data_6M5J # _entry.id 6M5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M5J pdb_00006m5j 10.2210/pdb6m5j/pdb WWPDB D_1300016090 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M5J _pdbx_database_status.recvd_initial_deposition_date 2020-03-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 ? 'Chien, C.M.' 2 ? 'Satange, R.B.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 142 _citation.language ? _citation.page_first 11165 _citation.page_last 11172 _citation.title ;Structural Basis for Targeting T:T Mismatch with Triaminotriazine-Acridine Conjugate Induces a U-Shaped Head-to-Head Four-Way Junction in CTG Repeat DNA. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.0c03591 _citation.pdbx_database_id_PubMed 32478511 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chien, C.M.' 1 ? primary 'Wu, P.C.' 2 ? primary 'Satange, R.' 3 ? primary 'Chang, C.C.' 4 0000-0002-0622-019X primary 'Lai, Z.L.' 5 ? primary 'Hagler, L.D.' 6 ? primary 'Zimmerman, S.C.' 7 0000-0002-5333-3437 primary 'Hou, M.H.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 121.840 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6M5J _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.630 _cell.length_a_esd ? _cell.length_b 62.086 _cell.length_b_esd ? _cell.length_c 30.747 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*TP*TP*CP*TP*GP*CP*TP*GP*CP*TP*GP*AP*A)-3') ; 3957.583 3 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*TP*TP*CP*TP*GP*CP*AP*GP*CP*TP*GP*AP*A)-3') ; 3966.597 1 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 4 ? ? ? ? 4 non-polymer syn 'N4-[4-[(6-chloranyl-2-methoxy-acridin-9-yl)amino]butyl]-1,3,5-triazine-2,4,6-triamine' 438.913 4 ? ? ? ? 5 water nat water 18.015 167 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DT)(DG)(DC)(DT)(DG)(DC)(DT)(DG)(DA)(DA)' TTCTGCTGCTGAA A,C,D ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DT)(DG)(DC)(DA)(DG)(DC)(DT)(DG)(DA)(DA)' TTCTGCAGCTGAA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DA n 1 13 DA n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DA n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DG n 2 12 DA n 2 13 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 13 'synthetic construct' ? 32630 ? 2 1 sample 1 13 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6M5J 6M5J ? 1 ? 1 2 PDB 6M5J 6M5J ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6M5J A 1 ? 13 ? 6M5J 1 ? 13 ? 1 13 2 2 6M5J B 1 ? 13 ? 6M5J 1 ? 13 ? 1 13 3 1 6M5J C 1 ? 13 ? 6M5J 1 ? 13 ? 1 13 4 1 6M5J D 1 ? 13 ? 6M5J 1 ? 13 ? 1 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 F1R non-polymer . 'N4-[4-[(6-chloranyl-2-methoxy-acridin-9-yl)amino]butyl]-1,3,5-triazine-2,4,6-triamine' ? 'C21 H23 Cl N8 O' 438.913 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M5J _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MES (pH=6.5) 50 mM, KCl 200 mM, MPD 35%, CoCl2 10 mM' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-10-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99984 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6M5J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.640 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11117 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.400 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.027 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 37937 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.640 1.700 ? ? ? ? ? ? 1038 91.900 ? ? ? ? 0.230 ? ? ? ? ? ? ? ? 2.800 ? 1.046 ? ? 0.279 0.156 ? 1 1 0.943 ? ? 1.700 1.770 ? ? ? ? ? ? 1060 94.200 ? ? ? ? 0.208 ? ? ? ? ? ? ? ? 2.900 ? 1.023 ? ? 0.253 0.142 ? 2 1 0.944 ? ? 1.770 1.850 ? ? ? ? ? ? 1109 98.300 ? ? ? ? 0.167 ? ? ? ? ? ? ? ? 3.100 ? 1.017 ? ? 0.203 0.112 ? 3 1 0.974 ? ? 1.850 1.940 ? ? ? ? ? ? 1110 99.600 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 3.400 ? 1.029 ? ? 0.198 0.108 ? 4 1 0.974 ? ? 1.940 2.070 ? ? ? ? ? ? 1114 100.000 ? ? ? ? 0.130 ? ? ? ? ? ? ? ? 3.600 ? 1.014 ? ? 0.153 0.080 ? 5 1 0.987 ? ? 2.070 2.230 ? ? ? ? ? ? 1162 100.000 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 3.700 ? 1.007 ? ? 0.121 0.063 ? 6 1 0.993 ? ? 2.230 2.450 ? ? ? ? ? ? 1100 99.800 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 3.700 ? 1.055 ? ? 0.092 0.048 ? 7 1 0.997 ? ? 2.450 2.800 ? ? ? ? ? ? 1143 99.400 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 3.700 ? 1.042 ? ? 0.060 0.031 ? 8 1 0.997 ? ? 2.800 3.530 ? ? ? ? ? ? 1155 99.000 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 3.600 ? 1.035 ? ? 0.037 0.019 ? 9 1 0.999 ? ? 3.530 30.000 ? ? ? ? ? ? 1126 95.800 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 3.500 ? 1.009 ? ? 0.034 0.018 ? 10 1 0.998 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 56.140 _refine.B_iso_mean 29.3128 _refine.B_iso_min 17.610 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M5J _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6500 _refine.ls_d_res_low 19.2210 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10816 _refine.ls_number_reflns_R_free 522 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 50 _refine.ls_percent_reflns_R_free 4.8300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1876 _refine.ls_R_factor_R_free 0.2077 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1867 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6M4T _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.9200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.6500 _refine_hist.d_res_low 19.2210 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 1356 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 51 _refine_hist.pdbx_B_iso_mean_ligand 26.21 _refine_hist.pdbx_B_iso_mean_solvent 29.48 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1061 _refine_hist.pdbx_number_atoms_ligand 128 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6503 1.8163 . . 149 2454 47.0000 . . . 0.2276 0.0000 0.1939 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8163 2.0788 . . 127 2601 50.0000 . . . 0.2083 0.0000 0.1933 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0788 2.6180 . . 119 2648 50.0000 . . . 0.2737 0.0000 0.2210 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6180 19.2210 . . 127 2591 48.0000 . . . 0.1824 0.0000 0.1720 . . . . . . . . . . . # _struct.entry_id 6M5J _struct.title 'U shaped head to head four-way junction in d(TTCTGCTGCTGAA/TTCTGCAGCTGAA) sequence' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M5J _struct_keywords.text 'T:T mismatch, CTG repeat, four-way junction, triaminotriazine-acridine conjugate, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 1 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 E CO . CO ? ? A DG 5 A CO 101 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc2 metalc ? ? A DG 8 N7 ? ? ? 1_555 F CO . CO ? ? A DG 8 A CO 102 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc3 metalc ? ? E CO . CO ? ? ? 1_555 D DG 8 N7 ? ? A CO 101 D DG 8 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc4 metalc ? ? F CO . CO ? ? ? 1_555 D DG 5 N7 ? ? A CO 102 D DG 5 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc5 metalc ? ? B DG 5 N7 ? ? ? 1_555 H CO . CO ? ? B DG 5 B CO 101 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc6 metalc ? ? B DG 8 N7 ? ? ? 1_555 I CO . CO ? ? B DG 8 B CO 102 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc7 metalc ? ? H CO . CO ? ? ? 1_555 C DG 8 N7 ? ? B CO 101 C DG 8 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc8 metalc ? ? I CO . CO ? ? ? 1_555 C DG 5 N7 ? ? B CO 102 C DG 5 1_555 ? ? ? ? ? ? ? 2.342 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 C DA 13 N1 ? ? A DT 1 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 C DA 13 N6 ? ? A DT 1 C DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 C DA 12 N1 ? ? A DT 2 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 C DA 12 N6 ? ? A DT 2 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N3 ? ? ? 1_555 C DG 11 N1 ? ? A DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N4 ? ? ? 1_555 C DG 11 O6 ? ? A DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 O2 ? ? ? 1_555 C DG 11 N2 ? ? A DC 3 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? A DG 5 D DC 6 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 D DG 5 N2 ? ? A DC 6 D DG 5 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? A DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? A DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? A DG 11 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 C DT 2 N3 ? ? A DA 12 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 C DT 2 O4 ? ? A DA 12 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 C DT 1 N3 ? ? A DA 13 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 C DT 1 O4 ? ? A DA 13 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 1 N3 ? ? ? 1_555 D DA 13 N1 ? ? B DT 1 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 1 O4 ? ? ? 1_555 D DA 13 N6 ? ? B DT 1 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 2 N3 ? ? ? 1_555 D DA 12 N1 ? ? B DT 2 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DT 2 O4 ? ? ? 1_555 D DA 12 N6 ? ? B DT 2 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 3 N3 ? ? ? 1_555 D DG 11 N1 ? ? B DC 3 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 3 N4 ? ? ? 1_555 D DG 11 O6 ? ? B DC 3 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 3 O2 ? ? ? 1_555 D DG 11 N2 ? ? B DC 3 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 5 C DC 6 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog37 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 6 C DG 5 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog38 hydrog ? ? B DG 11 N1 ? ? ? 1_555 D DC 3 N3 ? ? B DG 11 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DG 11 N2 ? ? ? 1_555 D DC 3 O2 ? ? B DG 11 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DG 11 O6 ? ? ? 1_555 D DC 3 N4 ? ? B DG 11 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DA 12 N1 ? ? ? 1_555 D DT 2 N3 ? ? B DA 12 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DA 12 N6 ? ? ? 1_555 D DT 2 O4 ? ? B DA 12 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DA 13 N1 ? ? ? 1_555 D DT 1 N3 ? ? B DA 13 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DA 13 N6 ? ? ? 1_555 D DT 1 O4 ? ? B DA 13 D DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 8 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 9 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 9 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 9 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 101 ? 6 'binding site for residue CO A 101' AC2 Software A CO 102 ? 6 'binding site for residue CO A 102' AC3 Software A F1R 103 ? 9 'binding site for residue F1R A 103' AC4 Software B CO 101 ? 6 'binding site for residue CO B 101' AC5 Software B CO 102 ? 6 'binding site for residue CO B 102' AC6 Software B F1R 103 ? 10 'binding site for residue F1R B 103' AC7 Software C F1R 101 ? 12 'binding site for residue F1R C 101' AC8 Software D F1R 101 ? 11 'binding site for residue F1R D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 6 HOH M . ? HOH A 205 . ? 1_555 ? 3 AC1 6 HOH M . ? HOH A 216 . ? 1_555 ? 4 AC1 6 HOH O . ? HOH C 224 . ? 1_555 ? 5 AC1 6 DG D 8 ? DG D 8 . ? 1_555 ? 6 AC1 6 HOH P . ? HOH D 224 . ? 1_555 ? 7 AC2 6 DG A 8 ? DG A 8 . ? 1_555 ? 8 AC2 6 HOH M . ? HOH A 213 . ? 1_555 ? 9 AC2 6 DG D 5 ? DG D 5 . ? 1_555 ? 10 AC2 6 HOH P . ? HOH D 205 . ? 1_555 ? 11 AC2 6 HOH P . ? HOH D 207 . ? 1_555 ? 12 AC2 6 HOH P . ? HOH D 208 . ? 1_555 ? 13 AC3 9 DT A 10 ? DT A 10 . ? 1_555 ? 14 AC3 9 DG A 11 ? DG A 11 . ? 1_555 ? 15 AC3 9 HOH M . ? HOH A 209 . ? 1_555 ? 16 AC3 9 HOH M . ? HOH A 218 . ? 1_555 ? 17 AC3 9 HOH M . ? HOH A 220 . ? 1_555 ? 18 AC3 9 DG B 8 ? DG B 8 . ? 1_555 ? 19 AC3 9 DC C 3 ? DC C 3 . ? 1_555 ? 20 AC3 9 DT C 4 ? DT C 4 . ? 1_555 ? 21 AC3 9 DG C 5 ? DG C 5 . ? 1_555 ? 22 AC4 6 DG B 5 ? DG B 5 . ? 1_555 ? 23 AC4 6 HOH N . ? HOH B 204 . ? 1_555 ? 24 AC4 6 HOH N . ? HOH B 216 . ? 1_555 ? 25 AC4 6 DG C 8 ? DG C 8 . ? 1_555 ? 26 AC4 6 HOH O . ? HOH C 206 . ? 1_555 ? 27 AC4 6 HOH O . ? HOH C 208 . ? 1_555 ? 28 AC5 6 HOH M . ? HOH A 220 . ? 1_555 ? 29 AC5 6 DG B 8 ? DG B 8 . ? 1_555 ? 30 AC5 6 HOH N . ? HOH B 218 . ? 1_555 ? 31 AC5 6 DG C 5 ? DG C 5 . ? 1_555 ? 32 AC5 6 HOH O . ? HOH C 202 . ? 1_555 ? 33 AC5 6 HOH O . ? HOH C 214 . ? 1_555 ? 34 AC6 10 DG A 8 ? DG A 8 . ? 1_555 ? 35 AC6 10 DT B 10 ? DT B 10 . ? 1_555 ? 36 AC6 10 DG B 11 ? DG B 11 . ? 1_555 ? 37 AC6 10 HOH N . ? HOH B 203 . ? 1_555 ? 38 AC6 10 HOH N . ? HOH B 211 . ? 1_555 ? 39 AC6 10 HOH N . ? HOH B 221 . ? 1_555 ? 40 AC6 10 DC D 3 ? DC D 3 . ? 1_555 ? 41 AC6 10 DT D 4 ? DT D 4 . ? 1_555 ? 42 AC6 10 DG D 5 ? DG D 5 . ? 1_555 ? 43 AC6 10 HOH P . ? HOH D 207 . ? 1_555 ? 44 AC7 12 DC A 3 ? DC A 3 . ? 1_555 ? 45 AC7 12 DT A 4 ? DT A 4 . ? 1_555 ? 46 AC7 12 DG A 5 ? DG A 5 . ? 1_555 ? 47 AC7 12 HOH M . ? HOH A 215 . ? 1_555 ? 48 AC7 12 DT C 10 ? DT C 10 . ? 1_555 ? 49 AC7 12 DG C 11 ? DG C 11 . ? 1_555 ? 50 AC7 12 HOH O . ? HOH C 218 . ? 1_555 ? 51 AC7 12 HOH O . ? HOH C 219 . ? 1_555 ? 52 AC7 12 HOH O . ? HOH C 221 . ? 1_555 ? 53 AC7 12 HOH O . ? HOH C 224 . ? 1_555 ? 54 AC7 12 HOH O . ? HOH C 245 . ? 1_555 ? 55 AC7 12 DG D 8 ? DG D 8 . ? 1_555 ? 56 AC8 11 DC B 3 ? DC B 3 . ? 1_555 ? 57 AC8 11 DT B 4 ? DT B 4 . ? 1_555 ? 58 AC8 11 DG B 5 ? DG B 5 . ? 1_555 ? 59 AC8 11 HOH N . ? HOH B 206 . ? 1_555 ? 60 AC8 11 HOH N . ? HOH B 216 . ? 1_555 ? 61 AC8 11 DG C 8 ? DG C 8 . ? 1_555 ? 62 AC8 11 DT D 10 ? DT D 10 . ? 1_555 ? 63 AC8 11 DG D 11 ? DG D 11 . ? 1_555 ? 64 AC8 11 HOH P . ? HOH D 209 . ? 1_555 ? 65 AC8 11 HOH P . ? HOH D 215 . ? 1_555 ? 66 AC8 11 HOH P . ? HOH D 222 . ? 1_555 ? # _atom_sites.entry_id 6M5J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017352 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010778 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038286 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DA 13 13 13 DA DA A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DA 13 13 13 DA DA B . n C 1 1 DT 1 1 1 DT DT C . n C 1 2 DT 2 2 2 DT DT C . n C 1 3 DC 3 3 3 DC DC C . n C 1 4 DT 4 4 4 DT DT C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DT 7 7 7 DT DT C . n C 1 8 DG 8 8 8 DG DG C . n C 1 9 DC 9 9 9 DC DC C . n C 1 10 DT 10 10 10 DT DT C . n C 1 11 DG 11 11 11 DG DG C . n C 1 12 DA 12 12 12 DA DA C . n C 1 13 DA 13 13 13 DA DA C . n D 1 1 DT 1 1 1 DT DT D . n D 1 2 DT 2 2 2 DT DT D . n D 1 3 DC 3 3 3 DC DC D . n D 1 4 DT 4 4 4 DT DT D . n D 1 5 DG 5 5 5 DG DG D . n D 1 6 DC 6 6 6 DC DC D . n D 1 7 DT 7 7 7 DT DT D . n D 1 8 DG 8 8 8 DG DG D . n D 1 9 DC 9 9 9 DC DC D . n D 1 10 DT 10 10 10 DT DT D . n D 1 11 DG 11 11 11 DG DG D . n D 1 12 DA 12 12 12 DA DA D . n D 1 13 DA 13 13 13 DA DA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CO 1 101 2 CO CO A . F 3 CO 1 102 3 CO CO A . G 4 F1R 1 103 3 F1R TAZ A . H 3 CO 1 101 1 CO CO B . I 3 CO 1 102 4 CO CO B . J 4 F1R 1 103 4 F1R TAZ B . K 4 F1R 1 101 1 F1R TAZ C . L 4 F1R 1 101 2 F1R TAZ D . M 5 HOH 1 201 86 HOH HOH A . M 5 HOH 2 202 20 HOH HOH A . M 5 HOH 3 203 134 HOH HOH A . M 5 HOH 4 204 126 HOH HOH A . M 5 HOH 5 205 146 HOH HOH A . M 5 HOH 6 206 50 HOH HOH A . M 5 HOH 7 207 173 HOH HOH A . M 5 HOH 8 208 53 HOH HOH A . M 5 HOH 9 209 21 HOH HOH A . M 5 HOH 10 210 60 HOH HOH A . M 5 HOH 11 211 77 HOH HOH A . M 5 HOH 12 212 92 HOH HOH A . M 5 HOH 13 213 141 HOH HOH A . M 5 HOH 14 214 13 HOH HOH A . M 5 HOH 15 215 73 HOH HOH A . M 5 HOH 16 216 145 HOH HOH A . M 5 HOH 17 217 24 HOH HOH A . M 5 HOH 18 218 63 HOH HOH A . M 5 HOH 19 219 121 HOH HOH A . M 5 HOH 20 220 1 HOH HOH A . M 5 HOH 21 221 44 HOH HOH A . M 5 HOH 22 222 84 HOH HOH A . M 5 HOH 23 223 130 HOH HOH A . M 5 HOH 24 224 138 HOH HOH A . M 5 HOH 25 225 147 HOH HOH A . M 5 HOH 26 226 99 HOH HOH A . M 5 HOH 27 227 156 HOH HOH A . M 5 HOH 28 228 118 HOH HOH A . M 5 HOH 29 229 46 HOH HOH A . M 5 HOH 30 230 177 HOH HOH A . M 5 HOH 31 231 104 HOH HOH A . M 5 HOH 32 232 192 HOH HOH A . M 5 HOH 33 233 186 HOH HOH A . M 5 HOH 34 234 83 HOH HOH A . M 5 HOH 35 235 172 HOH HOH A . M 5 HOH 36 236 179 HOH HOH A . M 5 HOH 37 237 38 HOH HOH A . M 5 HOH 38 238 58 HOH HOH A . N 5 HOH 1 201 95 HOH HOH B . N 5 HOH 2 202 27 HOH HOH B . N 5 HOH 3 203 57 HOH HOH B . N 5 HOH 4 204 4 HOH HOH B . N 5 HOH 5 205 81 HOH HOH B . N 5 HOH 6 206 15 HOH HOH B . N 5 HOH 7 207 11 HOH HOH B . N 5 HOH 8 208 154 HOH HOH B . N 5 HOH 9 209 176 HOH HOH B . N 5 HOH 10 210 162 HOH HOH B . N 5 HOH 11 211 37 HOH HOH B . N 5 HOH 12 212 91 HOH HOH B . N 5 HOH 13 213 40 HOH HOH B . N 5 HOH 14 214 163 HOH HOH B . N 5 HOH 15 215 68 HOH HOH B . N 5 HOH 16 216 2 HOH HOH B . N 5 HOH 17 217 28 HOH HOH B . N 5 HOH 18 218 140 HOH HOH B . N 5 HOH 19 219 109 HOH HOH B . N 5 HOH 20 220 189 HOH HOH B . N 5 HOH 21 221 18 HOH HOH B . N 5 HOH 22 222 188 HOH HOH B . N 5 HOH 23 223 158 HOH HOH B . N 5 HOH 24 224 107 HOH HOH B . N 5 HOH 25 225 102 HOH HOH B . N 5 HOH 26 226 114 HOH HOH B . N 5 HOH 27 227 31 HOH HOH B . N 5 HOH 28 228 74 HOH HOH B . N 5 HOH 29 229 48 HOH HOH B . N 5 HOH 30 230 26 HOH HOH B . N 5 HOH 31 231 42 HOH HOH B . N 5 HOH 32 232 33 HOH HOH B . N 5 HOH 33 233 164 HOH HOH B . N 5 HOH 34 234 97 HOH HOH B . N 5 HOH 35 235 157 HOH HOH B . N 5 HOH 36 236 132 HOH HOH B . N 5 HOH 37 237 178 HOH HOH B . N 5 HOH 38 238 165 HOH HOH B . N 5 HOH 39 239 183 HOH HOH B . N 5 HOH 40 240 168 HOH HOH B . N 5 HOH 41 241 160 HOH HOH B . N 5 HOH 42 242 184 HOH HOH B . O 5 HOH 1 201 133 HOH HOH C . O 5 HOH 2 202 139 HOH HOH C . O 5 HOH 3 203 69 HOH HOH C . O 5 HOH 4 204 25 HOH HOH C . O 5 HOH 5 205 64 HOH HOH C . O 5 HOH 6 206 144 HOH HOH C . O 5 HOH 7 207 9 HOH HOH C . O 5 HOH 8 208 143 HOH HOH C . O 5 HOH 9 209 103 HOH HOH C . O 5 HOH 10 210 150 HOH HOH C . O 5 HOH 11 211 41 HOH HOH C . O 5 HOH 12 212 110 HOH HOH C . O 5 HOH 13 213 88 HOH HOH C . O 5 HOH 14 214 3 HOH HOH C . O 5 HOH 15 215 30 HOH HOH C . O 5 HOH 16 216 171 HOH HOH C . O 5 HOH 17 217 159 HOH HOH C . O 5 HOH 18 218 17 HOH HOH C . O 5 HOH 19 219 49 HOH HOH C . O 5 HOH 20 220 185 HOH HOH C . O 5 HOH 21 221 56 HOH HOH C . O 5 HOH 22 222 55 HOH HOH C . O 5 HOH 23 223 12 HOH HOH C . O 5 HOH 24 224 6 HOH HOH C . O 5 HOH 25 225 180 HOH HOH C . O 5 HOH 26 226 167 HOH HOH C . O 5 HOH 27 227 155 HOH HOH C . O 5 HOH 28 228 113 HOH HOH C . O 5 HOH 29 229 151 HOH HOH C . O 5 HOH 30 230 101 HOH HOH C . O 5 HOH 31 231 191 HOH HOH C . O 5 HOH 32 232 96 HOH HOH C . O 5 HOH 33 233 90 HOH HOH C . O 5 HOH 34 234 16 HOH HOH C . O 5 HOH 35 235 32 HOH HOH C . O 5 HOH 36 236 100 HOH HOH C . O 5 HOH 37 237 170 HOH HOH C . O 5 HOH 38 238 169 HOH HOH C . O 5 HOH 39 239 182 HOH HOH C . O 5 HOH 40 240 149 HOH HOH C . O 5 HOH 41 241 106 HOH HOH C . O 5 HOH 42 242 161 HOH HOH C . O 5 HOH 43 243 43 HOH HOH C . O 5 HOH 44 244 153 HOH HOH C . O 5 HOH 45 245 187 HOH HOH C . O 5 HOH 46 246 34 HOH HOH C . O 5 HOH 47 247 181 HOH HOH C . P 5 HOH 1 201 51 HOH HOH D . P 5 HOH 2 202 66 HOH HOH D . P 5 HOH 3 203 72 HOH HOH D . P 5 HOH 4 204 137 HOH HOH D . P 5 HOH 5 205 142 HOH HOH D . P 5 HOH 6 206 85 HOH HOH D . P 5 HOH 7 207 5 HOH HOH D . P 5 HOH 8 208 7 HOH HOH D . P 5 HOH 9 209 47 HOH HOH D . P 5 HOH 10 210 10 HOH HOH D . P 5 HOH 11 211 61 HOH HOH D . P 5 HOH 12 212 135 HOH HOH D . P 5 HOH 13 213 148 HOH HOH D . P 5 HOH 14 214 14 HOH HOH D . P 5 HOH 15 215 62 HOH HOH D . P 5 HOH 16 216 19 HOH HOH D . P 5 HOH 17 217 45 HOH HOH D . P 5 HOH 18 218 122 HOH HOH D . P 5 HOH 19 219 76 HOH HOH D . P 5 HOH 20 220 94 HOH HOH D . P 5 HOH 21 221 129 HOH HOH D . P 5 HOH 22 222 108 HOH HOH D . P 5 HOH 23 223 127 HOH HOH D . P 5 HOH 24 224 8 HOH HOH D . P 5 HOH 25 225 29 HOH HOH D . P 5 HOH 26 226 23 HOH HOH D . P 5 HOH 27 227 71 HOH HOH D . P 5 HOH 28 228 87 HOH HOH D . P 5 HOH 29 229 120 HOH HOH D . P 5 HOH 30 230 22 HOH HOH D . P 5 HOH 31 231 35 HOH HOH D . P 5 HOH 32 232 59 HOH HOH D . P 5 HOH 33 233 174 HOH HOH D . P 5 HOH 34 234 125 HOH HOH D . P 5 HOH 35 235 117 HOH HOH D . P 5 HOH 36 236 82 HOH HOH D . P 5 HOH 37 237 175 HOH HOH D . P 5 HOH 38 238 39 HOH HOH D . P 5 HOH 39 239 105 HOH HOH D . P 5 HOH 40 240 190 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6080 ? 1 MORE -66 ? 1 'SSA (A^2)' 8900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 5 ? A DG 5 ? 1_555 CO ? E CO . ? A CO 101 ? 1_555 N7 ? D DG 8 ? D DG 8 ? 1_555 172.8 ? 2 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? F CO . ? A CO 102 ? 1_555 N7 ? D DG 5 ? D DG 5 ? 1_555 167.8 ? 3 N7 ? B DG 5 ? B DG 5 ? 1_555 CO ? H CO . ? B CO 101 ? 1_555 N7 ? C DG 8 ? C DG 8 ? 1_555 153.3 ? 4 N7 ? B DG 8 ? B DG 8 ? 1_555 CO ? I CO . ? B CO 102 ? 1_555 N7 ? C DG 5 ? C DG 5 ? 1_555 140.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-15 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_dist_value' 4 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 6M5J _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CO A CO 101 ? ? O A HOH 216 ? ? 1.60 2 1 O A HOH 219 ? ? O A HOH 228 ? ? 2.14 3 1 O D HOH 218 ? ? O D HOH 235 ? ? 2.19 4 1 O A HOH 209 ? ? O A HOH 220 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O4 C DT 4 ? ? 1_555 OP2 D DT 1 ? ? 2_556 1.93 2 1 O C HOH 229 ? ? 1_555 O C HOH 240 ? ? 2_646 1.96 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A DT 1 ? P ? A DT 1 P 2 1 Y 0 B DT 1 ? OP1 ? B DT 1 OP1 3 1 Y 0 C DT 1 ? "O5'" ? C DT 1 "O5'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 F1R CAI C Y N 145 F1R CAJ C Y N 146 F1R CAK C Y N 147 F1R CAL C Y N 148 F1R CAM C Y N 149 F1R CAN C Y N 150 F1R CAO C Y N 151 F1R CAP C Y N 152 F1R CAQ C Y N 153 F1R CAR C Y N 154 F1R CAS C Y N 155 F1R CAT C N N 156 F1R CAU C Y N 157 F1R CAV C Y N 158 F1R CAW C Y N 159 F1R CAX C Y N 160 F1R CAY C Y N 161 F1R CBB C N N 162 F1R CBC C N N 163 F1R CBD C N N 164 F1R CBE C N N 165 F1R NAA N Y N 166 F1R NAB N N N 167 F1R NAC N N N 168 F1R NAD N Y N 169 F1R NAE N N N 170 F1R NAF N Y N 171 F1R NAG N N N 172 F1R NAH N Y N 173 F1R OAZ O N N 174 F1R CLA CL N N 175 F1R H1 H N N 176 F1R H2 H N N 177 F1R H3 H N N 178 F1R H4 H N N 179 F1R H5 H N N 180 F1R H6 H N N 181 F1R H7 H N N 182 F1R H8 H N N 183 F1R H9 H N N 184 F1R H10 H N N 185 F1R H11 H N N 186 F1R H12 H N N 187 F1R H13 H N N 188 F1R H14 H N N 189 F1R H15 H N N 190 F1R H16 H N N 191 F1R H17 H N N 192 F1R H18 H N N 193 F1R H19 H N N 194 F1R H20 H N N 195 F1R H21 H N N 196 F1R H22 H N N 197 F1R H23 H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 F1R CLA CAI sing N N 150 F1R CAN CAI doub Y N 151 F1R CAN CAM sing Y N 152 F1R CAI CAJ sing Y N 153 F1R NAA CAM doub Y N 154 F1R NAA CAO sing Y N 155 F1R CAV CAO doub Y N 156 F1R CAV CAU sing Y N 157 F1R CAM CAL sing Y N 158 F1R CAO CAP sing Y N 159 F1R CAU CAS doub Y N 160 F1R CAJ CAK doub Y N 161 F1R CAL CAK sing Y N 162 F1R CAL CAQ doub Y N 163 F1R CAP CAQ sing Y N 164 F1R CAP CAR doub Y N 165 F1R CAS CAR sing Y N 166 F1R CAS OAZ sing N N 167 F1R CAQ NAB sing N N 168 F1R NAG CAY sing N N 169 F1R OAZ CAT sing N N 170 F1R NAB CBB sing N N 171 F1R CAY NAH doub Y N 172 F1R CAY NAF sing Y N 173 F1R NAH CAW sing Y N 174 F1R NAF CAX doub Y N 175 F1R CBB CBC sing N N 176 F1R CAW NAC sing N N 177 F1R CAW NAD doub Y N 178 F1R CAX NAD sing Y N 179 F1R CAX NAE sing N N 180 F1R CBC CBD sing N N 181 F1R NAE CBE sing N N 182 F1R CBD CBE sing N N 183 F1R CAJ H1 sing N N 184 F1R CAK H2 sing N N 185 F1R CAN H3 sing N N 186 F1R CAR H4 sing N N 187 F1R CAT H5 sing N N 188 F1R CAT H6 sing N N 189 F1R CAT H7 sing N N 190 F1R CAU H8 sing N N 191 F1R CAV H9 sing N N 192 F1R CBB H10 sing N N 193 F1R CBB H11 sing N N 194 F1R CBC H12 sing N N 195 F1R CBC H13 sing N N 196 F1R CBD H14 sing N N 197 F1R CBD H15 sing N N 198 F1R CBE H16 sing N N 199 F1R CBE H17 sing N N 200 F1R NAB H18 sing N N 201 F1R NAC H19 sing N N 202 F1R NAC H20 sing N N 203 F1R NAE H21 sing N N 204 F1R NAG H22 sing N N 205 F1R NAG H23 sing N N 206 HOH O H1 sing N N 207 HOH O H2 sing N N 208 # _ndb_struct_conf_na.entry_id 6M5J _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 C DA 13 1_555 -0.494 0.169 -0.018 3.564 -16.321 0.137 1 A_DT1:DA13_C A 1 ? C 13 ? 20 1 1 A DT 2 1_555 C DA 12 1_555 -0.181 -0.010 -0.026 -0.333 -23.452 2.888 2 A_DT2:DA12_C A 2 ? C 12 ? 20 1 1 A DC 3 1_555 C DG 11 1_555 0.096 -0.106 -0.495 9.852 -17.697 4.348 3 A_DC3:DG11_C A 3 ? C 11 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 0.061 -0.039 -0.132 -6.506 2.872 0.220 4 A_DG5:DC6_B A 5 ? B 6 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 -0.169 0.037 0.004 -2.881 3.855 1.935 5 A_DC6:DG5_B A 6 ? B 5 ? 19 1 1 A DG 8 1_555 B DC 9 1_555 0.111 -0.541 -0.494 -2.583 -9.730 1.501 6 A_DG8:DC9_B A 8 ? B 9 ? 19 1 1 A DC 9 1_555 B DG 8 1_555 0.245 -0.101 0.063 -2.953 -6.122 -3.705 7 A_DC9:DG8_B A 9 ? B 8 ? 19 1 1 A DG 11 1_555 C DC 3 1_555 -0.155 -0.247 -0.029 1.367 -18.618 1.271 8 A_DG11:DC3_C A 11 ? C 3 ? 19 1 1 A DA 12 1_555 C DT 2 1_555 0.145 -0.554 0.192 3.552 -14.629 -8.307 9 A_DA12:DT2_C A 12 ? C 2 ? 20 1 1 A DA 13 1_555 C DT 1 1_555 0.109 -0.564 0.693 14.062 -10.284 -2.480 10 A_DA13:DT1_C A 13 ? C 1 ? 20 1 1 B DT 1 1_555 D DA 13 1_555 -0.463 0.531 0.330 1.202 -16.041 4.941 11 B_DT1:DA13_D B 1 ? D 13 ? 20 1 1 B DT 2 1_555 D DA 12 1_555 -0.110 0.304 -0.130 3.460 -21.313 7.919 12 B_DT2:DA12_D B 2 ? D 12 ? 20 1 1 B DC 3 1_555 D DG 11 1_555 0.347 -0.075 -0.492 9.267 -16.845 2.563 13 B_DC3:DG11_D B 3 ? D 11 ? 19 1 1 B DG 11 1_555 D DC 3 1_555 -0.268 -0.193 -0.091 3.131 -15.390 1.084 14 B_DG11:DC3_D B 11 ? D 3 ? 19 1 1 B DA 12 1_555 D DT 2 1_555 0.105 -0.099 0.280 5.326 -13.710 -5.177 15 B_DA12:DT2_D B 12 ? D 2 ? 20 1 1 B DA 13 1_555 D DT 1 1_555 -0.530 -0.513 0.828 11.405 -7.525 6.455 16 B_DA13:DT1_D B 13 ? D 1 ? 20 1 1 C DG 5 1_555 D DC 6 1_555 -0.428 -0.295 -0.453 -9.126 5.320 -4.469 17 C_DG5:DC6_D C 5 ? D 6 ? 19 1 1 C DC 6 1_555 D DG 5 1_555 0.434 -0.216 -0.467 1.032 1.805 -2.170 18 C_DC6:DG5_D C 6 ? D 5 ? 19 1 1 C DG 8 1_555 D DC 9 1_555 -0.195 -0.065 0.283 4.216 -2.176 -0.520 19 C_DG8:DC9_D C 8 ? D 9 ? 19 1 1 C DC 9 1_555 D DG 8 1_555 0.478 0.425 0.604 -2.377 -4.428 -3.290 20 C_DC9:DG8_D C 9 ? D 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 C DA 13 1_555 A DT 2 1_555 C DA 12 1_555 -0.253 0.177 3.374 1.972 -0.136 36.181 0.304 0.692 3.355 -0.219 -3.172 36.233 1 AA_DT1DT2:DA12DA13_CC A 1 ? C 13 ? A 2 ? C 12 ? 1 A DT 2 1_555 C DA 12 1_555 A DC 3 1_555 C DG 11 1_555 0.677 2.106 3.051 9.213 -1.165 45.045 2.794 -0.115 3.073 -1.502 -11.877 45.943 2 AA_DT2DC3:DG11DA12_CC A 2 ? C 12 ? A 3 ? C 11 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.160 -0.533 3.322 -0.941 8.110 23.162 -3.731 -0.664 2.958 19.440 2.257 24.540 3 AA_DG5DC6:DG5DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 -0.198 -1.836 3.399 -3.828 -6.286 44.003 -1.797 -0.118 3.619 -8.320 5.066 44.584 4 AA_DG8DC9:DG8DC9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A DG 11 1_555 C DC 3 1_555 A DA 12 1_555 C DT 2 1_555 -0.882 2.040 3.203 -6.067 -8.195 45.865 3.202 0.633 2.906 -10.365 7.673 46.925 5 AA_DG11DA12:DT2DC3_CC A 11 ? C 3 ? A 12 ? C 2 ? 1 A DA 12 1_555 C DT 2 1_555 A DA 13 1_555 C DT 1 1_555 0.562 0.160 3.054 -4.974 -0.337 35.056 0.309 -1.598 2.947 -0.556 8.206 35.398 6 AA_DA12DA13:DT1DT2_CC A 12 ? C 2 ? A 13 ? C 1 ? 1 B DT 1 1_555 D DA 13 1_555 B DT 2 1_555 D DA 12 1_555 -0.226 0.124 3.114 3.410 0.305 35.862 0.160 0.826 3.081 0.495 -5.523 36.019 7 BB_DT1DT2:DA12DA13_DD B 1 ? D 13 ? B 2 ? D 12 ? 1 B DT 2 1_555 D DA 12 1_555 B DC 3 1_555 D DG 11 1_555 0.488 2.079 3.158 8.079 -0.031 43.232 2.781 0.096 3.193 -0.041 -10.852 43.945 8 BB_DT2DC3:DG11DA12_DD B 2 ? D 12 ? B 3 ? D 11 ? 1 B DG 11 1_555 D DC 3 1_555 B DA 12 1_555 D DT 2 1_555 -0.669 1.980 3.227 -5.060 -8.618 45.666 3.179 0.445 2.883 -10.950 6.429 46.690 9 BB_DG11DA12:DT2DC3_DD B 11 ? D 3 ? B 12 ? D 2 ? 1 B DA 12 1_555 D DT 2 1_555 B DA 13 1_555 D DT 1 1_555 0.693 0.037 3.075 -3.187 -0.824 29.216 0.238 -2.000 2.982 -1.627 6.294 29.397 10 BB_DA12DA13:DT1DT2_DD B 12 ? D 2 ? B 13 ? D 1 ? 1 C DG 5 1_555 D DC 6 1_555 C DC 6 1_555 D DG 5 1_555 0.145 -0.540 3.174 -0.137 4.697 25.761 -2.409 -0.355 3.028 10.424 0.304 26.179 11 CC_DG5DC6:DG5DC6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DG 8 1_555 D DC 9 1_555 C DC 9 1_555 D DG 8 1_555 -0.145 -1.427 3.874 -1.027 -5.391 38.707 -1.346 0.066 4.032 -8.084 1.540 39.079 12 CC_DG8DC9:DG8DC9_DD C 8 ? D 9 ? C 9 ? D 8 ? # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CO ? ? CO ? ? 'SUBJECT OF INVESTIGATION' ? 2 F1R ? ? F1R ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (II) ION' CO 4 'N4-[4-[(6-chloranyl-2-methoxy-acridin-9-yl)amino]butyl]-1,3,5-triazine-2,4,6-triamine' F1R 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6M4T _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #