HEADER RNA BINDING PROTEIN 25-MAY-19 6P3Y TITLE CRYSTAL STRUCTURE OF FULL LENGTH APOBEC3G E/Q (PH 7.4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- COMPND 3 LIKE 3G; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: APOBEC3G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC3G, HIV, CYTIDINE DEAMINASES, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YANG,S.X.LI,X.S.CHEN REVDAT 2 16-AUG-23 6P3Y 1 AUTHOR LINK REVDAT 1 12-FEB-20 6P3Y 0 JRNL AUTH H.YANG,F.ITO,A.D.WOLFE,S.LI,N.MOHAMMADZADEH,R.P.LOVE,M.YAN, JRNL AUTH 2 B.ZIRKLE,A.GABA,L.CHELICO,X.S.CHEN JRNL TITL UNDERSTANDING THE STRUCTURAL BASIS OF HIV-1 RESTRICTION BY JRNL TITL 2 THE FULL LENGTH DOUBLE-DOMAIN APOBEC3G. JRNL REF NAT COMMUN V. 11 632 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32005813 JRNL DOI 10.1038/S41467-020-14377-Y REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 38528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1732 - 6.1862 1.00 2722 132 0.1915 0.2091 REMARK 3 2 6.1862 - 4.9132 1.00 2680 161 0.1959 0.2281 REMARK 3 3 4.9132 - 4.2931 1.00 2680 144 0.1472 0.2013 REMARK 3 4 4.2931 - 3.9009 1.00 2678 145 0.1635 0.1883 REMARK 3 5 3.9009 - 3.6215 1.00 2675 149 0.1745 0.2192 REMARK 3 6 3.6215 - 3.4081 1.00 2634 146 0.1836 0.1963 REMARK 3 7 3.4081 - 3.2375 1.00 2659 159 0.1948 0.2590 REMARK 3 8 3.2375 - 3.0967 1.00 2674 147 0.2231 0.2745 REMARK 3 9 3.0967 - 2.9775 1.00 2649 153 0.2350 0.2832 REMARK 3 10 2.9775 - 2.8748 1.00 2709 143 0.2317 0.2809 REMARK 3 11 2.8748 - 2.7849 0.99 2643 154 0.2484 0.2614 REMARK 3 12 2.7849 - 2.7053 0.97 2558 129 0.2519 0.3154 REMARK 3 13 2.7053 - 2.6341 0.91 2442 131 0.2694 0.3828 REMARK 3 14 2.6341 - 2.5699 0.79 2110 122 0.2787 0.3644 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7619 -5.2907 32.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.5829 T22: 0.3887 REMARK 3 T33: 0.3100 T12: 0.0107 REMARK 3 T13: 0.1364 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.9746 L22: 3.7308 REMARK 3 L33: 4.9938 L12: 0.2468 REMARK 3 L13: -1.8847 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.0102 S13: -0.0028 REMARK 3 S21: 0.3159 S22: 0.0308 S23: 0.1546 REMARK 3 S31: 0.2059 S32: 0.1275 S33: -0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9448 20.6131 -4.0569 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.2614 REMARK 3 T33: 0.2738 T12: 0.0534 REMARK 3 T13: -0.0463 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.5386 L22: 7.6980 REMARK 3 L33: 1.4669 L12: 1.5983 REMARK 3 L13: -0.5316 L23: -1.1826 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.0493 S13: 0.4709 REMARK 3 S21: -0.9233 S22: 0.0541 S23: 0.7100 REMARK 3 S31: -0.2042 S32: -0.0645 S33: 0.0718 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2622 3.1025 6.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.4006 REMARK 3 T33: 0.4823 T12: 0.0341 REMARK 3 T13: 0.0435 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 5.3339 L22: 2.5951 REMARK 3 L33: 0.4695 L12: -0.4901 REMARK 3 L13: 1.4208 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.1430 S13: -0.1645 REMARK 3 S21: 0.0544 S22: -0.0486 S23: -0.5927 REMARK 3 S31: 0.0955 S32: 0.1628 S33: 0.0110 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0327 5.8097 6.1492 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.3849 REMARK 3 T33: 0.6677 T12: 0.0256 REMARK 3 T13: -0.0025 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 5.7625 L22: 2.9799 REMARK 3 L33: 1.2576 L12: -0.0986 REMARK 3 L13: -0.1057 L23: 0.1209 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.0500 S13: 0.2189 REMARK 3 S21: -0.0117 S22: 0.0391 S23: -0.4571 REMARK 3 S31: -0.0175 S32: -0.0571 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8091 -17.4930 2.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.2679 REMARK 3 T33: 0.2856 T12: 0.0400 REMARK 3 T13: -0.0578 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.4704 L22: 7.3158 REMARK 3 L33: 2.2591 L12: 1.1565 REMARK 3 L13: -0.5743 L23: -0.8239 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: 0.0218 S13: -0.1769 REMARK 3 S21: -0.8915 S22: 0.0532 S23: 0.5249 REMARK 3 S31: 0.4201 S32: -0.0146 S33: 0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 4 THROUGH 14 OR RESID REMARK 3 16 THROUGH 41 OR RESID 43 THROUGH 193 OR REMARK 3 RESID 195 THROUGH 242 OR RESID 244 REMARK 3 THROUGH 701)) REMARK 3 SELECTION : (CHAIN B AND (RESID 4 THROUGH 14 OR RESID REMARK 3 16 THROUGH 41 OR RESID 43 THROUGH 193 OR REMARK 3 RESID 195 THROUGH 242 OR RESID 244 REMARK 3 THROUGH 701)) REMARK 3 ATOM PAIRS NUMBER : 2138 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS, PH 7.4 1.9 M AMMONIUM REMARK 280 SULFATE 25 MM MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.92450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 246 REMARK 465 PRO A 247 REMARK 465 ASN A 248 REMARK 465 ILE A 249 REMARK 465 HIS A 250 REMARK 465 GLY A 251 REMARK 465 PHE A 252 REMARK 465 PRO A 253 REMARK 465 LYS A 254 REMARK 465 GLY A 255 REMARK 465 ARG A 256 REMARK 465 HIS A 257 REMARK 465 ALA A 258 REMARK 465 GLN A 259 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 246 REMARK 465 PRO B 247 REMARK 465 ASN B 248 REMARK 465 ILE B 249 REMARK 465 HIS B 250 REMARK 465 GLY B 251 REMARK 465 PHE B 252 REMARK 465 PRO B 253 REMARK 465 LYS B 254 REMARK 465 GLY B 255 REMARK 465 ARG B 256 REMARK 465 HIS B 257 REMARK 465 ALA B 258 REMARK 465 GLN B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 176 O HOH B 801 1.82 REMARK 500 OE2 GLU B 191 O HOH B 802 1.93 REMARK 500 O HOH A 844 O HOH A 856 1.93 REMARK 500 O VAL B 350 O HOH B 803 2.00 REMARK 500 OH TYR A 154 O HOH A 801 2.03 REMARK 500 ND2 ASN B 236 O HOH B 804 2.06 REMARK 500 OE1 GLN A 132 O HOH A 802 2.09 REMARK 500 O PRO A 25 O HOH A 803 2.10 REMARK 500 OG1 THR A 183 O HOH A 804 2.10 REMARK 500 O ILE B 308 O HOH B 805 2.13 REMARK 500 O HOH A 801 O HOH A 851 2.14 REMARK 500 O LEU A 71 O HOH A 805 2.14 REMARK 500 OE1 GLU A 191 O HOH B 802 2.15 REMARK 500 NH2 ARG A 239 O HOH A 806 2.16 REMARK 500 ND2 ASN A 236 O HOH A 807 2.16 REMARK 500 O VAL A 114 O HOH A 808 2.18 REMARK 500 NH1 ARG B 72 O HOH B 806 2.19 REMARK 500 NH1 ARG A 72 O HOH A 809 2.19 REMARK 500 O HOH B 842 O HOH B 852 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 850 O HOH B 833 2555 1.98 REMARK 500 OH TYR A 125 NH2 ARG B 373 1554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 27 73.30 -157.47 REMARK 500 PRO A 60 170.41 -43.82 REMARK 500 LYS A 61 84.97 62.73 REMARK 500 ARG A 168 70.69 -38.92 REMARK 500 CYS A 261 130.36 75.48 REMARK 500 PHE A 268 15.17 -61.41 REMARK 500 GLN A 274 -129.68 166.05 REMARK 500 CYS A 287 173.10 -55.79 REMARK 500 GLU A 302 -48.74 -28.28 REMARK 500 ASN A 380 -64.05 -102.16 REMARK 500 ASN B 23 30.48 -99.40 REMARK 500 LEU B 27 74.59 -156.62 REMARK 500 PRO B 60 168.68 -44.22 REMARK 500 LYS B 61 89.10 60.10 REMARK 500 ARG B 168 75.20 -46.95 REMARK 500 TRP B 211 133.99 -39.57 REMARK 500 VAL B 212 -5.16 -141.94 REMARK 500 CYS B 261 129.51 70.25 REMARK 500 GLN B 274 -129.66 165.35 REMARK 500 CYS B 287 172.93 -55.71 REMARK 500 GLU B 302 -50.86 -26.75 REMARK 500 ASN B 380 -64.99 -101.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 CYS A 97 SG 113.2 REMARK 620 3 CYS A 100 SG 105.1 102.2 REMARK 620 4 HOH A 839 O 88.0 120.4 126.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 65 ND1 REMARK 620 2 CYS B 97 SG 110.9 REMARK 620 3 CYS B 100 SG 106.4 96.4 REMARK 620 4 HOH B 818 O 96.9 119.6 126.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 DBREF 6P3Y A 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 DBREF 6P3Y B 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 SEQADV 6P3Y GLY A -6 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y PRO A -5 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY A -4 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY A -3 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y SER A -2 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY A -1 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY A 0 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y ASP A 128 UNP M1GSK9 LYS 128 LINKER SEQADV 6P3Y ALA A 139 UNP M1GSK9 CYS 139 LINKER SEQADV 6P3Y GLU A 140 UNP M1GSK9 GLN 140 LINKER SEQADV 6P3Y ALA A 141 UNP M1GSK9 LYS 141 LINKER SEQADV 6P3Y GLY A 142 UNP M1GSK9 ARG 142 LINKER SEQADV 6P3Y A UNP M1GSK9 ASP 143 DELETION SEQADV 6P3Y A UNP M1GSK9 GLY 144 DELETION SEQADV 6P3Y A UNP M1GSK9 PRO 145 DELETION SEQADV 6P3Y A UNP M1GSK9 HIS 146 DELETION SEQADV 6P3Y GLN A 259 UNP M1GSK9 GLU 259 CONFLICT SEQADV 6P3Y GLY B -6 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y PRO B -5 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY B -4 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY B -3 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y SER B -2 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY B -1 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y GLY B 0 UNP M1GSK9 EXPRESSION TAG SEQADV 6P3Y ASP B 128 UNP M1GSK9 LYS 128 LINKER SEQADV 6P3Y ALA B 139 UNP M1GSK9 CYS 139 LINKER SEQADV 6P3Y GLU B 140 UNP M1GSK9 GLN 140 LINKER SEQADV 6P3Y ALA B 141 UNP M1GSK9 LYS 141 LINKER SEQADV 6P3Y GLY B 142 UNP M1GSK9 ARG 142 LINKER SEQADV 6P3Y B UNP M1GSK9 ASP 143 DELETION SEQADV 6P3Y B UNP M1GSK9 GLY 144 DELETION SEQADV 6P3Y B UNP M1GSK9 PRO 145 DELETION SEQADV 6P3Y B UNP M1GSK9 HIS 146 DELETION SEQADV 6P3Y GLN B 259 UNP M1GSK9 GLU 259 CONFLICT SEQRES 1 A 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 A 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 A 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 A 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 A 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 A 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 A 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 A 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 A 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 A 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 A 386 TYR TYR PHE TRP ASP PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 A 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 A 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 A 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 A 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 A 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 A 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 A 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 A 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 A 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 A 386 ALA GLN LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 A 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 A 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 A 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 A 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 A 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 A 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 A 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 A 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 A 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN SEQRES 1 B 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 B 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 B 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 B 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 B 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 B 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 B 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 B 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 B 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 B 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 B 386 TYR TYR PHE TRP ASP PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 B 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 B 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 B 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 B 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 B 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 B 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 B 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 B 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 B 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 B 386 ALA GLN LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 B 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 B 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 B 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 B 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 B 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 B 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 B 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 B 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 B 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN HET ZN A 701 1 HET ZN B 701 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *113(H2 O) HELIX 1 AA1 GLN A 4 VAL A 9 1 6 HELIX 2 AA2 ASP A 13 PHE A 21 1 9 HELIX 3 AA3 LYS A 61 TYR A 64 5 4 HELIX 4 AA4 HIS A 65 GLN A 79 1 15 HELIX 5 AA5 CYS A 97 ASP A 111 1 15 HELIX 6 AA6 ASP A 128 GLY A 142 1 15 HELIX 7 AA7 ASN A 153 VAL A 165 1 13 HELIX 8 AA8 ASN A 177 HIS A 195 1 19 HELIX 9 AA9 ASP A 198 PHE A 206 1 9 HELIX 10 AB1 ASN A 236 ARG A 239 5 4 HELIX 11 AB2 CYS A 261 ILE A 266 5 6 HELIX 12 AB3 CYS A 287 ASN A 300 1 14 HELIX 13 AB4 ARG A 319 ASP A 330 1 12 HELIX 14 AB5 ASN A 338 VAL A 350 1 13 HELIX 15 AB6 GLY A 362 GLN A 379 1 18 HELIX 16 AB7 ILE B 5 VAL B 9 1 5 HELIX 17 AB8 ASP B 13 PHE B 21 1 9 HELIX 18 AB9 LYS B 61 TYR B 64 5 4 HELIX 19 AC1 HIS B 65 GLN B 79 1 15 HELIX 20 AC2 CYS B 97 ASP B 111 1 15 HELIX 21 AC3 ASP B 128 GLY B 142 1 15 HELIX 22 AC4 ASN B 153 VAL B 165 1 13 HELIX 23 AC5 ASN B 177 HIS B 195 1 19 HELIX 24 AC6 ASP B 198 ASN B 207 1 10 HELIX 25 AC7 ASN B 236 ARG B 239 5 4 HELIX 26 AC8 CYS B 261 ILE B 266 5 6 HELIX 27 AC9 CYS B 287 ASN B 300 1 14 HELIX 28 AD1 ARG B 319 ASP B 330 1 12 HELIX 29 AD2 ASN B 338 VAL B 350 1 13 HELIX 30 AD3 GLY B 362 GLN B 379 1 18 SHEET 1 AA1 5 ASP A 50 LYS A 57 0 SHEET 2 AA1 5 THR A 32 THR A 41 -1 N LEU A 35 O PHE A 54 SHEET 3 AA1 5 TYR A 86 TRP A 94 -1 O TYR A 91 N CYS A 36 SHEET 4 AA1 5 VAL A 114 ARG A 122 1 O THR A 115 N VAL A 88 SHEET 5 AA1 5 THR A 148 ILE A 151 1 O THR A 148 N LEU A 116 SHEET 1 AA2 3 TRP A 232 PRO A 234 0 SHEET 2 AA2 3 THR A 218 LEU A 227 -1 N ARG A 226 O VAL A 233 SHEET 3 AA2 3 GLY A 240 ASN A 244 -1 O GLY A 240 N TYR A 222 SHEET 1 AA3 5 TRP A 232 PRO A 234 0 SHEET 2 AA3 5 THR A 218 LEU A 227 -1 N ARG A 226 O VAL A 233 SHEET 3 AA3 5 TYR A 276 TRP A 284 -1 O PHE A 281 N CYS A 221 SHEET 4 AA3 5 VAL A 304 ARG A 312 1 O CYS A 307 N CYS A 280 SHEET 5 AA3 5 LYS A 333 MET A 336 1 O LYS A 333 N ILE A 308 SHEET 1 AA4 5 ASP B 50 LYS B 57 0 SHEET 2 AA4 5 THR B 32 THR B 41 -1 N LEU B 35 O PHE B 54 SHEET 3 AA4 5 TYR B 86 TRP B 94 -1 O TYR B 91 N CYS B 36 SHEET 4 AA4 5 VAL B 114 ARG B 122 1 O THR B 115 N VAL B 88 SHEET 5 AA4 5 THR B 148 ILE B 151 1 O THR B 148 N LEU B 116 SHEET 1 AA5 3 TRP B 232 PRO B 234 0 SHEET 2 AA5 3 THR B 218 LEU B 227 -1 N ARG B 226 O VAL B 233 SHEET 3 AA5 3 GLY B 240 ASN B 244 -1 O LEU B 242 N LEU B 220 SHEET 1 AA6 5 TRP B 232 PRO B 234 0 SHEET 2 AA6 5 THR B 218 LEU B 227 -1 N ARG B 226 O VAL B 233 SHEET 3 AA6 5 TYR B 276 TRP B 284 -1 O PHE B 281 N CYS B 221 SHEET 4 AA6 5 VAL B 304 ARG B 312 1 O CYS B 307 N CYS B 280 SHEET 5 AA6 5 LYS B 333 MET B 336 1 O LYS B 333 N ILE B 308 LINK ND1 HIS A 65 ZN ZN A 701 1555 1555 2.05 LINK SG CYS A 97 ZN ZN A 701 1555 1555 2.45 LINK SG CYS A 100 ZN ZN A 701 1555 1555 2.30 LINK ZN ZN A 701 O HOH A 839 1555 1555 2.11 LINK ND1 HIS B 65 ZN ZN B 701 1555 1555 2.06 LINK SG CYS B 97 ZN ZN B 701 1555 1555 2.47 LINK SG CYS B 100 ZN ZN B 701 1555 1555 2.24 LINK ZN ZN B 701 O HOH B 818 1555 1555 2.15 SITE 1 AC1 4 HIS A 65 CYS A 97 CYS A 100 HOH A 839 SITE 1 AC2 4 HIS B 65 CYS B 97 CYS B 100 HOH B 818 CRYST1 67.695 153.849 67.728 90.00 116.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014772 0.000000 0.007323 0.00000 SCALE2 0.000000 0.006500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016480 0.00000