HOH HOH D . TA 5 HOH 25 225 51 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,QA,RA 2 1 C,D,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,SA,TA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A DC 1 ? A DC 1 ? 1_555 AG ? E AG . ? A AG 101 ? 1_555 N3 ? A DC 3 ? A DC 3 ? 1_555 94.4 ? 2 N3 ? A DC 1 ? A DC 1 ? 1_555 AG ? I AG . ? A AG 105 ? 1_555 O2 ? B DC 4 ? B DC 4 ? 1_555 100.1 ? 3 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? O AG . ? B AG 101 ? 1_555 O2 ? B DC 1 ? B DC 1 ? 1_555 87.5 ? 4 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? O AG . ? B AG 101 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 108.3 ? 5 O2 ? B DC 1 ? B DC 1 ? 1_555 AG ? O AG . ? B AG 101 ? 1_555 N3 ? B DC 3 ? B DC 3 ? 1_555 89.8 ? 6 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 ? A DC 8 ? A DC 8 ? 1_555 64.1 ? 7 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? QA HOH . ? A HOH 223 ? 1_555 85.9 ? 8 OP1 ? A DC 8 ? A DC 8 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? QA HOH . ? A HOH 223 ? 1_555 132.0 ? 9 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 A B DC 3 ? B DC 3 ? 1_555 19.8 ? 10 OP1 ? A DC 8 ? A DC 8 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 A B DC 3 ? B DC 3 ? 1_555 76.4 ? 11 O ? QA HOH . ? A HOH 223 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 A B DC 3 ? B DC 3 ? 1_555 66.9 ? 12 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 B B DC 3 ? B DC 3 ? 1_555 19.9 ? 13 OP1 ? A DC 8 ? A DC 8 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 B B DC 3 ? B DC 3 ? 1_555 76.4 ? 14 O ? QA HOH . ? A HOH 223 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 B B DC 3 ? B DC 3 ? 1_555 66.8 ? 15 OP1 A B DC 3 ? B DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 OP1 B B DC 3 ? B DC 3 ? 1_555 0.2 ? 16 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 220 ? 1_655 88.5 ? 17 OP1 ? A DC 8 ? A DC 8 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 220 ? 1_655 38.1 ? 18 O ? QA HOH . ? A HOH 223 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 220 ? 1_655 170.0 ? 19 OP1 A B DC 3 ? B DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 220 ? 1_655 106.5 ? 20 OP1 B B DC 3 ? B DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 220 ? 1_655 106.6 ? 21 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 89.9 ? 22 OP1 ? A DC 8 ? A DC 8 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 59.4 ? 23 O ? QA HOH . ? A HOH 223 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 85.6 ? 24 OP1 A B DC 3 ? B DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 83.1 ? 25 OP1 B B DC 3 ? B DC 3 ? 1_555 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 83.0 ? 26 O ? RA HOH . ? B HOH 220 ? 1_655 CA ? M CA . ? A CA 109 ? 1_555 O ? RA HOH . ? B HOH 229 ? 1_655 86.1 ? 27 O2 ? A DC 3 ? A DC 3 ? 1_555 AG ? S AG . ? B AG 105 ? 1_555 O2 ? A DC 4 ? A DC 4 ? 1_555 81.5 ? 28 O2 ? A DC 3 ? A DC 3 ? 1_555 AG ? S AG . ? B AG 105 ? 1_555 N3 ? B DC 1 ? B DC 1 ? 1_555 82.0 ? 29 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? S AG . ? B AG 105 ? 1_555 N3 ? B DC 1 ? B DC 1 ? 1_555 96.9 ? 30 N3 ? A DC 4 ? A DC 4 ? 1_555 AG ? F AG . ? A AG 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 90.0 ? 31 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? T AG . ? B AG 106 ? 1_555 N1 ? B DG 9 ? B DG 9 ? 1_555 86.0 ? 32 OP1 ? A DA 6 ? A DA 6 ? 1_555 AG ? H AG . ? A AG 104 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 91.9 ? 33 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? L AG . ? A AG 108 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 96.4 ? 34 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? L AG . ? A AG 108 ? 1_555 OP2 ? B DA 6 ? B DA 6 ? 1_555 89.8 ? 35 O6 ? A DG 7 ? A DG 7 ? 1_555 AG ? L AG . ? A AG 108 ? 1_555 OP2 ? B DA 6 ? B DA 6 ? 1_555 100.8 ? 36 OP2 ? A DA 6 ? A DA 6 ? 1_555 AG ? V AG . ? B AG 108 ? 1_555 N7 ? B DA 6 ? B DA 6 ? 1_555 90.9 ? 37 OP2 ? A DA 6 ? A DA 6 ? 1_555 AG ? V AG . ? B AG 108 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 91.9 ? 38 N7 ? B DA 6 ? B DA 6 ? 1_555 AG ? V AG . ? B AG 108 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 101.2 ? 39 N1 ? A DG 9 ? A DG 9 ? 1_555 AG ? J AG . ? A AG 106 ? 1_555 O2 ? B DC 4 ? B DC 4 ? 1_555 88.8 ? 40 N3 ? B DC 4 ? B DC 4 ? 1_555 AG ? P AG . ? B AG 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 90.8 ? 41 OP1 ? B DA 6 ? B DA 6 ? 1_555 AG ? R AG . ? B AG 104 ? 1_555 N7 ? B DG 7 ? B DG 7 ? 1_555 99.7 ? 42 O6 ? B DG 7 ? B DG 7 ? 1_555 AG ? U AG . ? B AG 107 ? 1_555 O2 ? B DC 8 ? B DC 8 ? 1_555 77.7 ? 43 O2 ? C DC 1 ? C DC 1 ? 1_555 AG ? X AG . ? C AG 101 ? 1_555 N3 ? C DC 3 ? C DC 3 ? 1_555 95.0 ? 44 N3 ? C DC 1 ? C DC 1 ? 1_555 AG ? BA AG . ? C AG 105 ? 1_555 O2 ? D DC 4 ? D DC 4 ? 1_555 98.2 ? 45 N1 ? C DA 2 ? C DA 2 ? 1_555 AG ? GA AG . ? D AG 101 ? 1_555 O2 ? D DC 1 ? D DC 1 ? 1_555 88.0 ? 46 N1 ? C DA 2 ? C DA 2 ? 1_555 AG ? GA AG . ? D AG 101 ? 1_555 N3 ? D DC 3 ? D DC 3 ? 1_555 108.5 ? 47 O2 ? D DC 1 ? D DC 1 ? 1_555 AG ? GA AG . ? D AG 101 ? 1_555 N3 ? D DC 3 ? D DC 3 ? 1_555 89.3 ? 48 O2 ? C DC 3 ? C DC 3 ? 1_555 AG ? KA AG . ? D AG 105 ? 1_555 O2 ? C DC 4 ? C DC 4 ? 1_555 82.5 ? 49 O2 ? C DC 3 ? C DC 3 ? 1_555 AG ? KA AG . ? D AG 105 ? 1_555 N3 ? D DC 1 ? D DC 1 ? 1_555 83.3 ? 50 O2 ? C DC 4 ? C DC 4 ? 1_555 AG ? KA AG . ? D AG 105 ? 1_555 N3 ? D DC 1 ? D DC 1 ? 1_555 97.6 ? 51 N3 ? C DC 4 ? C DC 4 ? 1_555 AG ? Y AG . ? C AG 102 ? 1_555 O6 ? C DG 9 ? C DG 9 ? 1_555 90.0 ? 52 O2 ? C DC 4 ? C DC 4 ? 1_555 AG ? LA AG . ? D AG 106 ? 1_555 N1 ? D DG 9 ? D DG 9 ? 1_555 86.2 ? 53 OP1 ? C DA 6 ? C DA 6 ? 1_555 AG ? AA AG . ? C AG 104 ? 1_555 N7 ? C DG 7 ? C DG 7 ? 1_555 92.6 ? 54 N7 ? C DA 6 ? C DA 6 ? 1_555 AG ? EA AG . ? C AG 108 ? 1_555 O6 ? C DG 7 ? C DG 7 ? 1_555 94.2 ? 55 N7 ? C DA 6 ? C DA 6 ? 1_555 AG ? EA AG . ? C AG 108 ? 1_555 OP2 ? D DA 6 ? D DA 6 ? 1_555 90.4 ? 56 O6 ? C DG 7 ? C DG 7 ? 1_555 AG ? EA AG . ? C AG 108 ? 1_555 OP2 ? D DA 6 ? D DA 6 ? 1_555 100.2 ? 57 OP2 ? C DA 6 ? C DA 6 ? 1_555 AG ? NA AG . ? D AG 108 ? 1_555 N7 ? D DA 6 ? D DA 6 ? 1_555 90.5 ? 58 OP2 ? C DA 6 ? C DA 6 ? 1_555 AG ? NA AG . ? D AG 108 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 91.9 ? 59 N7 ? D DA 6 ? D DA 6 ? 1_555 AG ? NA AG . ? D AG 108 ? 1_555 O6 ? D DG 7 ? D DG 7 ? 1_555 99.8 ? 60 O6 ? C DG 7 ? C DG 7 ? 1_555 AG ? DA AG . ? C AG 107 ? 1_555 O2 ? C DC 8 ? C DC 8 ? 1_555 74.5 ? 61 OP1 ? C DC 8 ? C DC 8 ? 1_555 CA A OA CA . ? D CA 109 ? 2_856 OP1 A D DC 3 ? D DC 3 ? 1_555 52.7 ? 62 OP1 ? C DC 8 ? C DC 8 ? 1_555 CA A OA CA . ? D CA 109 ? 2_856 OP1 ? D DG 7 ? D DG 7 ? 1_555 62.2 ? 63 OP1 A D DC 3 ? D DC 3 ? 1_555 CA A OA CA . ? D CA 109 ? 2_856 OP1 ? D DG 7 ? D DG 7 ? 1_555 39.2 ? 64 OP1 ? C DC 8 ? C DC 8 ? 1_555 CA B OA CA . ? D CA 109 ? 2_856 OP1 B D DC 3 ? D DC 3 ? 1_555 32.3 ? 65 OP1 ? C DC 8 ? C DC 8 ? 1_555 CA B OA CA . ? D CA 109 ? 2_856 OP1 ? D DG 7 ? D DG 7 ? 1_555 63.7 ? 66 OP1 B D DC 3 ? D DC 3 ? 1_555 CA B OA CA . ? D CA 109 ? 2_856 OP1 ? D DG 7 ? D DG 7 ? 1_555 38.3 ? 67 N1 ? C DG 9 ? C DG 9 ? 1_555 AG ? CA AG . ? C AG 106 ? 1_555 O2 ? D DC 4 ? D DC 4 ? 1_555 88.4 ? 68 N3 ? D DC 4 ? D DC 4 ? 1_555 AG ? HA AG . ? D AG 102 ? 1_555 O6 ? D DG 9 ? D DG 9 ? 1_555 91.0 ? 69 OP1 ? D DA 6 ? D DA 6 ? 1_555 AG ? JA AG . ? D AG 104 ? 1_555 N7 ? D DG 7 ? D DG 7 ? 1_555 99.2 ? 70 O6 ? D DG 7 ? D DG 7 ? 1_555 AG ? MA AG . ? D AG 107 ? 1_555 O2 ? D DC 8 ? D DC 8 ? 1_555 76.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-01 2 'Structure model' 2 0 2023-03-22 3 'Structure model' 2 1 2023-11-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Ligand identity' 'AG atoms with low occupancy are replaced with Cl ions according to our new experimental results by Mass Spectroscopy.' # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Author supporting evidence' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Database references' 5 2 'Structure model' 'Derived calculations' 6 2 'Structure model' 'Non-polymer description' 7 2 'Structure model' 'Refinement description' 8 2 'Structure model' 'Structure summary' 9 3 'Structure model' 'Data collection' 10 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' atom_type 4 2 'Structure model' chem_comp 5 2 'Structure model' database_2 6 2 'Structure model' entity 7 2 'Structure model' ndb_struct_na_base_pair 8 2 'Structure model' ndb_struct_na_base_pair_step 9 2 'Structure model' pdbx_contact_author 10 2 'Structure model' pdbx_entity_instance_feature 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_nonpoly_scheme 13 2 'Structure model' pdbx_struct_conn_angle 14 2 'Structure model' pdbx_validate_planes 15 2 'Structure model' pdbx_validate_rmsd_angle 16 2 'Structure model' pdbx_validate_rmsd_bond 17 2 'Structure model' refine 18 2 'Structure model' refine_hist 19 2 'Structure model' refine_ls_restr 20 2 'Structure model' refine_ls_shell 21 2 'Structure model' software 22 2 'Structure model' struct_asym 23 2 'Structure model' struct_conn 24 2 'Structure model' struct_site 25 2 'Structure model' struct_site_gen 26 3 'Structure model' chem_comp_atom 27 3 'Structure model' chem_comp_bond 28 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 2 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 3 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 4 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 5 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 6 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 7 2 'Structure model' '_atom_site_anisotrop.id' 8 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 9 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 10 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 11 2 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 12 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 13 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 14 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 15 2 'Structure model' '_atom_site_anisotrop.type_symbol' 16 2 'Structure model' '_chem_comp.formula' 17 2 'Structure model' '_chem_comp.formula_weight' 18 2 'Structure model' '_chem_comp.id' 19 2 'Structure model' '_chem_comp.mon_nstd_flag' 20 2 'Structure model' '_chem_comp.name' 21 2 'Structure model' '_chem_comp.type' 22 2 'Structure model' '_database_2.pdbx_DOI' 23 2 'Structure model' '_database_2.pdbx_database_accession' 24 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_rise' 25 2 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 26 2 'Structure model' '_ndb_struct_na_base_pair_step.i_auth_asym_id_1' 27 2 'Structure model' '_ndb_struct_na_base_pair_step.i_auth_seq_id_1' 28 2 'Structure model' '_ndb_struct_na_base_pair_step.i_auth_seq_id_2' 29 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_asym_id_1' 30 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_comp_id_1' 31 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_comp_id_2' 32 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_seq_id_1' 33 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_seq_id_2' 34 2 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 35 2 'Structure model' '_ndb_struct_na_base_pair_step.j_auth_asym_id_1' 36 2 'Structure model' '_ndb_struct_na_base_pair_step.j_auth_seq_id_1' 37 2 'Structure model' '_ndb_struct_na_base_pair_step.j_auth_seq_id_2' 38 2 'Structure model' '_ndb_struct_na_base_pair_step.j_label_asym_id_1' 39 2 'Structure model' '_ndb_struct_na_base_pair_step.j_label_seq_id_1' 40 2 'Structure model' '_ndb_struct_na_base_pair_step.j_label_seq_id_2' 41 2 'Structure model' '_ndb_struct_na_base_pair_step.rise' 42 2 'Structure model' '_ndb_struct_na_base_pair_step.roll' 43 2 'Structure model' '_ndb_struct_na_base_pair_step.shift' 44 2 'Structure model' '_ndb_struct_na_base_pair_step.slide' 45 2 'Structure model' '_ndb_struct_na_base_pair_step.step_name' 46 2 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 47 2 'Structure model' '_ndb_struct_na_base_pair_step.tip' 48 2 'Structure model' '_ndb_struct_na_base_pair_step.twist' 49 2 'Structure model' '_ndb_struct_na_base_pair_step.x_displacement' 50 2 'Structure model' '_ndb_struct_na_base_pair_step.y_displacement' 51 2 'Structure model' '_pdbx_contact_author.id' 52 2 'Structure model' '_pdbx_nonpoly_scheme.asym_id' 53 2 'Structure model' '_pdbx_nonpoly_scheme.auth_mon_id' 54 2 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 55 2 'Structure model' '_pdbx_nonpoly_scheme.entity_id' 56 2 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 57 2 'Structure model' '_pdbx_nonpoly_scheme.ndb_seq_num' 58 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 59 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_seq_num' 60 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_strand_id' 61 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 62 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 63 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 64 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 65 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 66 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 67 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 68 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 69 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 70 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 71 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 72 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_alt_id' 73 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 74 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 75 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 76 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 77 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 78 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 79 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 80 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 81 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 82 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 83 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 84 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 85 2 'Structure model' '_pdbx_struct_conn_angle.value' 86 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_asym_id_1' 87 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_asym_id_2' 88 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_comp_id_1' 89 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_comp_id_2' 90 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_seq_id_1' 91 2 'Structure model' '_pdbx_validate_rmsd_bond.auth_seq_id_2' 92 2 'Structure model' '_pdbx_validate_rmsd_bond.bond_deviation' 93 2 'Structure model' '_pdbx_validate_rmsd_bond.bond_value' 94 2 'Structure model' '_pdbx_validate_rmsd_bond.label_alt_id_1' 95 2 'Structure model' '_pdbx_validate_rmsd_bond.label_alt_id_2' 96 2 'Structure model' '_refine.B_iso_max' 97 2 'Structure model' '_refine.B_iso_mean' 98 2 'Structure model' '_refine.B_iso_min' 99 2 'Structure model' '_refine.ls_R_factor_R_free' 100 2 'Structure model' '_refine.ls_R_factor_R_work' 101 2 'Structure model' '_refine.ls_R_factor_obs' 102 2 'Structure model' '_refine.ls_d_res_high' 103 2 'Structure model' '_refine.ls_d_res_low' 104 2 'Structure model' '_refine.ls_number_reflns_R_free' 105 2 'Structure model' '_refine.pdbx_overall_phase_error' 106 2 'Structure model' '_refine.pdbx_stereochemistry_target_values' 107 2 'Structure model' '_refine.solvent_model_details' 108 2 'Structure model' '_refine_hist.cycle_id' 109 2 'Structure model' '_refine_hist.d_res_high' 110 2 'Structure model' '_refine_hist.d_res_low' 111 2 'Structure model' '_refine_hist.number_atoms_total' 112 2 'Structure model' '_refine_hist.pdbx_B_iso_mean_ligand' 113 2 'Structure model' '_refine_hist.pdbx_B_iso_mean_solvent' 114 2 'Structure model' '_refine_hist.pdbx_number_atoms_ligand' 115 2 'Structure model' '_refine_hist.pdbx_number_residues_total' 116 2 'Structure model' '_refine_ls_restr.dev_ideal' 117 2 'Structure model' '_refine_ls_restr.number' 118 2 'Structure model' '_refine_ls_restr.type' 119 2 'Structure model' '_refine_ls_shell.R_factor_R_free' 120 2 'Structure model' '_refine_ls_shell.R_factor_R_free_error' 121 2 'Structure model' '_refine_ls_shell.R_factor_R_work' 122 2 'Structure model' '_refine_ls_shell.d_res_high' 123 2 'Structure model' '_refine_ls_shell.d_res_low' 124 2 'Structure model' '_refine_ls_shell.percent_reflns_obs' 125 2 'Structure model' '_software.classification' 126 2 'Structure model' '_software.name' 127 2 'Structure model' '_software.version' 128 2 'Structure model' '_struct_asym.entity_id' 129 2 'Structure model' '_struct_conn.pdbx_dist_value' 130 2 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 131 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 132 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 133 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 134 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 135 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 136 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 137 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 138 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 139 2 'Structure model' '_struct_conn.ptnr1_symmetry' 140 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 141 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 142 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 143 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 144 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 145 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 146 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 147 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6M2P _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 5 ? A "C3'" A DT 5 ? A 1.378 1.419 -0.041 0.006 N 2 1 "O3'" B DC 3 ? B "C3'" B DC 3 ? B 1.380 1.419 -0.039 0.006 N 3 1 "O3'" D DC 3 ? A "C3'" D DC 3 ? A 1.381 1.419 -0.038 0.006 N 4 1 "O3'" D DT 5 ? B "C3'" D DT 5 ? B 1.382 1.419 -0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 4 ? A "C1'" A DC 4 ? A N1 A DC 4 ? ? 110.19 108.30 1.89 0.30 N 2 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 114.11 108.30 5.81 0.30 N 3 1 "O4'" B DC 4 ? A "C1'" B DC 4 ? A N1 B DC 4 ? ? 110.32 108.30 2.02 0.30 N 4 1 "O4'" B DC 4 ? B "C1'" B DC 4 ? B N1 B DC 4 ? ? 110.55 108.30 2.25 0.30 N 5 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 113.24 108.30 4.94 0.30 N 6 1 "O4'" C DC 4 ? A "C1'" C DC 4 ? A N1 C DC 4 ? ? 110.92 108.30 2.62 0.30 N 7 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 114.08 108.30 5.78 0.30 N 8 1 "O4'" D DC 4 ? A "C1'" D DC 4 ? A N1 D DC 4 ? ? 110.51 108.30 2.21 0.30 N 9 1 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 113.60 108.30 5.30 0.30 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 7 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.048 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 CA CA CA N N 2 CL CL CL N N 3 DA OP3 O N N 4 DA P P N N 5 DA OP1 O N N 6 DA OP2 O N N 7 DA "O5'" O N N 8 DA "C5'" C N N 9 DA "C4'" C N R 10 DA "O4'" O N N 11 DA "C3'" C N S 12 DA "O3'" O N N 13 DA "C2'" C N N 14 DA "C1'" C N R 15 DA N9 N Y N 16 DA C8 C Y N 17 DA N7 N Y N 18 DA C5 C Y N 19 DA C6 C Y N 20 DA N6 N N N 21 DA N1 N Y N 22 DA C2 C Y N 23 DA N3 N Y N 24 DA C4 C Y N 25 DA HOP3 H N N 26 DA HOP2 H N N 27 DA "H5'" H N N 28 DA "H5''" H N N 29 DA "H4'" H N N 30 DA "H3'" H N N 31 DA "HO3'" H N N 32 DA "H2'" H N N 33 DA "H2''" H N N 34 DA "H1'" H N N 35 DA H8 H N N 36 DA H61 H N N 37 DA H62 H N N 38 DA H2 H N N 39 DC OP3 O N N 40 DC P P N N 41 DC OP1 O N N 42 DC OP2 O N N 43 DC "O5'" O N N 44 DC "C5'" C N N 45 DC "C4'" C N R 46 DC "O4'" O N N 47 DC "C3'" C N S 48 DC "O3'" O N N 49 DC "C2'" C N N 50 DC "C1'" C N R 51 DC N1 N N N 52 DC C2 C N N 53 DC O2 O N N 54 DC N3 N N N 55 DC C4 C N N 56 DC N4 N N N 57 DC C5 C N N 58 DC C6 C N N 59 DC HOP3 H N N 60 DC HOP2 H N N 61 DC "H5'" H N N 62 DC "H5''" H N N 63 DC "H4'" H N N 64 DC "H3'" H N N 65 DC "HO3'" H N N 66 DC "H2'" H N N 67 DC "H2''" H N N 68 DC "H1'" H N N 69 DC H41 H N N 70 DC H42 H N N 71 DC H5 H N N 72 DC H6 H N N 73 DG OP3 O N N 74 DG P P N N 75 DG OP1 O N N 76 DG OP2 O N N 77 DG "O5'" O N N 78 DG "C5'" C N N 79 DG "C4'" C N R 80 DG "O4'" O N N 81 DG "C3'" C N S 82 DG "O3'" O N N 83 DG "C2'" C N N 84 DG "C1'" C N R 85 DG N9 N Y N 86 DG C8 C Y N 87 DG N7 N Y N 88 DG C5 C Y N 89 DG C6 C N N 90 DG O6 O N N 91 DG N1 N N N 92 DG C2 C N N 93 DG N2 N N N 94 DG N3 N N N 95 DG C4 C Y N 96 DG HOP3 H N N 97 DG HOP2 H N N 98 DG "H5'" H N N 99 DG "H5''" H N N 100 DG "H4'" H N N 101 DG "H3'" H N N 102 DG "HO3'" H N N 103 DG "H2'" H N N 104 DG "H2''" H N N 105 DG "H1'" H N N 106 DG H8 H N N 107 DG H1 H N N 108 DG H21 H N N 109 DG H22 H N N 110 DT OP3 O N N 111 DT P P N N 112 DT OP1 O N N 113 DT OP2 O N N 114 DT "O5'" O N N 115 DT "C5'" C N N 116 DT "C4'" C N R 117 DT "O4'" O N N 118 DT "C3'" C N S 119 DT "O3'" O N N 120 DT "C2'" C N N 121 DT "C1'" C N R 122 DT N1 N N N 123 DT C2 C N N 124 DT O2 O N N 125 DT N3 N N N 126 DT C4 C N N 127 DT O4 O N N 128 DT C5 C N N 129 DT C7 C N N 130 DT C6 C N N 131 DT HOP3 H N N 132 DT HOP2 H N N 133 DT "H5'" H N N 134 DT "H5''" H N N 135 DT "H4'" H N N 136 DT "H3'" H N N 137 DT "HO3'" H N N 138 DT "H2'" H N N 139 DT "H2''" H N N 140 DT "H1'" H N N 141 DT H3 H N N 142 DT H71 H N N 143 DT H72 H N N 144 DT H73 H N N 145 DT H6 H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6M2P 'double helix' 6M2P 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 A DC 4 1_555 -1.236 3.263 -0.570 -15.148 -32.007 86.449 1 B_DC1:DC4_A B 1 ? A 4 ? ? ? 1 A DC 1 1_555 B DC 4 1_555 -1.446 3.262 -0.153 -16.443 -31.267 86.433 2 A_DC1:DC4_B A 1 ? B 4 ? ? ? 1 A DA 2 1_555 B DC 3 1_555 -1.069 2.118 -1.240 -10.942 -29.363 126.882 3 A_DA2:DC3_B A 2 ? B 3 ? ? ? 1 A DT 5 1_555 D DA 6 1_555 1.321 1.528 -0.423 9.303 -43.900 64.931 4 A_DT5:DA6_D A 5 ? D 6 ? ? ? 1 B DA 6 1_555 C DT 5 1_555 -1.355 1.535 -0.302 -8.412 -44.824 65.065 5 B_DA6:DT5_C B 6 ? C 5 ? ? ? 1 A DG 7 1_555 B DT 5 1_555 -0.462 5.315 -0.265 31.358 14.396 114.037 6 A_DG7:DT5_B A 7 ? B 5 ? ? 2 1 C DG 7 1_555 D DT 5 1_555 -0.494 5.249 -0.228 29.598 14.545 115.738 7 C_DG7:DT5_D C 7 ? D 5 ? ? 2 1 D DC 1 1_555 C DC 4 1_555 -1.276 3.236 -0.341 -16.681 -33.096 87.346 8 D_DC1:DC4_C D 1 ? C 4 ? ? ? 1 C DC 1 1_555 D DC 4 1_555 -1.387 3.330 -0.012 -19.209 -33.085 86.153 9 C_DC1:DC4_D C 1 ? D 4 ? ? ? 1 C DA 2 1_555 D DC 3 1_555 -1.100 2.232 -1.338 -9.248 -32.028 125.954 10 C_DA2:DC3_D C 2 ? D 3 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 A DC 4 1_555 A DC 1 1_555 B DC 4 1_555 -1.639 3.149 -0.011 47.130 5.349 179.235 1.574 0.819 -0.015 2.674 -23.566 179.299 1 BA_DC1DC1:DC4DC4_BA B 1 ? A 4 ? A 1 ? B 4 ? 1 A DC 1 1_555 B DC 4 1_555 A DA 2 1_555 B DC 3 1_555 -1.467 -1.023 -2.948 -7.945 7.998 9.284 2.006 11.766 -1.641 35.933 35.694 14.595 2 AA_DC1DA2:DC3DC4_BB A 1 ? B 4 ? A 2 ? B 3 ? 1 A DT 5 1_555 D DA 6 1_555 B DA 6 1_555 C DT 5 1_555 0.004 5.130 3.709 0.287 -19.987 -81.305 -3.230 0.012 4.652 15.136 0.217 -83.309 3 AB_DT5DA6:DT5DA6_CD A 5 ? D 6 ? B 6 ? C 5 ? 1 D DC 1 1_555 C DC 4 1_555 C DC 1 1_555 D DC 4 1_555 -1.664 3.081 0.092 48.638 5.458 179.688 1.540 0.832 0.090 2.729 -24.319 179.716 4 DC_DC1DC1:DC4DC4_DC D 1 ? C 4 ? C 1 ? D 4 ? 1 C DC 1 1_555 D DC 4 1_555 C DA 2 1_555 D DC 3 1_555 -1.448 -1.032 -2.963 -8.183 9.341 10.354 2.237 10.330 -1.766 37.855 33.165 16.156 5 CC_DC1DA2:DC3DC4_DD C 1 ? D 4 ? C 2 ? D 3 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 AG ? ? AG ? ? 'SUBJECT OF INVESTIGATION' ? 2 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 'CALCIUM ION' CA 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JR4 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #