data_6M5T # _entry.id 6M5T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M5T pdb_00006m5t 10.2210/pdb6m5t/pdb WWPDB D_1300011062 ? ? EMDB EMD-30092 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The coordinate of the nuclease domain of the apo terminase complex' _pdbx_database_related.db_id EMD-30092 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M5T _pdbx_database_status.recvd_initial_deposition_date 2020-03-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, Y.X.' 1 ? 'Yang, P.' 2 ? 'Wang, N.' 3 ? 'Chen, Z.H.' 4 ? 'Zhou, Z.H.' 5 ? 'Rao, Z.H.' 6 ? 'Wang, X.X.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CN _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Cell' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1674-8018 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 339 _citation.page_last 351 _citation.title 'Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s13238-020-00710-0 _citation.pdbx_database_id_PubMed 32328903 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, Y.' 1 ? primary 'Yang, P.' 2 ? primary 'Wang, N.' 3 ? primary 'Chen, Z.' 4 ? primary 'Su, D.' 5 ? primary 'Zhou, Z.H.' 6 ? primary 'Rao, Z.' 7 ? primary 'Wang, X.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6M5T _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Tripartite terminase subunit 3' _entity.formula_weight 30918.906 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.-.- _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Terminase large subunit' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMTGDDRPVLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVDPAFTANTRASGTGVAVVGRY RDDYIIFALEHFFLRALTGSAPADIARCVVHSLTQVLALHPGAFRGVRVAVEGNSSQDSAVAIATHVHTEMHRLLASEGA DAGSGPELLFYHCEPPGSAVLYPFFLLNKQKTPAFEHFIKKFNSGGVMASQEIVSATVRLQTDPVEYLLEQLNNLTETVS PNTDVRTYSGKRNGASDDLMVAVIMAIYLAAQAGPPHTFAPITRVS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMTGDDRPVLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVDPAFTANTRASGTGVAVVGRY RDDYIIFALEHFFLRALTGSAPADIARCVVHSLTQVLALHPGAFRGVRVAVEGNSSQDSAVAIATHVHTEMHRLLASEGA DAGSGPELLFYHCEPPGSAVLYPFFLLNKQKTPAFEHFIKKFNSGGVMASQEIVSATVRLQTDPVEYLLEQLNNLTETVS PNTDVRTYSGKRNGASDDLMVAVIMAIYLAAQAGPPHTFAPITRVS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 THR n 1 23 GLY n 1 24 ASP n 1 25 ASP n 1 26 ARG n 1 27 PRO n 1 28 VAL n 1 29 LEU n 1 30 THR n 1 31 LYS n 1 32 SER n 1 33 ALA n 1 34 GLY n 1 35 GLU n 1 36 ARG n 1 37 PHE n 1 38 LEU n 1 39 LEU n 1 40 TYR n 1 41 ARG n 1 42 PRO n 1 43 SER n 1 44 THR n 1 45 THR n 1 46 THR n 1 47 ASN n 1 48 SER n 1 49 GLY n 1 50 LEU n 1 51 MET n 1 52 ALA n 1 53 PRO n 1 54 ASP n 1 55 LEU n 1 56 TYR n 1 57 VAL n 1 58 TYR n 1 59 VAL n 1 60 ASP n 1 61 PRO n 1 62 ALA n 1 63 PHE n 1 64 THR n 1 65 ALA n 1 66 ASN n 1 67 THR n 1 68 ARG n 1 69 ALA n 1 70 SER n 1 71 GLY n 1 72 THR n 1 73 GLY n 1 74 VAL n 1 75 ALA n 1 76 VAL n 1 77 VAL n 1 78 GLY n 1 79 ARG n 1 80 TYR n 1 81 ARG n 1 82 ASP n 1 83 ASP n 1 84 TYR n 1 85 ILE n 1 86 ILE n 1 87 PHE n 1 88 ALA n 1 89 LEU n 1 90 GLU n 1 91 HIS n 1 92 PHE n 1 93 PHE n 1 94 LEU n 1 95 ARG n 1 96 ALA n 1 97 LEU n 1 98 THR n 1 99 GLY n 1 100 SER n 1 101 ALA n 1 102 PRO n 1 103 ALA n 1 104 ASP n 1 105 ILE n 1 106 ALA n 1 107 ARG n 1 108 CYS n 1 109 VAL n 1 110 VAL n 1 111 HIS n 1 112 SER n 1 113 LEU n 1 114 THR n 1 115 GLN n 1 116 VAL n 1 117 LEU n 1 118 ALA n 1 119 LEU n 1 120 HIS n 1 121 PRO n 1 122 GLY n 1 123 ALA n 1 124 PHE n 1 125 ARG n 1 126 GLY n 1 127 VAL n 1 128 ARG n 1 129 VAL n 1 130 ALA n 1 131 VAL n 1 132 GLU n 1 133 GLY n 1 134 ASN n 1 135 SER n 1 136 SER n 1 137 GLN n 1 138 ASP n 1 139 SER n 1 140 ALA n 1 141 VAL n 1 142 ALA n 1 143 ILE n 1 144 ALA n 1 145 THR n 1 146 HIS n 1 147 VAL n 1 148 HIS n 1 149 THR n 1 150 GLU n 1 151 MET n 1 152 HIS n 1 153 ARG n 1 154 LEU n 1 155 LEU n 1 156 ALA n 1 157 SER n 1 158 GLU n 1 159 GLY n 1 160 ALA n 1 161 ASP n 1 162 ALA n 1 163 GLY n 1 164 SER n 1 165 GLY n 1 166 PRO n 1 167 GLU n 1 168 LEU n 1 169 LEU n 1 170 PHE n 1 171 TYR n 1 172 HIS n 1 173 CYS n 1 174 GLU n 1 175 PRO n 1 176 PRO n 1 177 GLY n 1 178 SER n 1 179 ALA n 1 180 VAL n 1 181 LEU n 1 182 TYR n 1 183 PRO n 1 184 PHE n 1 185 PHE n 1 186 LEU n 1 187 LEU n 1 188 ASN n 1 189 LYS n 1 190 GLN n 1 191 LYS n 1 192 THR n 1 193 PRO n 1 194 ALA n 1 195 PHE n 1 196 GLU n 1 197 HIS n 1 198 PHE n 1 199 ILE n 1 200 LYS n 1 201 LYS n 1 202 PHE n 1 203 ASN n 1 204 SER n 1 205 GLY n 1 206 GLY n 1 207 VAL n 1 208 MET n 1 209 ALA n 1 210 SER n 1 211 GLN n 1 212 GLU n 1 213 ILE n 1 214 VAL n 1 215 SER n 1 216 ALA n 1 217 THR n 1 218 VAL n 1 219 ARG n 1 220 LEU n 1 221 GLN n 1 222 THR n 1 223 ASP n 1 224 PRO n 1 225 VAL n 1 226 GLU n 1 227 TYR n 1 228 LEU n 1 229 LEU n 1 230 GLU n 1 231 GLN n 1 232 LEU n 1 233 ASN n 1 234 ASN n 1 235 LEU n 1 236 THR n 1 237 GLU n 1 238 THR n 1 239 VAL n 1 240 SER n 1 241 PRO n 1 242 ASN n 1 243 THR n 1 244 ASP n 1 245 VAL n 1 246 ARG n 1 247 THR n 1 248 TYR n 1 249 SER n 1 250 GLY n 1 251 LYS n 1 252 ARG n 1 253 ASN n 1 254 GLY n 1 255 ALA n 1 256 SER n 1 257 ASP n 1 258 ASP n 1 259 LEU n 1 260 MET n 1 261 VAL n 1 262 ALA n 1 263 VAL n 1 264 ILE n 1 265 MET n 1 266 ALA n 1 267 ILE n 1 268 TYR n 1 269 LEU n 1 270 ALA n 1 271 ALA n 1 272 GLN n 1 273 ALA n 1 274 GLY n 1 275 PRO n 1 276 PRO n 1 277 HIS n 1 278 THR n 1 279 PHE n 1 280 ALA n 1 281 PRO n 1 282 ILE n 1 283 THR n 1 284 ARG n 1 285 VAL n 1 286 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 286 _entity_src_gen.gene_src_common_name HHV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TRM3, UL15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 17 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human alphaherpesvirus 1 strain 17' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10299 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRM3_HHV11 _struct_ref.pdbx_db_accession P04295 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TGDDRPVLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVDPAFTANTRASGTGVAVVGRYRDDYIIFALEHFFLRALTGSA PADIARCVVHSLTQVLALHPGAFRGVRVAVEGNSSQDSAVAIATHVHTEMHRLLASEGADAGSGPELLFYHCEPPGSAVL YPFFLLNKQKTPAFEHFIKKFNSGGVMASQEIVSATVRLQTDPVEYLLEQLNNLTETVSPNTDVRTYSGKRNGASDDLMV AVIMAIYLAAQAGPPHTFAPITRVS ; _struct_ref.pdbx_align_begin 471 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M5T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04295 _struct_ref_seq.db_align_beg 471 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 735 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 471 _struct_ref_seq.pdbx_auth_seq_align_end 735 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6M5T MET A 1 ? UNP P04295 ? ? 'initiating methionine' 450 1 1 6M5T GLY A 2 ? UNP P04295 ? ? 'expression tag' 451 2 1 6M5T SER A 3 ? UNP P04295 ? ? 'expression tag' 452 3 1 6M5T SER A 4 ? UNP P04295 ? ? 'expression tag' 453 4 1 6M5T HIS A 5 ? UNP P04295 ? ? 'expression tag' 454 5 1 6M5T HIS A 6 ? UNP P04295 ? ? 'expression tag' 455 6 1 6M5T HIS A 7 ? UNP P04295 ? ? 'expression tag' 456 7 1 6M5T HIS A 8 ? UNP P04295 ? ? 'expression tag' 457 8 1 6M5T HIS A 9 ? UNP P04295 ? ? 'expression tag' 458 9 1 6M5T HIS A 10 ? UNP P04295 ? ? 'expression tag' 459 10 1 6M5T SER A 11 ? UNP P04295 ? ? 'expression tag' 460 11 1 6M5T SER A 12 ? UNP P04295 ? ? 'expression tag' 461 12 1 6M5T GLY A 13 ? UNP P04295 ? ? 'expression tag' 462 13 1 6M5T LEU A 14 ? UNP P04295 ? ? 'expression tag' 463 14 1 6M5T VAL A 15 ? UNP P04295 ? ? 'expression tag' 464 15 1 6M5T PRO A 16 ? UNP P04295 ? ? 'expression tag' 465 16 1 6M5T ARG A 17 ? UNP P04295 ? ? 'expression tag' 466 17 1 6M5T GLY A 18 ? UNP P04295 ? ? 'expression tag' 467 18 1 6M5T SER A 19 ? UNP P04295 ? ? 'expression tag' 468 19 1 6M5T HIS A 20 ? UNP P04295 ? ? 'expression tag' 469 20 1 6M5T MET A 21 ? UNP P04295 ? ? 'expression tag' 470 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M5T _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 55.77 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M5T _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.6 _refine.ls_d_res_low 3.6 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34293 _refine.ls_number_reflns_R_free 1718 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5 _refine.ls_percent_reflns_R_free 5.010 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.203 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 3N4P' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.480 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.290 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.46 _refine_hist.d_res_low 19.80 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1715 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1715 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 5243 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.350 ? 7126 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 16.912 ? 1853 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.092 ? 826 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 913 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON MICROSCOPY' 2.4580 2.5298 . . 135 2560 95.00 . . . 0.3066 . 0.2576 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 2.5298 2.6113 . . 140 2660 99.00 . . . 0.3136 . 0.2306 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 2.6113 2.7044 . . 141 2670 100.00 . . . 0.2550 . 0.2179 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 2.7044 2.8124 . . 141 2677 100.00 . . . 0.2698 . 0.2227 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 2.8124 2.9400 . . 143 2706 100.00 . . . 0.2751 . 0.2298 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 2.9400 3.0944 . . 141 2675 100.00 . . . 0.3151 . 0.2348 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 3.0944 3.2875 . . 141 2703 100.00 . . . 0.3009 . 0.2364 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 3.2875 3.5400 . . 144 2703 100.00 . . . 0.2706 . 0.2050 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 3.5400 3.8938 . . 145 2751 100.00 . . . 0.2526 . 0.1887 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 3.8938 4.4517 . . 143 2737 100.00 . . . 0.2026 . 0.1675 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 4.4517 5.5876 . . 148 2795 100.00 . . . 0.2314 . 0.1800 . . . . . . . . . . . 'ELECTRON MICROSCOPY' 5.5876 19.7992 . . 156 2938 100.00 . . . 0.2171 . 0.2147 . . . . . . . . . . . # _struct.entry_id 6M5T _struct.title 'The coordinate of the nuclease domain of the apo terminase complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M5T _struct_keywords.text 'HSV-1, nuclease domain, apo terminase complex, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 30 ? TYR A 40 ? THR A 479 TYR A 489 1 ? 11 HELX_P HELX_P2 AA2 THR A 46 ? MET A 51 ? THR A 495 MET A 500 5 ? 6 HELX_P HELX_P3 AA3 SER A 100 ? HIS A 120 ? SER A 549 HIS A 569 1 ? 21 HELX_P HELX_P4 AA4 SER A 136 ? GLU A 158 ? SER A 585 GLU A 607 1 ? 23 HELX_P HELX_P5 AA5 GLN A 190 ? ASN A 203 ? GLN A 639 ASN A 652 1 ? 14 HELX_P HELX_P6 AA6 ASP A 223 ? ASN A 233 ? ASP A 672 ASN A 682 1 ? 11 HELX_P HELX_P7 AA7 ASP A 257 ? ALA A 271 ? ASP A 706 ALA A 720 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 169 ? PHE A 170 ? LEU A 618 PHE A 619 AA1 2 GLY A 126 ? VAL A 131 ? GLY A 575 VAL A 580 AA1 3 ASP A 54 ? ASP A 60 ? ASP A 503 ASP A 509 AA1 4 GLY A 73 ? ARG A 79 ? GLY A 522 ARG A 528 AA1 5 TYR A 84 ? LEU A 89 ? TYR A 533 LEU A 538 AA1 6 MET A 208 ? VAL A 214 ? MET A 657 VAL A 663 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 169 ? O LEU A 618 N VAL A 127 ? N VAL A 576 AA1 2 3 O ARG A 128 ? O ARG A 577 N LEU A 55 ? N LEU A 504 AA1 3 4 N TYR A 58 ? N TYR A 507 O ALA A 75 ? O ALA A 524 AA1 4 5 N VAL A 76 ? N VAL A 525 O PHE A 87 ? O PHE A 536 AA1 5 6 N PHE A 87 ? N PHE A 536 O VAL A 214 ? O VAL A 663 # _atom_sites.entry_id 6M5T _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 450 ? ? ? A . n A 1 2 GLY 2 451 ? ? ? A . n A 1 3 SER 3 452 ? ? ? A . n A 1 4 SER 4 453 ? ? ? A . n A 1 5 HIS 5 454 ? ? ? A . n A 1 6 HIS 6 455 ? ? ? A . n A 1 7 HIS 7 456 ? ? ? A . n A 1 8 HIS 8 457 ? ? ? A . n A 1 9 HIS 9 458 ? ? ? A . n A 1 10 HIS 10 459 ? ? ? A . n A 1 11 SER 11 460 ? ? ? A . n A 1 12 SER 12 461 ? ? ? A . n A 1 13 GLY 13 462 ? ? ? A . n A 1 14 LEU 14 463 ? ? ? A . n A 1 15 VAL 15 464 ? ? ? A . n A 1 16 PRO 16 465 ? ? ? A . n A 1 17 ARG 17 466 ? ? ? A . n A 1 18 GLY 18 467 ? ? ? A . n A 1 19 SER 19 468 ? ? ? A . n A 1 20 HIS 20 469 ? ? ? A . n A 1 21 MET 21 470 ? ? ? A . n A 1 22 THR 22 471 ? ? ? A . n A 1 23 GLY 23 472 ? ? ? A . n A 1 24 ASP 24 473 ? ? ? A . n A 1 25 ASP 25 474 ? ? ? A . n A 1 26 ARG 26 475 ? ? ? A . n A 1 27 PRO 27 476 476 PRO PRO A . n A 1 28 VAL 28 477 477 VAL VAL A . n A 1 29 LEU 29 478 478 LEU LEU A . n A 1 30 THR 30 479 479 THR THR A . n A 1 31 LYS 31 480 480 LYS LYS A . n A 1 32 SER 32 481 481 SER SER A . n A 1 33 ALA 33 482 482 ALA ALA A . n A 1 34 GLY 34 483 483 GLY GLY A . n A 1 35 GLU 35 484 484 GLU GLU A . n A 1 36 ARG 36 485 485 ARG ARG A . n A 1 37 PHE 37 486 486 PHE PHE A . n A 1 38 LEU 38 487 487 LEU LEU A . n A 1 39 LEU 39 488 488 LEU LEU A . n A 1 40 TYR 40 489 489 TYR TYR A . n A 1 41 ARG 41 490 490 ARG ARG A . n A 1 42 PRO 42 491 491 PRO PRO A . n A 1 43 SER 43 492 492 SER SER A . n A 1 44 THR 44 493 493 THR THR A . n A 1 45 THR 45 494 494 THR THR A . n A 1 46 THR 46 495 495 THR THR A . n A 1 47 ASN 47 496 496 ASN ASN A . n A 1 48 SER 48 497 497 SER SER A . n A 1 49 GLY 49 498 498 GLY GLY A . n A 1 50 LEU 50 499 499 LEU LEU A . n A 1 51 MET 51 500 500 MET MET A . n A 1 52 ALA 52 501 501 ALA ALA A . n A 1 53 PRO 53 502 502 PRO PRO A . n A 1 54 ASP 54 503 503 ASP ASP A . n A 1 55 LEU 55 504 504 LEU LEU A . n A 1 56 TYR 56 505 505 TYR TYR A . n A 1 57 VAL 57 506 506 VAL VAL A . n A 1 58 TYR 58 507 507 TYR TYR A . n A 1 59 VAL 59 508 508 VAL VAL A . n A 1 60 ASP 60 509 509 ASP ASP A . n A 1 61 PRO 61 510 510 PRO PRO A . n A 1 62 ALA 62 511 511 ALA ALA A . n A 1 63 PHE 63 512 512 PHE PHE A . n A 1 64 THR 64 513 513 THR THR A . n A 1 65 ALA 65 514 514 ALA ALA A . n A 1 66 ASN 66 515 515 ASN ASN A . n A 1 67 THR 67 516 516 THR THR A . n A 1 68 ARG 68 517 517 ARG ARG A . n A 1 69 ALA 69 518 518 ALA ALA A . n A 1 70 SER 70 519 519 SER SER A . n A 1 71 GLY 71 520 520 GLY GLY A . n A 1 72 THR 72 521 521 THR THR A . n A 1 73 GLY 73 522 522 GLY GLY A . n A 1 74 VAL 74 523 523 VAL VAL A . n A 1 75 ALA 75 524 524 ALA ALA A . n A 1 76 VAL 76 525 525 VAL VAL A . n A 1 77 VAL 77 526 526 VAL VAL A . n A 1 78 GLY 78 527 527 GLY GLY A . n A 1 79 ARG 79 528 528 ARG ARG A . n A 1 80 TYR 80 529 529 TYR TYR A . n A 1 81 ARG 81 530 530 ARG ARG A . n A 1 82 ASP 82 531 531 ASP ASP A . n A 1 83 ASP 83 532 532 ASP ASP A . n A 1 84 TYR 84 533 533 TYR TYR A . n A 1 85 ILE 85 534 534 ILE ILE A . n A 1 86 ILE 86 535 535 ILE ILE A . n A 1 87 PHE 87 536 536 PHE PHE A . n A 1 88 ALA 88 537 537 ALA ALA A . n A 1 89 LEU 89 538 538 LEU LEU A . n A 1 90 GLU 90 539 539 GLU GLU A . n A 1 91 HIS 91 540 540 HIS HIS A . n A 1 92 PHE 92 541 541 PHE PHE A . n A 1 93 PHE 93 542 542 PHE PHE A . n A 1 94 LEU 94 543 543 LEU LEU A . n A 1 95 ARG 95 544 544 ARG ARG A . n A 1 96 ALA 96 545 545 ALA ALA A . n A 1 97 LEU 97 546 546 LEU LEU A . n A 1 98 THR 98 547 547 THR THR A . n A 1 99 GLY 99 548 548 GLY GLY A . n A 1 100 SER 100 549 549 SER SER A . n A 1 101 ALA 101 550 550 ALA ALA A . n A 1 102 PRO 102 551 551 PRO PRO A . n A 1 103 ALA 103 552 552 ALA ALA A . n A 1 104 ASP 104 553 553 ASP ASP A . n A 1 105 ILE 105 554 554 ILE ILE A . n A 1 106 ALA 106 555 555 ALA ALA A . n A 1 107 ARG 107 556 556 ARG ARG A . n A 1 108 CYS 108 557 557 CYS CYS A . n A 1 109 VAL 109 558 558 VAL VAL A . n A 1 110 VAL 110 559 559 VAL VAL A . n A 1 111 HIS 111 560 560 HIS HIS A . n A 1 112 SER 112 561 561 SER SER A . n A 1 113 LEU 113 562 562 LEU LEU A . n A 1 114 THR 114 563 563 THR THR A . n A 1 115 GLN 115 564 564 GLN GLN A . n A 1 116 VAL 116 565 565 VAL VAL A . n A 1 117 LEU 117 566 566 LEU LEU A . n A 1 118 ALA 118 567 567 ALA ALA A . n A 1 119 LEU 119 568 568 LEU LEU A . n A 1 120 HIS 120 569 569 HIS HIS A . n A 1 121 PRO 121 570 570 PRO PRO A . n A 1 122 GLY 122 571 571 GLY GLY A . n A 1 123 ALA 123 572 572 ALA ALA A . n A 1 124 PHE 124 573 573 PHE PHE A . n A 1 125 ARG 125 574 574 ARG ARG A . n A 1 126 GLY 126 575 575 GLY GLY A . n A 1 127 VAL 127 576 576 VAL VAL A . n A 1 128 ARG 128 577 577 ARG ARG A . n A 1 129 VAL 129 578 578 VAL VAL A . n A 1 130 ALA 130 579 579 ALA ALA A . n A 1 131 VAL 131 580 580 VAL VAL A . n A 1 132 GLU 132 581 581 GLU GLU A . n A 1 133 GLY 133 582 582 GLY GLY A . n A 1 134 ASN 134 583 583 ASN ASN A . n A 1 135 SER 135 584 584 SER SER A . n A 1 136 SER 136 585 585 SER SER A . n A 1 137 GLN 137 586 586 GLN GLN A . n A 1 138 ASP 138 587 587 ASP ASP A . n A 1 139 SER 139 588 588 SER SER A . n A 1 140 ALA 140 589 589 ALA ALA A . n A 1 141 VAL 141 590 590 VAL VAL A . n A 1 142 ALA 142 591 591 ALA ALA A . n A 1 143 ILE 143 592 592 ILE ILE A . n A 1 144 ALA 144 593 593 ALA ALA A . n A 1 145 THR 145 594 594 THR THR A . n A 1 146 HIS 146 595 595 HIS HIS A . n A 1 147 VAL 147 596 596 VAL VAL A . n A 1 148 HIS 148 597 597 HIS HIS A . n A 1 149 THR 149 598 598 THR THR A . n A 1 150 GLU 150 599 599 GLU GLU A . n A 1 151 MET 151 600 600 MET MET A . n A 1 152 HIS 152 601 601 HIS HIS A . n A 1 153 ARG 153 602 602 ARG ARG A . n A 1 154 LEU 154 603 603 LEU LEU A . n A 1 155 LEU 155 604 604 LEU LEU A . n A 1 156 ALA 156 605 605 ALA ALA A . n A 1 157 SER 157 606 606 SER SER A . n A 1 158 GLU 158 607 607 GLU GLU A . n A 1 159 GLY 159 608 608 GLY GLY A . n A 1 160 ALA 160 609 609 ALA ALA A . n A 1 161 ASP 161 610 610 ASP ASP A . n A 1 162 ALA 162 611 611 ALA ALA A . n A 1 163 GLY 163 612 612 GLY GLY A . n A 1 164 SER 164 613 613 SER SER A . n A 1 165 GLY 165 614 614 GLY GLY A . n A 1 166 PRO 166 615 615 PRO PRO A . n A 1 167 GLU 167 616 616 GLU GLU A . n A 1 168 LEU 168 617 617 LEU LEU A . n A 1 169 LEU 169 618 618 LEU LEU A . n A 1 170 PHE 170 619 619 PHE PHE A . n A 1 171 TYR 171 620 620 TYR TYR A . n A 1 172 HIS 172 621 621 HIS HIS A . n A 1 173 CYS 173 622 622 CYS CYS A . n A 1 174 GLU 174 623 623 GLU GLU A . n A 1 175 PRO 175 624 624 PRO PRO A . n A 1 176 PRO 176 625 625 PRO PRO A . n A 1 177 GLY 177 626 626 GLY GLY A . n A 1 178 SER 178 627 627 SER SER A . n A 1 179 ALA 179 628 628 ALA ALA A . n A 1 180 VAL 180 629 629 VAL VAL A . n A 1 181 LEU 181 630 630 LEU LEU A . n A 1 182 TYR 182 631 631 TYR TYR A . n A 1 183 PRO 183 632 632 PRO PRO A . n A 1 184 PHE 184 633 633 PHE PHE A . n A 1 185 PHE 185 634 634 PHE PHE A . n A 1 186 LEU 186 635 635 LEU LEU A . n A 1 187 LEU 187 636 636 LEU LEU A . n A 1 188 ASN 188 637 637 ASN ASN A . n A 1 189 LYS 189 638 638 LYS LYS A . n A 1 190 GLN 190 639 639 GLN GLN A . n A 1 191 LYS 191 640 640 LYS LYS A . n A 1 192 THR 192 641 641 THR THR A . n A 1 193 PRO 193 642 642 PRO PRO A . n A 1 194 ALA 194 643 643 ALA ALA A . n A 1 195 PHE 195 644 644 PHE PHE A . n A 1 196 GLU 196 645 645 GLU GLU A . n A 1 197 HIS 197 646 646 HIS HIS A . n A 1 198 PHE 198 647 647 PHE PHE A . n A 1 199 ILE 199 648 648 ILE ILE A . n A 1 200 LYS 200 649 649 LYS LYS A . n A 1 201 LYS 201 650 650 LYS LYS A . n A 1 202 PHE 202 651 651 PHE PHE A . n A 1 203 ASN 203 652 652 ASN ASN A . n A 1 204 SER 204 653 653 SER SER A . n A 1 205 GLY 205 654 654 GLY GLY A . n A 1 206 GLY 206 655 655 GLY GLY A . n A 1 207 VAL 207 656 656 VAL VAL A . n A 1 208 MET 208 657 657 MET MET A . n A 1 209 ALA 209 658 658 ALA ALA A . n A 1 210 SER 210 659 659 SER SER A . n A 1 211 GLN 211 660 660 GLN GLN A . n A 1 212 GLU 212 661 661 GLU GLU A . n A 1 213 ILE 213 662 662 ILE ILE A . n A 1 214 VAL 214 663 663 VAL VAL A . n A 1 215 SER 215 664 664 SER SER A . n A 1 216 ALA 216 665 665 ALA ALA A . n A 1 217 THR 217 666 666 THR THR A . n A 1 218 VAL 218 667 667 VAL VAL A . n A 1 219 ARG 219 668 668 ARG ARG A . n A 1 220 LEU 220 669 669 LEU LEU A . n A 1 221 GLN 221 670 670 GLN GLN A . n A 1 222 THR 222 671 671 THR THR A . n A 1 223 ASP 223 672 672 ASP ASP A . n A 1 224 PRO 224 673 673 PRO PRO A . n A 1 225 VAL 225 674 674 VAL VAL A . n A 1 226 GLU 226 675 675 GLU GLU A . n A 1 227 TYR 227 676 676 TYR TYR A . n A 1 228 LEU 228 677 677 LEU LEU A . n A 1 229 LEU 229 678 678 LEU LEU A . n A 1 230 GLU 230 679 679 GLU GLU A . n A 1 231 GLN 231 680 680 GLN GLN A . n A 1 232 LEU 232 681 681 LEU LEU A . n A 1 233 ASN 233 682 682 ASN ASN A . n A 1 234 ASN 234 683 683 ASN ASN A . n A 1 235 LEU 235 684 684 LEU LEU A . n A 1 236 THR 236 685 685 THR THR A . n A 1 237 GLU 237 686 686 GLU GLU A . n A 1 238 THR 238 687 687 THR THR A . n A 1 239 VAL 239 688 688 VAL VAL A . n A 1 240 SER 240 689 689 SER SER A . n A 1 241 PRO 241 690 690 PRO PRO A . n A 1 242 ASN 242 691 691 ASN ASN A . n A 1 243 THR 243 692 692 THR THR A . n A 1 244 ASP 244 693 693 ASP ASP A . n A 1 245 VAL 245 694 ? ? ? A . n A 1 246 ARG 246 695 ? ? ? A . n A 1 247 THR 247 696 ? ? ? A . n A 1 248 TYR 248 697 ? ? ? A . n A 1 249 SER 249 698 ? ? ? A . n A 1 250 GLY 250 699 ? ? ? A . n A 1 251 LYS 251 700 ? ? ? A . n A 1 252 ARG 252 701 ? ? ? A . n A 1 253 ASN 253 702 ? ? ? A . n A 1 254 GLY 254 703 703 GLY GLY A . n A 1 255 ALA 255 704 704 ALA ALA A . n A 1 256 SER 256 705 705 SER SER A . n A 1 257 ASP 257 706 706 ASP ASP A . n A 1 258 ASP 258 707 707 ASP ASP A . n A 1 259 LEU 259 708 708 LEU LEU A . n A 1 260 MET 260 709 709 MET MET A . n A 1 261 VAL 261 710 710 VAL VAL A . n A 1 262 ALA 262 711 711 ALA ALA A . n A 1 263 VAL 263 712 712 VAL VAL A . n A 1 264 ILE 264 713 713 ILE ILE A . n A 1 265 MET 265 714 714 MET MET A . n A 1 266 ALA 266 715 715 ALA ALA A . n A 1 267 ILE 267 716 716 ILE ILE A . n A 1 268 TYR 268 717 717 TYR TYR A . n A 1 269 LEU 269 718 718 LEU LEU A . n A 1 270 ALA 270 719 719 ALA ALA A . n A 1 271 ALA 271 720 720 ALA ALA A . n A 1 272 GLN 272 721 721 GLN GLN A . n A 1 273 ALA 273 722 722 ALA ALA A . n A 1 274 GLY 274 723 723 GLY GLY A . n A 1 275 PRO 275 724 724 PRO PRO A . n A 1 276 PRO 276 725 725 PRO PRO A . n A 1 277 HIS 277 726 726 HIS HIS A . n A 1 278 THR 278 727 727 THR THR A . n A 1 279 PHE 279 728 728 PHE PHE A . n A 1 280 ALA 280 729 ? ? ? A . n A 1 281 PRO 281 730 ? ? ? A . n A 1 282 ILE 282 731 ? ? ? A . n A 1 283 THR 283 732 ? ? ? A . n A 1 284 ARG 284 733 ? ? ? A . n A 1 285 VAL 285 734 ? ? ? A . n A 1 286 SER 286 735 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 12650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-28 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' refine # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_refine.ls_d_res_high' 4 2 'Structure model' '_refine.ls_d_res_low' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'ELECTRON MICROSCOPY' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 56.6268 _pdbx_refine_tls.origin_y 36.7358 _pdbx_refine_tls.origin_z 11.8879 _pdbx_refine_tls.T[1][1] 0.3639 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0166 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0491 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.2970 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0416 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.4978 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.5702 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.1437 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.0560 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.4471 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.2530 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.5053 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0107 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0214 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.1035 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.1706 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0011 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0697 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.1718 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.0138 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0079 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'ELECTRON MICROSCOPY' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.8.1_1168 _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 6M5T _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6M5T _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 42053 _em_3d_reconstruction.resolution 3.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'HSV-1 nuclease domain of terminase complex' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6M5T _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6M5T _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6M5T _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A ASP 693 ? ? CA A GLY 703 ? ? 1.54 2 1 CA A ASP 693 ? ? N A GLY 703 ? ? 1.68 3 1 N A ASP 693 ? ? N A GLY 703 ? ? 1.82 4 1 O A ASP 693 ? ? N A GLY 703 ? ? 2.01 5 1 O A ASP 693 ? ? CA A GLY 703 ? ? 2.13 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASP _pdbx_validate_rmsd_bond.auth_seq_id_1 693 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLY _pdbx_validate_rmsd_bond.auth_seq_id_2 703 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.122 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.214 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A ASP 693 ? ? C A ASP 693 ? ? N A GLY 703 ? ? 77.13 116.20 -39.07 2.00 Y 2 1 C A ASP 693 ? ? N A GLY 703 ? ? CA A GLY 703 ? ? 71.98 122.30 -50.32 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 490 ? ? -117.28 75.11 2 1 LEU A 499 ? ? -92.27 33.39 3 1 LEU A 546 ? ? 60.69 64.80 4 1 GLU A 607 ? ? -150.08 -156.93 5 1 GLU A 661 ? ? -97.47 41.41 6 1 GLU A 686 ? ? -73.01 -161.64 7 1 THR A 692 ? ? 64.29 72.85 8 1 ASP A 693 ? ? -68.51 2.20 9 1 ALA A 722 ? ? -165.09 -165.18 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ASP _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 693 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -29.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 450 ? A MET 1 2 1 Y 1 A GLY 451 ? A GLY 2 3 1 Y 1 A SER 452 ? A SER 3 4 1 Y 1 A SER 453 ? A SER 4 5 1 Y 1 A HIS 454 ? A HIS 5 6 1 Y 1 A HIS 455 ? A HIS 6 7 1 Y 1 A HIS 456 ? A HIS 7 8 1 Y 1 A HIS 457 ? A HIS 8 9 1 Y 1 A HIS 458 ? A HIS 9 10 1 Y 1 A HIS 459 ? A HIS 10 11 1 Y 1 A SER 460 ? A SER 11 12 1 Y 1 A SER 461 ? A SER 12 13 1 Y 1 A GLY 462 ? A GLY 13 14 1 Y 1 A LEU 463 ? A LEU 14 15 1 Y 1 A VAL 464 ? A VAL 15 16 1 Y 1 A PRO 465 ? A PRO 16 17 1 Y 1 A ARG 466 ? A ARG 17 18 1 Y 1 A GLY 467 ? A GLY 18 19 1 Y 1 A SER 468 ? A SER 19 20 1 Y 1 A HIS 469 ? A HIS 20 21 1 Y 1 A MET 470 ? A MET 21 22 1 Y 1 A THR 471 ? A THR 22 23 1 Y 1 A GLY 472 ? A GLY 23 24 1 Y 1 A ASP 473 ? A ASP 24 25 1 Y 1 A ASP 474 ? A ASP 25 26 1 Y 1 A ARG 475 ? A ARG 26 27 1 Y 1 A VAL 694 ? A VAL 245 28 1 Y 1 A ARG 695 ? A ARG 246 29 1 Y 1 A THR 696 ? A THR 247 30 1 Y 1 A TYR 697 ? A TYR 248 31 1 Y 1 A SER 698 ? A SER 249 32 1 Y 1 A GLY 699 ? A GLY 250 33 1 Y 1 A LYS 700 ? A LYS 251 34 1 Y 1 A ARG 701 ? A ARG 252 35 1 Y 1 A ASN 702 ? A ASN 253 36 1 Y 1 A ALA 729 ? A ALA 280 37 1 Y 1 A PRO 730 ? A PRO 281 38 1 Y 1 A ILE 731 ? A ILE 282 39 1 Y 1 A THR 732 ? A THR 283 40 1 Y 1 A ARG 733 ? A ARG 284 41 1 Y 1 A VAL 734 ? A VAL 285 42 1 Y 1 A SER 735 ? A SER 286 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 10298 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Human herpesvirus 1' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 2 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number '31800145 and 31570717' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N4P _pdbx_initial_refinement_model.details 'PDB ENTRY 3N4P' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #