HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-OCT-18 6MVD TITLE CRYSTAL STRUCTURE OF LECITHIN:CHOLESTEROL ACYLTRANSFERASE (LCAT) IN TITLE 2 COMPLEX WITH ISOPROPYL DODEC-11-ENYLFLUOROPHOSPHONATE (IDFP) AND A TITLE 3 SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LECITHIN-CHOLESTEROL ACYLTRANSFERASE,PHOSPHOLIPID- COMPND 5 CHOLESTEROL ACYLTRANSFERASE; COMPND 6 EC: 2.3.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCAT; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS LCAT, ACYLTRANSFERASE, CHOLESTEROL, ACTIVATOR, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.A.MANTHEI,L.CHANG,J.J.G.TESMER REVDAT 5 11-OCT-23 6MVD 1 HETSYN REVDAT 4 29-JUL-20 6MVD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 04-DEC-19 6MVD 1 REMARK REVDAT 2 12-DEC-18 6MVD 1 JRNL REVDAT 1 05-DEC-18 6MVD 0 SPRSDE 05-DEC-18 6MVD 6DTJ JRNL AUTH K.A.MANTHEI,S.M.YANG,B.BALJINNYAM,L.CHANG,A.GLUKHOVA,W.YUAN, JRNL AUTH 2 L.A.FREEMAN,D.J.MALONEY,A.SCHWENDEMAN,A.T.REMALEY,A.JADHAV, JRNL AUTH 3 J.J.TESMER JRNL TITL MOLECULAR BASIS FOR ACTIVATION OF LECITHIN:CHOLESTEROL JRNL TITL 2 ACYLTRANSFERASE BY A COMPOUND THAT INCREASES HDL JRNL TITL 3 CHOLESTEROL. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 30479275 JRNL DOI 10.7554/ELIFE.41604 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 3 NUMBER OF REFLECTIONS : 20413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 183 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6358 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5501 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8705 ; 1.331 ; 1.692 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12869 ; 0.822 ; 1.649 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 740 ; 7.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 329 ;33.735 ;21.763 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 948 ;16.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7046 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1252 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2972 ; 2.246 ; 5.895 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2971 ; 2.246 ; 5.895 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3708 ; 3.784 ; 8.835 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3709 ; 3.783 ; 8.835 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3386 ; 2.137 ; 6.146 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3376 ; 2.131 ; 6.136 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4979 ; 3.664 ; 9.121 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7334 ; 6.294 ;70.926 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7333 ; 6.292 ;70.939 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 505 REMARK 3 ORIGIN FOR THE GROUP (A): 112.5353 -2.4908 114.6773 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.1959 REMARK 3 T33: 0.0543 T12: -0.0157 REMARK 3 T13: 0.0487 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.7527 L22: 0.3426 REMARK 3 L33: 0.4707 L12: -0.2195 REMARK 3 L13: -0.1483 L23: 0.3824 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0269 S13: -0.0697 REMARK 3 S21: -0.0026 S22: -0.0722 S23: 0.0540 REMARK 3 S31: -0.0221 S32: -0.0227 S33: 0.0466 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 77.9617 21.1487 121.3825 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.2007 REMARK 3 T33: 0.0142 T12: 0.0472 REMARK 3 T13: 0.0193 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 0.6833 REMARK 3 L33: 0.4656 L12: -1.0640 REMARK 3 L13: 0.8758 L23: -0.5083 REMARK 3 S TENSOR REMARK 3 S11: 0.1802 S12: 0.0592 S13: -0.0109 REMARK 3 S21: -0.0476 S22: -0.1340 S23: 0.0031 REMARK 3 S31: 0.0056 S32: -0.0329 S33: -0.0462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6MVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24440 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, AND 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.34850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.18850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.34850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.18850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 SER B 236 REMARK 465 ILE B 237 REMARK 465 LYS B 238 REMARK 465 LEU B 239 REMARK 465 LYS B 240 REMARK 465 GLU B 241 REMARK 465 GLU B 242 REMARK 465 GLY B 396 REMARK 465 ALA B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 65.22 -162.93 REMARK 500 ASP A 44 131.89 -172.60 REMARK 500 LEU A 70 -2.05 77.57 REMARK 500 TYR A 120 -77.65 -125.92 REMARK 500 GLU A 137 -81.99 -132.37 REMARK 500 ALA A 170 -71.86 -42.54 REMARK 500 SER A 181 -135.37 60.23 REMARK 500 GLN A 229 55.45 38.06 REMARK 500 PRO A 260 137.22 -39.75 REMARK 500 PHE A 287 58.08 -146.61 REMARK 500 LEU A 304 70.28 50.03 REMARK 500 ASP A 328 -154.16 -78.18 REMARK 500 ASP A 346 -26.14 92.80 REMARK 500 ASP B 41 60.85 -162.20 REMARK 500 ASP B 44 -166.34 -123.50 REMARK 500 ASP B 56 -159.25 -146.04 REMARK 500 THR B 59 98.67 -59.03 REMARK 500 ALA B 118 79.41 -66.38 REMARK 500 TYR B 120 -71.46 -108.12 REMARK 500 ASP B 136 -12.64 73.43 REMARK 500 GLU B 137 -95.18 -97.38 REMARK 500 GLN B 153 44.67 -85.61 REMARK 500 SER B 181 -117.19 58.97 REMARK 500 TRP B 251 5.19 -153.28 REMARK 500 GLU B 261 -35.50 -36.61 REMARK 500 ASP B 277 33.69 -99.82 REMARK 500 PHE B 287 55.79 -158.82 REMARK 500 ASP B 299 75.44 -105.80 REMARK 500 LEU B 300 -52.90 -144.17 REMARK 500 ASP B 328 -158.52 -83.97 REMARK 500 ASP B 346 -45.37 95.27 REMARK 500 LEU B 370 57.67 -140.62 REMARK 500 SER B 383 132.92 -37.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 193 0.12 SIDE CHAIN REMARK 500 ARG A 351 0.13 SIDE CHAIN REMARK 500 ARG B 280 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 510 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 N REMARK 620 2 HIS A 21 ND1 80.1 REMARK 620 3 HIS A 368 NE2 67.7 133.3 REMARK 620 4 HIS A 398 ND1 67.9 138.7 7.3 REMARK 620 5 HOH A 613 O 74.5 143.3 10.0 6.6 REMARK 620 N 1 2 3 4 DBREF 6MVD A 21 397 UNP P04180 LCAT_HUMAN 45 421 DBREF 6MVD B 21 397 UNP P04180 LCAT_HUMAN 45 421 SEQADV 6MVD HIS A 398 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS A 399 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS A 400 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS A 401 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS A 402 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS A 403 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 398 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 399 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 400 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 401 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 402 UNP P04180 EXPRESSION TAG SEQADV 6MVD HIS B 403 UNP P04180 EXPRESSION TAG SEQRES 1 A 383 HIS THR ARG PRO VAL ILE LEU VAL PRO GLY CYS LEU GLY SEQRES 2 A 383 ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO ASP VAL VAL SEQRES 3 A 383 ASN TRP MET CYS TYR ARG LYS THR GLU ASP PHE PHE THR SEQRES 4 A 383 ILE TRP LEU ASP LEU ASN MET PHE LEU PRO LEU GLY VAL SEQRES 5 A 383 ASP CYS TRP ILE ASP ASN THR ARG VAL VAL TYR ASN ARG SEQRES 6 A 383 SER SER GLY LEU VAL SER ASN ALA PRO GLY VAL GLN ILE SEQRES 7 A 383 ARG VAL PRO GLY PHE GLY LYS THR TYR SER VAL GLU TYR SEQRES 8 A 383 LEU ASP SER SER LYS LEU ALA GLY TYR LEU HIS THR LEU SEQRES 9 A 383 VAL GLN ASN LEU VAL ASN ASN GLY TYR VAL ARG ASP GLU SEQRES 10 A 383 THR VAL ARG ALA ALA PRO TYR ASP TRP ARG LEU GLU PRO SEQRES 11 A 383 GLY GLN GLN GLU GLU TYR TYR ARG LYS LEU ALA GLY LEU SEQRES 12 A 383 VAL GLU GLU MET HIS ALA ALA TYR GLY LYS PRO VAL PHE SEQRES 13 A 383 LEU ILE GLY HIS SER LEU GLY CYS LEU HIS LEU LEU TYR SEQRES 14 A 383 PHE LEU LEU ARG GLN PRO GLN ALA TRP LYS ASP ARG PHE SEQRES 15 A 383 ILE ASP GLY PHE ILE SER LEU GLY ALA PRO TRP GLY GLY SEQRES 16 A 383 SER ILE LYS PRO MET LEU VAL LEU ALA SER GLY ASP ASN SEQRES 17 A 383 GLN GLY ILE PRO ILE MET SER SER ILE LYS LEU LYS GLU SEQRES 18 A 383 GLU GLN ARG ILE THR THR THR SER PRO TRP MET PHE PRO SEQRES 19 A 383 SER ARG MET ALA TRP PRO GLU ASP HIS VAL PHE ILE SER SEQRES 20 A 383 THR PRO SER PHE ASN TYR THR GLY ARG ASP PHE GLN ARG SEQRES 21 A 383 PHE PHE ALA ASP LEU HIS PHE GLU GLU GLY TRP TYR MET SEQRES 22 A 383 TRP LEU GLN SER ARG ASP LEU LEU ALA GLY LEU PRO ALA SEQRES 23 A 383 PRO GLY VAL GLU VAL TYR CYS LEU TYR GLY VAL GLY LEU SEQRES 24 A 383 PRO THR PRO ARG THR TYR ILE TYR ASP HIS GLY PHE PRO SEQRES 25 A 383 TYR THR ASP PRO VAL GLY VAL LEU TYR GLU ASP GLY ASP SEQRES 26 A 383 ASP THR VAL ALA THR ARG SER THR GLU LEU CYS GLY LEU SEQRES 27 A 383 TRP GLN GLY ARG GLN PRO GLN PRO VAL HIS LEU LEU PRO SEQRES 28 A 383 LEU HIS GLY ILE GLN HIS LEU ASN MET VAL PHE SER ASN SEQRES 29 A 383 LEU THR LEU GLU HIS ILE ASN ALA ILE LEU LEU GLY ALA SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS SEQRES 1 B 383 HIS THR ARG PRO VAL ILE LEU VAL PRO GLY CYS LEU GLY SEQRES 2 B 383 ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO ASP VAL VAL SEQRES 3 B 383 ASN TRP MET CYS TYR ARG LYS THR GLU ASP PHE PHE THR SEQRES 4 B 383 ILE TRP LEU ASP LEU ASN MET PHE LEU PRO LEU GLY VAL SEQRES 5 B 383 ASP CYS TRP ILE ASP ASN THR ARG VAL VAL TYR ASN ARG SEQRES 6 B 383 SER SER GLY LEU VAL SER ASN ALA PRO GLY VAL GLN ILE SEQRES 7 B 383 ARG VAL PRO GLY PHE GLY LYS THR TYR SER VAL GLU TYR SEQRES 8 B 383 LEU ASP SER SER LYS LEU ALA GLY TYR LEU HIS THR LEU SEQRES 9 B 383 VAL GLN ASN LEU VAL ASN ASN GLY TYR VAL ARG ASP GLU SEQRES 10 B 383 THR VAL ARG ALA ALA PRO TYR ASP TRP ARG LEU GLU PRO SEQRES 11 B 383 GLY GLN GLN GLU GLU TYR TYR ARG LYS LEU ALA GLY LEU SEQRES 12 B 383 VAL GLU GLU MET HIS ALA ALA TYR GLY LYS PRO VAL PHE SEQRES 13 B 383 LEU ILE GLY HIS SER LEU GLY CYS LEU HIS LEU LEU TYR SEQRES 14 B 383 PHE LEU LEU ARG GLN PRO GLN ALA TRP LYS ASP ARG PHE SEQRES 15 B 383 ILE ASP GLY PHE ILE SER LEU GLY ALA PRO TRP GLY GLY SEQRES 16 B 383 SER ILE LYS PRO MET LEU VAL LEU ALA SER GLY ASP ASN SEQRES 17 B 383 GLN GLY ILE PRO ILE MET SER SER ILE LYS LEU LYS GLU SEQRES 18 B 383 GLU GLN ARG ILE THR THR THR SER PRO TRP MET PHE PRO SEQRES 19 B 383 SER ARG MET ALA TRP PRO GLU ASP HIS VAL PHE ILE SER SEQRES 20 B 383 THR PRO SER PHE ASN TYR THR GLY ARG ASP PHE GLN ARG SEQRES 21 B 383 PHE PHE ALA ASP LEU HIS PHE GLU GLU GLY TRP TYR MET SEQRES 22 B 383 TRP LEU GLN SER ARG ASP LEU LEU ALA GLY LEU PRO ALA SEQRES 23 B 383 PRO GLY VAL GLU VAL TYR CYS LEU TYR GLY VAL GLY LEU SEQRES 24 B 383 PRO THR PRO ARG THR TYR ILE TYR ASP HIS GLY PHE PRO SEQRES 25 B 383 TYR THR ASP PRO VAL GLY VAL LEU TYR GLU ASP GLY ASP SEQRES 26 B 383 ASP THR VAL ALA THR ARG SER THR GLU LEU CYS GLY LEU SEQRES 27 B 383 TRP GLN GLY ARG GLN PRO GLN PRO VAL HIS LEU LEU PRO SEQRES 28 B 383 LEU HIS GLY ILE GLN HIS LEU ASN MET VAL PHE SER ASN SEQRES 29 B 383 LEU THR LEU GLU HIS ILE ASN ALA ILE LEU LEU GLY ALA SEQRES 30 B 383 HIS HIS HIS HIS HIS HIS HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET H9A A 504 8 HET H94 A 505 33 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET NI A 510 1 HET NAG B 501 14 HET NAG B 502 14 HET H9A B 503 8 HET H94 B 504 33 HET SO4 B 505 5 HET SO4 B 506 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM H9A PROPAN-2-YL HYDROGEN (R)-ETHYLPHOSPHONATE HETNAM H94 6-{4-[(4R)-4-HYDROXY-6-OXO-4-(TRIFLUOROMETHYL)-4,5,6,7- HETNAM 2 H94 TETRAHYDRO-2H-PYRAZOLO[3,4-B]PYRIDIN-3-YL]PIPERIDIN-1- HETNAM 3 H94 YL}-4-(TRIFLUOROMETHYL)PYRIDINE-3-CARBONITRILE HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 6 H9A 2(C5 H13 O3 P) FORMUL 7 H94 2(C19 H16 F6 N6 O2) FORMUL 8 SO4 6(O4 S 2-) FORMUL 12 NI NI 2+ FORMUL 19 HOH *20(H2 O) HELIX 1 AA1 ASP A 63 PHE A 67 5 5 HELIX 2 AA2 LEU A 70 ARG A 80 1 11 HELIX 3 AA3 THR A 106 TYR A 111 1 6 HELIX 4 AA4 LEU A 121 ASN A 130 1 10 HELIX 5 AA5 GLU A 149 GLN A 152 5 4 HELIX 6 AA6 GLN A 153 GLY A 172 1 20 HELIX 7 AA7 SER A 181 ARG A 193 1 13 HELIX 8 AA8 PRO A 195 PHE A 202 1 8 HELIX 9 AA9 ILE A 217 GLY A 226 1 10 HELIX 10 AB1 ASP A 277 LEU A 285 1 9 HELIX 11 AB2 PHE A 287 ARG A 298 1 12 HELIX 12 AB3 ALA A 349 GLU A 354 1 6 HELIX 13 AB4 LEU A 355 GLN A 360 5 6 HELIX 14 AB5 GLN A 376 MET A 380 5 5 HELIX 15 AB6 SER A 383 LEU A 395 1 13 HELIX 16 AB7 ASP B 63 LEU B 68 5 6 HELIX 17 AB8 LEU B 70 ARG B 80 1 11 HELIX 18 AB9 THR B 106 TYR B 111 1 6 HELIX 19 AC1 LEU B 121 ASN B 130 1 10 HELIX 20 AC2 GLN B 153 GLY B 172 1 20 HELIX 21 AC3 SER B 181 GLN B 194 1 14 HELIX 22 AC4 PRO B 195 PHE B 202 1 8 HELIX 23 AC5 ILE B 217 GLY B 226 1 10 HELIX 24 AC6 ASP B 277 LEU B 285 1 9 HELIX 25 AC7 PHE B 287 ASP B 299 1 13 HELIX 26 AC8 ALA B 349 GLU B 354 1 6 HELIX 27 AC9 LEU B 355 GLN B 360 5 6 HELIX 28 AD1 LEU B 378 PHE B 382 5 5 HELIX 29 AD2 SER B 383 LEU B 395 1 13 SHEET 1 AA1 6 VAL A 139 ALA A 141 0 SHEET 2 AA1 6 VAL A 25 VAL A 28 1 N LEU A 27 O ARG A 140 SHEET 3 AA1 6 VAL A 175 HIS A 180 1 O ILE A 178 N VAL A 28 SHEET 4 AA1 6 ILE A 203 LEU A 209 1 O ILE A 207 N LEU A 177 SHEET 5 AA1 6 VAL A 311 VAL A 317 1 O LEU A 314 N SER A 208 SHEET 6 AA1 6 VAL A 367 HIS A 373 1 O HIS A 368 N CYS A 313 SHEET 1 AA2 3 PHE A 58 TRP A 61 0 SHEET 2 AA2 3 LEU A 36 LEU A 40 -1 N LEU A 36 O ILE A 60 SHEET 3 AA2 3 VAL A 96 ARG A 99 -1 O ARG A 99 N GLU A 37 SHEET 1 AA3 2 VAL A 81 ASN A 84 0 SHEET 2 AA3 2 LEU A 89 ASN A 92 -1 O SER A 91 N VAL A 82 SHEET 1 AA4 4 ASN A 272 THR A 274 0 SHEET 2 AA4 4 VAL A 264 SER A 267 -1 N PHE A 265 O TYR A 273 SHEET 3 AA4 4 LEU A 319 ILE A 326 1 O TYR A 325 N SER A 267 SHEET 4 AA4 4 GLY A 338 GLY A 344 -1 O GLY A 338 N ILE A 326 SHEET 1 AA5 6 VAL B 139 ALA B 141 0 SHEET 2 AA5 6 VAL B 25 VAL B 28 1 N VAL B 25 O ARG B 140 SHEET 3 AA5 6 VAL B 175 HIS B 180 1 O ILE B 178 N ILE B 26 SHEET 4 AA5 6 ILE B 203 LEU B 209 1 O ILE B 207 N LEU B 177 SHEET 5 AA5 6 VAL B 311 VAL B 317 1 O TYR B 312 N PHE B 206 SHEET 6 AA5 6 VAL B 367 HIS B 373 1 O HIS B 368 N VAL B 311 SHEET 1 AA6 3 PHE B 58 TRP B 61 0 SHEET 2 AA6 3 LEU B 36 LEU B 40 -1 N ALA B 38 O PHE B 58 SHEET 3 AA6 3 VAL B 96 ARG B 99 -1 O ARG B 99 N GLU B 37 SHEET 1 AA7 2 VAL B 82 ASN B 84 0 SHEET 2 AA7 2 LEU B 89 SER B 91 -1 O LEU B 89 N ASN B 84 SHEET 1 AA8 2 ASP B 227 ASN B 228 0 SHEET 2 AA8 2 ILE B 231 PRO B 232 -1 O ILE B 231 N ASN B 228 SHEET 1 AA9 4 ASN B 272 THR B 274 0 SHEET 2 AA9 4 VAL B 264 SER B 267 -1 N PHE B 265 O TYR B 273 SHEET 3 AA9 4 LEU B 319 ILE B 326 1 O TYR B 325 N SER B 267 SHEET 4 AA9 4 GLY B 338 GLY B 344 -1 O LEU B 340 N ARG B 323 SSBOND 1 CYS A 50 CYS A 74 1555 1555 2.07 SSBOND 2 CYS A 313 CYS A 356 1555 1555 2.08 SSBOND 3 CYS B 50 CYS B 74 1555 1555 2.07 SSBOND 4 CYS B 313 CYS B 356 1555 1555 2.09 LINK ND2 ASN A 84 C1 NAG A 501 1555 1555 1.45 LINK OG SER A 181 P1 H9A A 504 1555 1555 1.61 LINK ND2 ASN A 272 C1 NAG A 502 1555 1555 1.42 LINK ND2 ASN A 384 C1 NAG A 503 1555 1555 1.46 LINK ND2 ASN B 84 C1 NAG B 501 1555 1555 1.45 LINK OG SER B 181 P1 H9A B 503 1555 1555 1.62 LINK ND2 ASN B 272 C1 NAG B 502 1555 1555 1.43 LINK N HIS A 21 NI NI A 510 1555 2857 2.50 LINK ND1 HIS A 21 NI NI A 510 1555 2857 2.47 LINK NE2 HIS A 368 NI NI A 510 1555 1555 2.27 LINK ND1 HIS A 398 NI NI A 510 1555 1555 2.74 LINK NI NI A 510 O HOH A 613 1555 2857 2.79 CISPEP 1 TRP A 61 LEU A 62 0 -5.77 CISPEP 2 PHE A 331 PRO A 332 0 10.33 CISPEP 3 TRP B 61 LEU B 62 0 -6.64 CISPEP 4 PHE B 331 PRO B 332 0 -3.51 CRYST1 134.697 106.377 117.823 90.00 125.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007424 0.000000 0.005286 0.00000 SCALE2 0.000000 0.009401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010419 0.00000