data_6OT8 # _entry.id 6OT8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6OT8 WWPDB D_1000241306 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Parent variant of cytochrome cb562 further modified in this study.' _pdbx_database_related.db_id 3M4B _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6OT8 _pdbx_database_status.recvd_initial_deposition_date 2019-05-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Golub, E.' 1 0000-0001-7669-5652 'Esselborn, J.' 2 0000-0002-3499-8417 'Bailey, J.B.' 3 0000-0002-4659-8189 'Tezcan, F.A.' 4 0000-0002-4733-6500 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 578 _citation.language ? _citation.page_first 172 _citation.page_last 176 _citation.title 'Constructing protein polyhedra via orthogonal chemical interactions.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-019-1928-2 _citation.pdbx_database_id_PubMed 31969701 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Golub, E.' 1 ? primary 'Subramanian, R.H.' 2 ? primary 'Esselborn, J.' 3 ? primary 'Alberstein, R.G.' 4 ? primary 'Bailey, J.B.' 5 ? primary 'Chiong, J.A.' 6 ? primary 'Yan, X.' 7 ? primary 'Booth, T.' 8 ? primary 'Baker, T.S.' 9 ? primary 'Tezcan, F.A.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6OT8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 87.000 _cell.length_a_esd ? _cell.length_b 87.000 _cell.length_b_esd ? _cell.length_c 63.300 _cell.length_c_esd ? _cell.volume 414928.100 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Soluble cytochrome b562' 11796.218 1 ? D2E,D5E,E8H,V16H,Q25E,R34Q,L38Q,Q41W,K42S,K59S,H63S,D66W,I67E,V69I,D73N,D74A,K77H,N80K,E81Q,G82C,R98C,Y101C ? ? 2 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 4 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 5 non-polymer syn 'ACETOHYDROXAMIC ACID' 75.067 1 ? ? ? ? 6 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytochrome b-562' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AELEENMHTLNDNLKHIEKADNAAEVKDALTKMQAAAQDAWSATPPKLEDKSPDSPEMSDFRSGFWELIGQINAALHLAK QCKVKEAQAAAEQLKTTCNACHQKYR ; _entity_poly.pdbx_seq_one_letter_code_can ;AELEENMHTLNDNLKHIEKADNAAEVKDALTKMQAAAQDAWSATPPKLEDKSPDSPEMSDFRSGFWELIGQINAALHLAK QCKVKEAQAAAEQLKTTCNACHQKYR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 LEU n 1 4 GLU n 1 5 GLU n 1 6 ASN n 1 7 MET n 1 8 HIS n 1 9 THR n 1 10 LEU n 1 11 ASN n 1 12 ASP n 1 13 ASN n 1 14 LEU n 1 15 LYS n 1 16 HIS n 1 17 ILE n 1 18 GLU n 1 19 LYS n 1 20 ALA n 1 21 ASP n 1 22 ASN n 1 23 ALA n 1 24 ALA n 1 25 GLU n 1 26 VAL n 1 27 LYS n 1 28 ASP n 1 29 ALA n 1 30 LEU n 1 31 THR n 1 32 LYS n 1 33 MET n 1 34 GLN n 1 35 ALA n 1 36 ALA n 1 37 ALA n 1 38 GLN n 1 39 ASP n 1 40 ALA n 1 41 TRP n 1 42 SER n 1 43 ALA n 1 44 THR n 1 45 PRO n 1 46 PRO n 1 47 LYS n 1 48 LEU n 1 49 GLU n 1 50 ASP n 1 51 LYS n 1 52 SER n 1 53 PRO n 1 54 ASP n 1 55 SER n 1 56 PRO n 1 57 GLU n 1 58 MET n 1 59 SER n 1 60 ASP n 1 61 PHE n 1 62 ARG n 1 63 SER n 1 64 GLY n 1 65 PHE n 1 66 TRP n 1 67 GLU n 1 68 LEU n 1 69 ILE n 1 70 GLY n 1 71 GLN n 1 72 ILE n 1 73 ASN n 1 74 ALA n 1 75 ALA n 1 76 LEU n 1 77 HIS n 1 78 LEU n 1 79 ALA n 1 80 LYS n 1 81 GLN n 1 82 CYS n 1 83 LYS n 1 84 VAL n 1 85 LYS n 1 86 GLU n 1 87 ALA n 1 88 GLN n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 GLU n 1 93 GLN n 1 94 LEU n 1 95 LYS n 1 96 THR n 1 97 THR n 1 98 CYS n 1 99 ASN n 1 100 ALA n 1 101 CYS n 1 102 HIS n 1 103 GLN n 1 104 LYS n 1 105 TYR n 1 106 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 106 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene cybC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'pET20b for expression of BMC4 described here with background of pEC86 to provide machinery for c-type linkage of heme.' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'BL21(DE3)' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'pET20b for expression of BMC1 described here with background of pEC86 to provide machinery for c-type linkage of heme.' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET20b-BMC1/pEC86 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C562_ECOLX _struct_ref.pdbx_db_accession P0ABE7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKVKEAQAAAEQLKTTRNAYHQKYR ; _struct_ref.pdbx_align_begin 23 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6OT8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0ABE7 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 128 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6OT8 GLU A 2 ? UNP P0ABE7 ASP 24 'engineered mutation' 2 1 1 6OT8 GLU A 5 ? UNP P0ABE7 ASP 27 'engineered mutation' 5 2 1 6OT8 HIS A 8 ? UNP P0ABE7 GLU 30 'engineered mutation' 8 3 1 6OT8 HIS A 16 ? UNP P0ABE7 VAL 38 'engineered mutation' 16 4 1 6OT8 GLU A 25 ? UNP P0ABE7 GLN 47 'engineered mutation' 25 5 1 6OT8 GLN A 34 ? UNP P0ABE7 ARG 56 'engineered mutation' 34 6 1 6OT8 GLN A 38 ? UNP P0ABE7 LEU 60 'engineered mutation' 38 7 1 6OT8 TRP A 41 ? UNP P0ABE7 GLN 63 'engineered mutation' 41 8 1 6OT8 SER A 42 ? UNP P0ABE7 LYS 64 'engineered mutation' 42 9 1 6OT8 SER A 59 ? UNP P0ABE7 LYS 81 'engineered mutation' 59 10 1 6OT8 SER A 63 ? UNP P0ABE7 HIS 85 'engineered mutation' 63 11 1 6OT8 TRP A 66 ? UNP P0ABE7 ASP 88 'engineered mutation' 66 12 1 6OT8 GLU A 67 ? UNP P0ABE7 ILE 89 'engineered mutation' 67 13 1 6OT8 ILE A 69 ? UNP P0ABE7 VAL 91 'engineered mutation' 69 14 1 6OT8 ASN A 73 ? UNP P0ABE7 ASP 95 'engineered mutation' 73 15 1 6OT8 ALA A 74 ? UNP P0ABE7 ASP 96 'engineered mutation' 74 16 1 6OT8 HIS A 77 ? UNP P0ABE7 LYS 99 'engineered mutation' 77 17 1 6OT8 LYS A 80 ? UNP P0ABE7 ASN 102 'engineered mutation' 80 18 1 6OT8 GLN A 81 ? UNP P0ABE7 GLU 103 'engineered mutation' 81 19 1 6OT8 CYS A 82 ? UNP P0ABE7 GLY 104 'engineered mutation' 82 20 1 6OT8 CYS A 98 ? UNP P0ABE7 ARG 120 'engineered mutation' 98 21 1 6OT8 CYS A 101 ? UNP P0ABE7 TYR 123 'engineered mutation' 101 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HAE non-polymer . 'ACETOHYDROXAMIC ACID' ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6OT8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details 'Room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Protein solution of: 2.2 mM protein with 1.05 mM Fe and 3 mM Zn premixed 1 hour prior to crystallisation. Drops were 1ul + 1 ul of protein solution and the following mother liquor: 30% PEG400, 0.1 M HEPES pH 7.5, 0.2 M MgCl2 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Primary Mirror: flat internallyerror; Secondary Mirror: uncooled cyllindrical silicon bent into torroid' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Water-cooled flat double Si(111) Khozu' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.33312 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.33312 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 28.76 _reflns.entry_id 6OT8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 48.47 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 37652 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.66 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.51 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 26.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.054 _reflns.pdbx_Rpim_I_all 0.012 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.500 1.540 ? 1.230 ? ? ? ? 1334 42.200 ? ? ? ? 1.936 ? ? ? ? ? ? ? ? 13.792 ? ? ? ? 2.010 ? ? 1 1 0.488 ? 1.540 1.580 ? 1.840 ? ? ? ? 1683 53.900 ? ? ? ? 1.384 ? ? ? ? ? ? ? ? 14.989 ? ? ? ? 1.432 ? ? 2 1 0.640 ? 1.580 1.630 ? 2.710 ? ? ? ? 2046 68.800 ? ? ? ? 1.024 ? ? ? ? ? ? ? ? 16.525 ? ? ? ? 1.055 ? ? 3 1 0.792 ? 1.630 1.680 ? 3.900 ? ? ? ? 2597 88.500 ? ? ? ? 0.794 ? ? ? ? ? ? ? ? 18.765 ? ? ? ? 0.816 ? ? 4 1 0.903 ? 1.680 1.730 ? 5.610 ? ? ? ? 2710 95.600 ? ? ? ? 0.611 ? ? ? ? ? ? ? ? 21.198 ? ? ? ? 0.626 ? ? 5 1 0.959 ? 1.730 1.790 ? 7.450 ? ? ? ? 2612 95.700 ? ? ? ? 0.461 ? ? ? ? ? ? ? ? 20.819 ? ? ? ? 0.472 ? ? 6 1 0.976 ? 1.790 1.860 ? 10.200 ? ? ? ? 2548 95.900 ? ? ? ? 0.326 ? ? ? ? ? ? ? ? 19.760 ? ? ? ? 0.334 ? ? 7 1 0.986 ? 1.860 1.940 ? 14.700 ? ? ? ? 2465 96.700 ? ? ? ? 0.230 ? ? ? ? ? ? ? ? 21.311 ? ? ? ? 0.236 ? ? 8 1 0.994 ? 1.940 2.020 ? 19.990 ? ? ? ? 2370 96.900 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 21.123 ? ? ? ? 0.169 ? ? 9 1 0.997 ? 2.020 2.120 ? 26.230 ? ? ? ? 2281 97.500 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 19.876 ? ? ? ? 0.122 ? ? 10 1 0.998 ? 2.120 2.240 ? 34.370 ? ? ? ? 2165 97.600 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 19.874 ? ? ? ? 0.090 ? ? 11 1 0.999 ? 2.240 2.370 ? 39.500 ? ? ? ? 2056 98.100 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 20.795 ? ? ? ? 0.081 ? ? 12 1 0.999 ? 2.370 2.540 ? 45.840 ? ? ? ? 1922 98.100 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 20.477 ? ? ? ? 0.069 ? ? 13 1 0.999 ? 2.540 2.740 ? 49.220 ? ? ? ? 1837 98.900 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 18.909 ? ? ? ? 0.060 ? ? 14 1 0.999 ? 2.740 3.000 ? 58.340 ? ? ? ? 1663 98.800 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 20.459 ? ? ? ? 0.054 ? ? 15 1 0.999 ? 3.000 3.350 ? 62.240 ? ? ? ? 1522 99.300 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 19.993 ? ? ? ? 0.051 ? ? 16 1 0.999 ? 3.350 3.870 ? 62.280 ? ? ? ? 1334 99.600 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 18.113 ? ? ? ? 0.046 ? ? 17 1 0.999 ? 3.870 4.740 ? 66.670 ? ? ? ? 1140 99.700 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 20.179 ? ? ? ? 0.040 ? ? 18 1 1.000 ? 4.740 6.710 ? 65.920 ? ? ? ? 883 99.800 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 19.680 ? ? ? ? 0.039 ? ? 19 1 1.000 ? 6.710 48.47 ? 68.060 ? ? ? ? 484 99.600 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 19.878 ? ? ? ? 0.034 ? ? 20 1 1.000 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 46.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6OT8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 48.47 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 37642 _refine.ls_number_reflns_R_free 2798 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.63 _refine.ls_percent_reflns_R_free 7.43 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1922 _refine.ls_R_factor_R_free 0.2181 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1900 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.8943 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1992 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 48.47 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1000 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 824 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0121 ? 1010 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0840 ? 1393 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0502 ? 136 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0086 ? 190 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.7336 ? 607 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.50 1.53 . . 51 810 40.29 . . . 0.4151 . 0.3399 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.53 1.55 . . 90 934 47.45 . . . 0.3869 . 0.3067 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.55 1.58 . . 96 1135 57.23 . . . 0.3268 . 0.2861 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.58 1.62 . . 99 1311 66.76 . . . 0.3228 . 0.2862 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.62 1.65 . . 133 1624 81.61 . . . 0.3183 . 0.2703 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.65 1.69 . . 145 1830 93.78 . . . 0.3019 . 0.2704 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.69 1.73 . . 153 1938 95.92 . . . 0.2712 . 0.2598 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.73 1.78 . . 151 1897 95.52 . . . 0.2483 . 0.2580 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.78 1.83 . . 158 1901 95.99 . . . 0.2441 . 0.2624 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.83 1.89 . . 161 1921 96.34 . . . 0.3729 . 0.2467 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.89 1.96 . . 157 1907 96.72 . . . 0.2776 . 0.2381 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.96 2.04 . . 158 1937 96.95 . . . 0.2458 . 0.2335 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.04 2.13 . . 148 1927 97.74 . . . 0.2698 . 0.2123 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.13 2.24 . . 156 1949 97.45 . . . 0.2337 . 0.2041 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.24 2.38 . . 153 1935 98.31 . . . 0.2071 . 0.2028 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.38 2.56 . . 158 1971 98.29 . . . 0.2291 . 0.1923 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.56 2.82 . . 156 1971 98.84 . . . 0.1967 . 0.1860 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.82 3.23 . . 159 1963 98.97 . . . 0.2155 . 0.1910 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.23 4.07 . . 159 1978 99.49 . . . 0.2348 . 0.1582 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.07 48.49 . . 157 2005 99.68 . . . 0.1595 . 0.1606 . . . . . . . . . . # _struct.entry_id 6OT8 _struct.title 'Bimetallic hexameric cage design 4 (BMC4) from cytochrome cb562' _struct.pdbx_descriptor 'Soluble cytochrome b562' _struct.pdbx_model_details 'Keywords: Supramolecular assembly, protein cage, bimetallic, metal binding' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6OT8 _struct_keywords.text 'Supramolecular assembly, protein cage, bimetallic, metal binding, hydroxamic acid, METAL BINDING PROTEIN' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 2 ? LYS A 19 ? GLU A 2 LYS A 19 1 ? 18 HELX_P HELX_P2 AA2 ASN A 22 ? TRP A 41 ? ASN A 22 TRP A 41 1 ? 20 HELX_P HELX_P3 AA3 PRO A 45 ? GLU A 49 ? PRO A 45 GLU A 49 5 ? 5 HELX_P HELX_P4 AA4 SER A 55 ? GLN A 81 ? SER A 55 GLN A 81 1 ? 27 HELX_P HELX_P5 AA5 LYS A 83 ? ARG A 106 ? LYS A 83 ARG A 106 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A GLU 5 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 5 A ZN 202 1_555 ? ? ? ? ? ? ? 1.943 ? metalc2 metalc ? ? A MET 7 SD ? ? ? 1_555 B HEC . FE ? ? A MET 7 A HEC 201 1_555 ? ? ? ? ? ? ? 2.370 ? metalc3 metalc ? ? A HIS 8 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 8 A ZN 202 1_555 ? ? ? ? ? ? ? 1.981 ? metalc4 metalc ? ? A HIS 16 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 16 A ZN 204 1_555 ? ? ? ? ? ? ? 1.933 ? metalc5 metalc ? ? A ASP 21 OD1 ? ? ? 1_555 D ZN . ZN ? ? A ASP 21 A ZN 203 1_555 ? ? ? ? ? ? ? 1.776 ? metalc6 metalc ? ? A GLU 25 OE1 ? ? ? 1_555 D ZN . ZN ? ? A GLU 25 A ZN 203 1_555 ? ? ? ? ? ? ? 1.879 ? covale1 covale none ? A CYS 82 SG ? ? ? 1_555 G HAE . C1 A ? A CYS 82 A HAE 206 1_555 ? ? ? ? ? ? ? 1.827 ? covale2 covale none ? A CYS 82 SG ? ? ? 1_555 G HAE . C1 B ? A CYS 82 A HAE 206 1_555 ? ? ? ? ? ? ? 1.815 ? covale3 covale none ? A CYS 98 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 98 A HEC 201 1_555 ? ? ? ? ? ? ? 1.873 ? covale4 covale none ? A CYS 101 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 101 A HEC 201 1_555 ? ? ? ? ? ? ? 1.845 ? metalc7 metalc ? ? A HIS 102 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 102 A HEC 201 1_555 ? ? ? ? ? ? ? 2.042 ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 H HOH . O ? ? A ZN 203 A HOH 367 1_555 ? ? ? ? ? ? ? 2.103 ? metalc9 metalc ? ? F FE . FE A ? ? 1_555 G HAE . O2 A ? A FE 205 A HAE 206 1_555 ? ? ? ? ? ? ? 2.044 ? metalc10 metalc ? ? F FE . FE A ? ? 1_555 G HAE . N A ? A FE 205 A HAE 206 1_555 ? ? ? ? ? ? ? 2.703 ? metalc11 metalc ? ? F FE . FE A ? ? 1_555 G HAE . O A ? A FE 205 A HAE 206 1_555 ? ? ? ? ? ? ? 1.988 ? metalc12 metalc ? ? F FE . FE B ? ? 1_555 G HAE . O B ? A FE 205 A HAE 206 1_555 ? ? ? ? ? ? ? 1.932 ? metalc13 metalc ? ? F FE . FE B ? ? 1_555 G HAE . O2 B ? A FE 205 A HAE 206 1_555 ? ? ? ? ? ? ? 2.006 ? metalc14 metalc ? ? A GLU 2 OE2 C ? ? 1_555 E ZN . ZN ? ? A GLU 2 A ZN 204 12_565 ? ? ? ? ? ? ? 2.421 ? metalc15 metalc ? ? A GLU 5 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 5 A ZN 202 12_565 ? ? ? ? ? ? ? 1.948 ? metalc16 metalc ? ? A HIS 8 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 8 A ZN 202 12_565 ? ? ? ? ? ? ? 1.986 ? metalc17 metalc ? ? A HIS 77 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 77 A ZN 203 2_665 ? ? ? ? ? ? ? 1.965 ? metalc18 metalc ? ? F FE . FE A ? ? 1_555 G HAE . O2 A ? A FE 205 A HAE 206 2_665 ? ? ? ? ? ? ? 2.049 ? metalc19 metalc ? ? F FE . FE A ? ? 1_555 G HAE . O A ? A FE 205 A HAE 206 3_565 ? ? ? ? ? ? ? 1.993 ? metalc20 metalc ? ? F FE . FE B ? ? 1_555 G HAE . O B ? A FE 205 A HAE 206 3_565 ? ? ? ? ? ? ? 1.939 ? metalc21 metalc ? ? F FE . FE B ? ? 1_555 G HAE . O2 B ? A FE 205 A HAE 206 3_565 ? ? ? ? ? ? ? 2.010 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEC 201 ? 14 'binding site for residue HEC A 201' AC2 Software A ZN 202 ? 4 'binding site for residue ZN A 202' AC3 Software A ZN 203 ? 4 'binding site for residue ZN A 203' AC4 Software A ZN 204 ? 2 'binding site for residue ZN A 204' AC5 Software A FE 205 ? 3 'binding site for residue FE A 205' AC6 Software A HAE 206 ? 12 'binding site for residue HAE A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 GLU A 4 ? GLU A 4 . ? 1_555 ? 2 AC1 14 MET A 7 ? MET A 7 . ? 1_555 ? 3 AC1 14 HIS A 8 ? HIS A 8 . ? 1_555 ? 4 AC1 14 PRO A 45 ? PRO A 45 . ? 1_555 ? 5 AC1 14 PHE A 61 ? PHE A 61 . ? 1_555 ? 6 AC1 14 PHE A 65 ? PHE A 65 . ? 1_555 ? 7 AC1 14 CYS A 98 ? CYS A 98 . ? 1_555 ? 8 AC1 14 CYS A 101 ? CYS A 101 . ? 1_555 ? 9 AC1 14 HIS A 102 ? HIS A 102 . ? 1_555 ? 10 AC1 14 TYR A 105 ? TYR A 105 . ? 1_555 ? 11 AC1 14 ARG A 106 ? ARG A 106 . ? 1_555 ? 12 AC1 14 HOH H . ? HOH A 306 . ? 1_555 ? 13 AC1 14 HOH H . ? HOH A 312 . ? 1_555 ? 14 AC1 14 HOH H . ? HOH A 343 . ? 1_555 ? 15 AC2 4 GLU A 5 ? GLU A 5 . ? 12_565 ? 16 AC2 4 GLU A 5 ? GLU A 5 . ? 1_555 ? 17 AC2 4 HIS A 8 ? HIS A 8 . ? 12_565 ? 18 AC2 4 HIS A 8 ? HIS A 8 . ? 1_555 ? 19 AC3 4 ASP A 21 ? ASP A 21 . ? 1_555 ? 20 AC3 4 GLU A 25 ? GLU A 25 . ? 1_555 ? 21 AC3 4 HIS A 77 ? HIS A 77 . ? 3_565 ? 22 AC3 4 HOH H . ? HOH A 367 . ? 1_555 ? 23 AC4 2 GLU A 2 ? GLU A 2 . ? 12_565 ? 24 AC4 2 HIS A 16 ? HIS A 16 . ? 1_555 ? 25 AC5 3 HAE G . ? HAE A 206 . ? 3_565 ? 26 AC5 3 HAE G . ? HAE A 206 . ? 1_555 ? 27 AC5 3 HAE G . ? HAE A 206 . ? 2_665 ? 28 AC6 12 ALA A 23 ? ALA A 23 . ? 1_555 ? 29 AC6 12 LYS A 27 ? LYS A 27 . ? 1_555 ? 30 AC6 12 CYS A 82 ? CYS A 82 . ? 1_555 ? 31 AC6 12 FE F . ? FE A 205 . ? 1_555 ? 32 AC6 12 FE F . ? FE A 205 . ? 2_665 ? 33 AC6 12 FE F . ? FE A 205 . ? 3_565 ? 34 AC6 12 HOH H . ? HOH A 305 . ? 1_555 ? 35 AC6 12 HOH H . ? HOH A 358 . ? 1_555 ? 36 AC6 12 HOH H . ? HOH A 358 . ? 2_665 ? 37 AC6 12 HOH H . ? HOH A 413 . ? 3_565 ? 38 AC6 12 HOH H . ? HOH A 413 . ? 2_665 ? 39 AC6 12 HOH H . ? HOH A 413 . ? 1_555 ? # _atom_sites.entry_id 6OT8 _atom_sites.fract_transf_matrix[1][1] 0.011494 _atom_sites.fract_transf_matrix[1][2] 0.006636 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015798 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? FE ? ? 20.90327 4.99816 2.55100 38.46870 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 24.73122 6.32584 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 3.49406 27.47979 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 24.64596 5.25405 2.14387 29.76375 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _database_PDB_caveat.text 'B factor problems (B= 0.00 :ATOM 1623 CD1BLEU A 94)' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 HIS 102 102 102 HIS HIS A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ARG 106 106 106 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 201 150 HEC HEM A . C 3 ZN 1 202 155 ZN ZN A . D 3 ZN 1 203 156 ZN ZN A . E 3 ZN 1 204 154 ZN ZN A . F 4 FE 1 205 153 FE FE A . G 5 HAE 1 206 152 HAE HAE A . H 6 HOH 1 301 43 HOH HOH A . H 6 HOH 2 302 77 HOH HOH A . H 6 HOH 3 303 72 HOH HOH A . H 6 HOH 4 304 96 HOH HOH A . H 6 HOH 5 305 24 HOH HOH A . H 6 HOH 6 306 41 HOH HOH A . H 6 HOH 7 307 102 HOH HOH A . H 6 HOH 8 308 73 HOH HOH A . H 6 HOH 9 309 88 HOH HOH A . H 6 HOH 10 310 22 HOH HOH A . H 6 HOH 11 311 121 HOH HOH A . H 6 HOH 12 312 124 HOH HOH A . H 6 HOH 13 313 103 HOH HOH A . H 6 HOH 14 314 74 HOH HOH A . H 6 HOH 15 315 18 HOH HOH A . H 6 HOH 16 316 39 HOH HOH A . H 6 HOH 17 317 12 HOH HOH A . H 6 HOH 18 318 126 HOH HOH A . H 6 HOH 19 319 21 HOH HOH A . H 6 HOH 20 320 6 HOH HOH A . H 6 HOH 21 321 122 HOH HOH A . H 6 HOH 22 322 9 HOH HOH A . H 6 HOH 23 323 7 HOH HOH A . H 6 HOH 24 324 16 HOH HOH A . H 6 HOH 25 325 49 HOH HOH A . H 6 HOH 26 326 8 HOH HOH A . H 6 HOH 27 327 50 HOH HOH A . H 6 HOH 28 328 87 HOH HOH A . H 6 HOH 29 329 40 HOH HOH A . H 6 HOH 30 330 84 HOH HOH A . H 6 HOH 31 331 44 HOH HOH A . H 6 HOH 32 332 80 HOH HOH A . H 6 HOH 33 333 54 HOH HOH A . H 6 HOH 34 334 14 HOH HOH A . H 6 HOH 35 335 65 HOH HOH A . H 6 HOH 36 336 38 HOH HOH A . H 6 HOH 37 337 66 HOH HOH A . H 6 HOH 38 338 62 HOH HOH A . H 6 HOH 39 339 3 HOH HOH A . H 6 HOH 40 340 119 HOH HOH A . H 6 HOH 41 341 52 HOH HOH A . H 6 HOH 42 342 11 HOH HOH A . H 6 HOH 43 343 100 HOH HOH A . H 6 HOH 44 344 57 HOH HOH A . H 6 HOH 45 345 111 HOH HOH A . H 6 HOH 46 346 115 HOH HOH A . H 6 HOH 47 347 46 HOH HOH A . H 6 HOH 48 348 110 HOH HOH A . H 6 HOH 49 349 15 HOH HOH A . H 6 HOH 50 350 78 HOH HOH A . H 6 HOH 51 351 68 HOH HOH A . H 6 HOH 52 352 82 HOH HOH A . H 6 HOH 53 353 69 HOH HOH A . H 6 HOH 54 354 19 HOH HOH A . H 6 HOH 55 355 2 HOH HOH A . H 6 HOH 56 356 13 HOH HOH A . H 6 HOH 57 357 53 HOH HOH A . H 6 HOH 58 358 92 HOH HOH A . H 6 HOH 59 359 17 HOH HOH A . H 6 HOH 60 360 70 HOH HOH A . H 6 HOH 61 361 42 HOH HOH A . H 6 HOH 62 362 63 HOH HOH A . H 6 HOH 63 363 105 HOH HOH A . H 6 HOH 64 364 26 HOH HOH A . H 6 HOH 65 365 35 HOH HOH A . H 6 HOH 66 366 33 HOH HOH A . H 6 HOH 67 367 1 HOH HOH A . H 6 HOH 68 368 37 HOH HOH A . H 6 HOH 69 369 10 HOH HOH A . H 6 HOH 70 370 125 HOH HOH A . H 6 HOH 71 371 45 HOH HOH A . H 6 HOH 72 372 113 HOH HOH A . H 6 HOH 73 373 97 HOH HOH A . H 6 HOH 74 374 91 HOH HOH A . H 6 HOH 75 375 67 HOH HOH A . H 6 HOH 76 376 89 HOH HOH A . H 6 HOH 77 377 64 HOH HOH A . H 6 HOH 78 378 108 HOH HOH A . H 6 HOH 79 379 5 HOH HOH A . H 6 HOH 80 380 4 HOH HOH A . H 6 HOH 81 381 36 HOH HOH A . H 6 HOH 82 382 60 HOH HOH A . H 6 HOH 83 383 106 HOH HOH A . H 6 HOH 84 384 32 HOH HOH A . H 6 HOH 85 385 120 HOH HOH A . H 6 HOH 86 386 95 HOH HOH A . H 6 HOH 87 387 104 HOH HOH A . H 6 HOH 88 388 25 HOH HOH A . H 6 HOH 89 389 27 HOH HOH A . H 6 HOH 90 390 79 HOH HOH A . H 6 HOH 91 391 75 HOH HOH A . H 6 HOH 92 392 99 HOH HOH A . H 6 HOH 93 393 55 HOH HOH A . H 6 HOH 94 394 31 HOH HOH A . H 6 HOH 95 395 29 HOH HOH A . H 6 HOH 96 396 20 HOH HOH A . H 6 HOH 97 397 118 HOH HOH A . H 6 HOH 98 398 112 HOH HOH A . H 6 HOH 99 399 94 HOH HOH A . H 6 HOH 100 400 71 HOH HOH A . H 6 HOH 101 401 107 HOH HOH A . H 6 HOH 102 402 59 HOH HOH A . H 6 HOH 103 403 86 HOH HOH A . H 6 HOH 104 404 98 HOH HOH A . H 6 HOH 105 405 123 HOH HOH A . H 6 HOH 106 406 28 HOH HOH A . H 6 HOH 107 407 90 HOH HOH A . H 6 HOH 108 408 93 HOH HOH A . H 6 HOH 109 409 81 HOH HOH A . H 6 HOH 110 410 30 HOH HOH A . H 6 HOH 111 411 83 HOH HOH A . H 6 HOH 112 412 34 HOH HOH A . H 6 HOH 113 413 127 HOH HOH A . H 6 HOH 114 414 48 HOH HOH A . H 6 HOH 115 415 51 HOH HOH A . H 6 HOH 116 416 47 HOH HOH A . H 6 HOH 117 417 61 HOH HOH A . H 6 HOH 118 418 58 HOH HOH A . H 6 HOH 119 419 101 HOH HOH A . H 6 HOH 120 420 56 HOH HOH A . H 6 HOH 121 421 23 HOH HOH A . H 6 HOH 122 422 109 HOH HOH A . H 6 HOH 123 423 76 HOH HOH A . H 6 HOH 124 424 85 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 17480 ? 1 MORE -759 ? 1 'SSA (A^2)' 29030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 43.5000000000 0.8660254038 -0.5000000000 0.0000000000 75.3442101292 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -43.5000000000 -0.8660254038 -0.5000000000 0.0000000000 75.3442101292 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 43.5000000000 -0.8660254038 -0.5000000000 0.0000000000 75.3442101292 0.0000000000 0.0000000000 -1.0000000000 31.6500000000 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.6500000000 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5000000000 0.8660254038 0.0000000000 -43.5000000000 0.8660254038 -0.5000000000 0.0000000000 75.3442101292 0.0000000000 0.0000000000 -1.0000000000 31.6500000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A ZN 202 ? C ZN . 2 1 A FE 205 ? F FE . 3 1 A HOH 413 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 115.2 ? 2 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 0.0 ? 3 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 115.2 ? 4 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 115.2 ? 5 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 0.0 ? 6 OE1 ? A GLU 5 ? A GLU 5 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 8 ? A HIS 8 ? 1_555 115.2 ? 7 SD ? A MET 7 ? A MET 7 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NA ? B HEC . ? A HEC 201 ? 1_555 89.9 ? 8 SD ? A MET 7 ? A MET 7 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NB ? B HEC . ? A HEC 201 ? 1_555 84.9 ? 9 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NB ? B HEC . ? A HEC 201 ? 1_555 91.9 ? 10 SD ? A MET 7 ? A MET 7 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 89.9 ? 11 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 178.8 ? 12 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NC ? B HEC . ? A HEC 201 ? 1_555 89.3 ? 13 SD ? A MET 7 ? A MET 7 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 93.1 ? 14 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 90.4 ? 15 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 176.9 ? 16 NC ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 ND ? B HEC . ? A HEC 201 ? 1_555 88.4 ? 17 SD ? A MET 7 ? A MET 7 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 102 ? A HIS 102 ? 1_555 172.6 ? 18 NA ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 102 ? A HIS 102 ? 1_555 92.2 ? 19 NB ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 102 ? A HIS 102 ? 1_555 88.0 ? 20 NC ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 102 ? A HIS 102 ? 1_555 88.2 ? 21 ND ? B HEC . ? A HEC 201 ? 1_555 FE ? B HEC . ? A HEC 201 ? 1_555 NE2 ? A HIS 102 ? A HIS 102 ? 1_555 94.0 ? 22 NE2 ? A HIS 16 ? A HIS 16 ? 1_555 ZN ? E ZN . ? A ZN 204 ? 1_555 OE2 C A GLU 2 ? A GLU 2 ? 1_555 153.2 ? 23 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 OE1 ? A GLU 25 ? A GLU 25 ? 1_555 114.4 ? 24 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? H HOH . ? A HOH 367 ? 1_555 101.6 ? 25 OE1 ? A GLU 25 ? A GLU 25 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 O ? H HOH . ? A HOH 367 ? 1_555 113.4 ? 26 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 ? A HIS 77 ? A HIS 77 ? 1_555 73.8 ? 27 OE1 ? A GLU 25 ? A GLU 25 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 ? A HIS 77 ? A HIS 77 ? 1_555 40.6 ? 28 O ? H HOH . ? A HOH 367 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 NE2 ? A HIS 77 ? A HIS 77 ? 1_555 126.4 ? 29 O2 A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 N A G HAE . ? A HAE 206 ? 1_555 56.1 ? 30 O2 A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 1_555 86.1 ? 31 N A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 1_555 30.1 ? 32 O2 A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O2 A G HAE . ? A HAE 206 ? 2_665 93.3 ? 33 N A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O2 A G HAE . ? A HAE 206 ? 2_665 91.5 ? 34 O A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O2 A G HAE . ? A HAE 206 ? 2_665 92.4 ? 35 O2 A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 3_565 92.4 ? 36 N A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 3_565 92.5 ? 37 O A G HAE . ? A HAE 206 ? 1_555 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 3_565 89.0 ? 38 O2 A G HAE . ? A HAE 206 ? 2_665 FE A F FE . ? A FE 205 ? 1_555 O A G HAE . ? A HAE 206 ? 3_565 174.3 ? 39 O B G HAE . ? A HAE 206 ? 1_555 FE B F FE . ? A FE 205 ? 1_555 O2 B G HAE . ? A HAE 206 ? 1_555 89.8 ? 40 O B G HAE . ? A HAE 206 ? 1_555 FE B F FE . ? A FE 205 ? 1_555 O B G HAE . ? A HAE 206 ? 3_565 75.1 ? 41 O2 B G HAE . ? A HAE 206 ? 1_555 FE B F FE . ? A FE 205 ? 1_555 O B G HAE . ? A HAE 206 ? 3_565 159.6 ? 42 O B G HAE . ? A HAE 206 ? 1_555 FE B F FE . ? A FE 205 ? 1_555 O2 B G HAE . ? A HAE 206 ? 3_565 114.9 ? 43 O2 B G HAE . ? A HAE 206 ? 1_555 FE B F FE . ? A FE 205 ? 1_555 O2 B G HAE . ? A HAE 206 ? 3_565 84.6 ? 44 O B G HAE . ? A HAE 206 ? 3_565 FE B F FE . ? A FE 205 ? 1_555 O2 B G HAE . ? A HAE 206 ? 3_565 89.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-29 2 'Structure model' 1 1 2020-02-05 3 'Structure model' 1 2 2020-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A SER 52 ? ? H A SER 55 ? ? 1.48 2 1 SG A CYS 101 ? ? HAC A HEC 201 ? ? 1.53 3 1 H A LYS 51 ? ? O A HOH 304 ? ? 1.60 4 1 O A HOH 321 ? ? O A HOH 374 ? ? 1.87 5 1 OD1 A ASP 28 ? A O A HOH 301 ? ? 2.02 6 1 O A HOH 345 ? ? O A HOH 398 ? ? 2.07 7 1 O A HOH 385 ? ? O A HOH 386 ? ? 2.12 8 1 OE2 A GLU 4 ? B O A HOH 302 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OG _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SER _pdbx_validate_symm_contact.auth_seq_id_1 59 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OG _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 59 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 11_555 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 50 ? ? -98.80 36.96 2 1 PRO A 53 ? ? -37.07 -36.87 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 424 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.81 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' DMR-1602537 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0003844 2 'European Molecular Biology Organization (EMBO)' 'European Union' 'ALTF 1336-2015' 3 'German Research Foundation (DFG)' Germany 393131496 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 'ZINC ION' ZN 4 'FE (III) ION' FE 5 'ACETOHYDROXAMIC ACID' HAE 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 63 2 2' _space_group.name_Hall 'P 6c 2c' _space_group.IT_number 182 _space_group.crystal_system hexagonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/2 3 y,-x+y,z+1/2 4 -y,x-y,z 5 -x+y,-x,z 6 x-y,-y,-z 7 -x,-x+y,-z 8 -x,-y,z+1/2 9 y,x,-z 10 -y,-x,-z+1/2 11 -x+y,y,-z+1/2 12 x,x-y,-z+1/2 #