data_6PSA # _entry.id 6PSA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6PSA WWPDB D_1000242979 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PSA _pdbx_database_status.recvd_initial_deposition_date 2019-07-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hill, C.P.' 1 ? 'Whitby, F.G.' 2 ? 'Kay, M.' 3 ? 'Weinstock, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Retrovirology _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-4690 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 28 _citation.page_last 28 _citation.title 'Characterization of resistance to a potent D-peptide HIV entry inhibitor.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s12977-019-0489-7 _citation.pdbx_database_id_PubMed 31640718 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, A.R.' 1 ? primary 'Weinstock, M.T.' 2 ? primary 'Siglin, A.E.' 3 ? primary 'Whitby, F.G.' 4 ? primary 'Francis, J.N.' 5 ? primary 'Hill, C.P.' 6 ? primary 'Eckert, D.M.' 7 ? primary 'Root, M.J.' 8 ? primary 'Kay, M.S.' 9 0000-0003-3186-9684 # _cell.entry_id 6PSA _cell.length_a 48.843 _cell.length_b 48.843 _cell.length_c 67.634 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PSA _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PIE12 D-peptide' 2029.301 1 ? ? ? ? 2 polymer syn IQN17 5542.534 1 ? Q577R 'GP41 HYDROPHOBIC POCKET, RESIDUES 565-581, GCN4, RESIDUES 249-276' ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(D)' no yes ;(ACE)(DLY)G(DHI)(DPR)(DCY)(DAS)(DTY)(DPR)(DGL)(DTR)(DGN)(DTR)(DLE)(DCY)(DGL) (DLE)(NH2) ; XKGHPCDYPEWQWLCELX H ? 2 'polypeptide(L)' no yes '(ACE)R(MSE)KQIEDKIEEIESKQKKIENEIARIKKLLQLTVWGIKQLRARIL(NH2)' XRMKQIEDKIEEIESKQKKIENEIARIKKLLQLTVWGIKQLRARILX A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 DLY n 1 3 GLY n 1 4 DHI n 1 5 DPR n 1 6 DCY n 1 7 DAS n 1 8 DTY n 1 9 DPR n 1 10 DGL n 1 11 DTR n 1 12 DGN n 1 13 DTR n 1 14 DLE n 1 15 DCY n 1 16 DGL n 1 17 DLE n 1 18 NH2 n 2 1 ACE n 2 2 ARG n 2 3 MSE n 2 4 LYS n 2 5 GLN n 2 6 ILE n 2 7 GLU n 2 8 ASP n 2 9 LYS n 2 10 ILE n 2 11 GLU n 2 12 GLU n 2 13 ILE n 2 14 GLU n 2 15 SER n 2 16 LYS n 2 17 GLN n 2 18 LYS n 2 19 LYS n 2 20 ILE n 2 21 GLU n 2 22 ASN n 2 23 GLU n 2 24 ILE n 2 25 ALA n 2 26 ARG n 2 27 ILE n 2 28 LYS n 2 29 LYS n 2 30 LEU n 2 31 LEU n 2 32 GLN n 2 33 LEU n 2 34 THR n 2 35 VAL n 2 36 TRP n 2 37 GLY n 2 38 ILE n 2 39 LYS n 2 40 GLN n 2 41 LEU n 2 42 ARG n 2 43 ALA n 2 44 ARG n 2 45 ILE n 2 46 LEU n 2 47 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 18 'synthetic construct' ? 32630 ? 2 1 sample 1 29 'Saccharomyces cerevisiae' ? 4932 ? 2 2 sample 30 47 'Human immunodeficiency virus type 1' ? 11676 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6PSA 6PSA ? 1 ? 1 2 UNP GCN4_YEAST P03069 ? 2 RMKQLEDKVEELLSKNYHLENEVARLKK 249 3 UNP ENV_HV1H2 P04578 ? 2 LLQLTVWGIKQLQARIL 565 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6PSA H 1 ? 18 ? 6PSA 0 ? 17 ? 0 17 2 2 6PSA A 2 ? 29 ? P03069 249 ? 276 ? 1 28 3 3 6PSA A 30 ? 46 ? P04578 565 ? 581 ? 29 45 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 6PSA ACE A 1 ? UNP P03069 ? ? acetylation 0 1 2 6PSA ILE A 6 ? UNP P03069 LEU 253 conflict 5 2 2 6PSA ILE A 10 ? UNP P03069 VAL 257 conflict 9 3 2 6PSA ILE A 13 ? UNP P03069 LEU 260 conflict 12 4 2 6PSA GLU A 14 ? UNP P03069 LEU 261 conflict 13 5 2 6PSA GLN A 17 ? UNP P03069 ASN 264 conflict 16 6 2 6PSA LYS A 18 ? UNP P03069 TYR 265 conflict 17 7 2 6PSA LYS A 19 ? UNP P03069 HIS 266 conflict 18 8 2 6PSA ILE A 20 ? UNP P03069 LEU 267 conflict 19 9 2 6PSA ILE A 24 ? UNP P03069 VAL 271 conflict 23 10 2 6PSA ILE A 27 ? UNP P03069 LEU 274 conflict 26 11 3 6PSA ARG A 42 ? UNP P04578 GLN 577 'engineered mutation' 41 12 3 6PSA NH2 A 47 ? UNP P04578 ? ? amidation 46 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DHI 'D-peptide linking' . D-HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PSA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details K _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'HAMPTON RESEARCH SALT RX SCREEN, CONDITION B4 - 1.8M AMMONIUM CITRATE DIBASIC, 0.1 M SODIUM ACETATE TRIHYDRATE, PH 4.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details K _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-11-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97591 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97591 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6PSA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.300 _reflns.number_obs 14574 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.07400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.10 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.37500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 7.10 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6PSA _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14513 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.970 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 13.21 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.217 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.020 _refine.ls_number_reflns_R_free 1454 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.18 _refine.aniso_B[1][1] 2.76980 _refine.aniso_B[2][2] 2.76980 _refine.aniso_B[3][3] -5.53960 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.56 _refine.solvent_model_param_bsol 66.47 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.13 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.290 _refine.pdbx_overall_phase_error 23.070 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 530 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 606 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 13.21 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 539 'X-RAY DIFFRACTION' ? f_angle_d 1.123 ? ? 713 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.871 ? ? 215 'X-RAY DIFFRACTION' ? f_chiral_restr 0.050 ? ? 76 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 88 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.3001 1.3465 1299 0.3117 99.00 0.3046 . . 161 . . . . 'X-RAY DIFFRACTION' . 1.3465 1.4004 1330 0.2292 99.00 0.2599 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.4004 1.4640 1300 0.1776 100.00 0.2384 . . 159 . . . . 'X-RAY DIFFRACTION' . 1.4640 1.5411 1294 0.1409 97.00 0.2261 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.5411 1.6375 1361 0.1488 100.00 0.1872 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.6375 1.7637 1334 0.1563 100.00 0.2127 . . 128 . . . . 'X-RAY DIFFRACTION' . 1.7637 1.9406 1322 0.1524 100.00 0.2278 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.9406 2.2203 1346 0.1545 100.00 0.1921 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.2203 2.7930 1328 0.1579 100.00 0.2216 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.7930 13.2070 1145 0.2040 86.00 0.2139 . . 127 . . . . # _struct.entry_id 6PSA _struct.title 'PIE12 D-PEPTIDE AGAINST HIV ENTRY (IN COMPLEX WITH IQN17 Q577R RESISTANCE MUTANT)' _struct.pdbx_descriptor 'PIE12 D-peptide, IQN17' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PSA _struct_keywords.text 'HIV, HELIX, HIV ENTRY INHIBITOR, IQN17 PIE12, D-PEPTIDE INHIBITOR, VIRAL PROTEIN-INHIBITOR complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 DHI A 4 ? DGL A 10 ? DHI H 3 DGL H 9 5 ? 7 HELX_P HELX_P2 AA2 DTR A 11 ? DGL A 16 ? DTR H 10 DGL H 15 1 ? 6 HELX_P HELX_P3 AA3 ARG B 2 ? LEU B 46 ? ARG A 1 LEU A 45 1 ? 45 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A DCY 6 SG ? ? ? 1_555 A DCY 15 SG ? ? H DCY 5 H DCY 14 1_555 ? ? ? ? ? ? ? 2.033 ? covale1 covale both ? A ACE 1 C ? ? ? 1_555 A DLY 2 N ? ? H ACE 0 H DLY 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale both ? A DLY 2 C ? ? ? 1_555 A GLY 3 N ? ? H DLY 1 H GLY 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? A GLY 3 C ? ? ? 1_555 A DHI 4 N ? ? H GLY 2 H DHI 3 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale both ? A DHI 4 C ? ? ? 1_555 A DPR 5 N ? ? H DHI 3 H DPR 4 1_555 ? ? ? ? ? ? ? 1.340 ? covale5 covale both ? A DPR 5 C ? ? ? 1_555 A DCY 6 N ? ? H DPR 4 H DCY 5 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale both ? A DCY 6 C ? ? ? 1_555 A DAS 7 N ? ? H DCY 5 H DAS 6 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale both ? A DAS 7 C ? ? ? 1_555 A DTY 8 N ? ? H DAS 6 H DTY 7 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale both ? A DTY 8 C ? ? ? 1_555 A DPR 9 N ? ? H DTY 7 H DPR 8 1_555 ? ? ? ? ? ? ? 1.336 ? covale9 covale both ? A DPR 9 C ? ? ? 1_555 A DGL 10 N ? ? H DPR 8 H DGL 9 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale both ? A DGL 10 C ? ? ? 1_555 A DTR 11 N ? ? H DGL 9 H DTR 10 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? A DTR 11 C ? ? ? 1_555 A DGN 12 N ? ? H DTR 10 H DGN 11 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale both ? A DGN 12 C ? ? ? 1_555 A DTR 13 N ? ? H DGN 11 H DTR 12 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale both ? A DTR 13 C ? ? ? 1_555 A DLE 14 N ? ? H DTR 12 H DLE 13 1_555 ? ? ? ? ? ? ? 1.333 ? covale14 covale both ? A DLE 14 C ? ? ? 1_555 A DCY 15 N ? ? H DLE 13 H DCY 14 1_555 ? ? ? ? ? ? ? 1.332 ? covale15 covale both ? A DCY 15 C ? ? ? 1_555 A DGL 16 N ? ? H DCY 14 H DGL 15 1_555 ? ? ? ? ? ? ? 1.331 ? covale16 covale both ? A DGL 16 C ? ? ? 1_555 A DLE 17 N ? ? H DGL 15 H DLE 16 1_555 ? ? ? ? ? ? ? 1.325 ? covale17 covale both ? A DLE 17 C ? ? ? 1_555 A NH2 18 N ? ? H DLE 16 H NH2 17 1_555 ? ? ? ? ? ? ? 1.324 ? covale18 covale both ? B ACE 1 C ? ? ? 1_555 B ARG 2 N ? ? A ACE 0 A ARG 1 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale both ? B ARG 2 C ? ? ? 1_555 B MSE 3 N ? ? A ARG 1 A MSE 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale20 covale both ? B MSE 3 C ? ? ? 1_555 B LYS 4 N ? ? A MSE 2 A LYS 3 1_555 ? ? ? ? ? ? ? 1.330 ? covale21 covale both ? B LEU 46 C ? ? ? 1_555 B NH2 47 N ? ? A LEU 45 A NH2 46 1_555 ? ? ? ? ? ? ? 1.327 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 6 'binding site for residue CL A 101' AC2 Software A CL 102 ? 5 'binding site for residue CL A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LEU B 31 ? LEU A 30 . ? 1_555 ? 2 AC1 6 LEU B 31 ? LEU A 30 . ? 3_555 ? 3 AC1 6 LEU B 31 ? LEU A 30 . ? 2_555 ? 4 AC1 6 THR B 34 ? THR A 33 . ? 2_555 ? 5 AC1 6 THR B 34 ? THR A 33 . ? 1_555 ? 6 AC1 6 THR B 34 ? THR A 33 . ? 3_555 ? 7 AC2 5 GLN B 17 ? GLN A 16 . ? 2_555 ? 8 AC2 5 GLN B 17 ? GLN A 16 . ? 1_555 ? 9 AC2 5 ILE B 20 ? ILE A 19 . ? 1_555 ? 10 AC2 5 HOH F . ? HOH A 203 . ? 2_555 ? 11 AC2 5 HOH F . ? HOH A 203 . ? 1_555 ? # _atom_sites.entry_id 6PSA _atom_sites.fract_transf_matrix[1][1] 0.020474 _atom_sites.fract_transf_matrix[1][2] 0.011821 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023641 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014785 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE H . n A 1 2 DLY 2 1 1 DLY DLY H . n A 1 3 GLY 3 2 2 GLY GLY H . n A 1 4 DHI 4 3 3 DHI DHI H . n A 1 5 DPR 5 4 4 DPR DPR H . n A 1 6 DCY 6 5 5 DCY DCY H . n A 1 7 DAS 7 6 6 DAS DAS H . n A 1 8 DTY 8 7 7 DTY DTY H . n A 1 9 DPR 9 8 8 DPR DPR H . n A 1 10 DGL 10 9 9 DGL DGL H . n A 1 11 DTR 11 10 10 DTR DTR H . n A 1 12 DGN 12 11 11 DGN DGN H . n A 1 13 DTR 13 12 12 DTR DTR H . n A 1 14 DLE 14 13 13 DLE DLE H . n A 1 15 DCY 15 14 14 DCY DCY H . n A 1 16 DGL 16 15 15 DGL DGL H . n A 1 17 DLE 17 16 16 DLE DLE H . n A 1 18 NH2 18 17 17 NH2 NH2 H . n B 2 1 ACE 1 0 0 ACE ACE A . n B 2 2 ARG 2 1 1 ARG ARG A . n B 2 3 MSE 3 2 2 MSE MSE A . n B 2 4 LYS 4 3 3 LYS LYS A . n B 2 5 GLN 5 4 4 GLN GLN A . n B 2 6 ILE 6 5 5 ILE ILE A . n B 2 7 GLU 7 6 6 GLU GLU A . n B 2 8 ASP 8 7 7 ASP ASP A . n B 2 9 LYS 9 8 8 LYS LYS A . n B 2 10 ILE 10 9 9 ILE ILE A . n B 2 11 GLU 11 10 10 GLU GLU A . n B 2 12 GLU 12 11 11 GLU GLU A . n B 2 13 ILE 13 12 12 ILE ILE A . n B 2 14 GLU 14 13 13 GLU GLU A . n B 2 15 SER 15 14 14 SER SER A . n B 2 16 LYS 16 15 15 LYS LYS A . n B 2 17 GLN 17 16 16 GLN GLN A . n B 2 18 LYS 18 17 17 LYS LYS A . n B 2 19 LYS 19 18 18 LYS LYS A . n B 2 20 ILE 20 19 19 ILE ILE A . n B 2 21 GLU 21 20 20 GLU GLU A . n B 2 22 ASN 22 21 21 ASN ASN A . n B 2 23 GLU 23 22 22 GLU GLU A . n B 2 24 ILE 24 23 23 ILE ILE A . n B 2 25 ALA 25 24 24 ALA ALA A . n B 2 26 ARG 26 25 25 ARG ARG A . n B 2 27 ILE 27 26 26 ILE ILE A . n B 2 28 LYS 28 27 27 LYS LYS A . n B 2 29 LYS 29 28 28 LYS LYS A . n B 2 30 LEU 30 29 29 LEU LEU A . n B 2 31 LEU 31 30 30 LEU LEU A . n B 2 32 GLN 32 31 31 GLN GLN A . n B 2 33 LEU 33 32 32 LEU LEU A . n B 2 34 THR 34 33 33 THR THR A . n B 2 35 VAL 35 34 34 VAL VAL A . n B 2 36 TRP 36 35 35 TRP TRP A . n B 2 37 GLY 37 36 36 GLY GLY A . n B 2 38 ILE 38 37 37 ILE ILE A . n B 2 39 LYS 39 38 38 LYS LYS A . n B 2 40 GLN 40 39 39 GLN GLN A . n B 2 41 LEU 41 40 40 LEU LEU A . n B 2 42 ARG 42 41 41 ARG ARG A . n B 2 43 ALA 43 42 42 ALA ALA A . n B 2 44 ARG 44 43 43 ARG ARG A . n B 2 45 ILE 45 44 44 ILE ILE A . n B 2 46 LEU 46 45 45 LEU LEU A . n B 2 47 NH2 47 46 46 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 101 104 CL CL A . D 3 CL 1 102 105 CL CL A . E 4 HOH 1 201 201 HOH HOH H . E 4 HOH 2 202 202 HOH HOH H . E 4 HOH 3 203 203 HOH HOH H . E 4 HOH 4 204 204 HOH HOH H . E 4 HOH 5 205 205 HOH HOH H . E 4 HOH 6 206 206 HOH HOH H . E 4 HOH 7 207 217 HOH HOH H . E 4 HOH 8 208 207 HOH HOH H . E 4 HOH 9 209 208 HOH HOH H . E 4 HOH 10 210 209 HOH HOH H . E 4 HOH 11 211 210 HOH HOH H . E 4 HOH 12 212 211 HOH HOH H . E 4 HOH 13 213 212 HOH HOH H . E 4 HOH 14 214 213 HOH HOH H . E 4 HOH 15 215 214 HOH HOH H . E 4 HOH 16 216 215 HOH HOH H . E 4 HOH 17 217 216 HOH HOH H . E 4 HOH 18 218 217 HOH HOH H . E 4 HOH 19 219 218 HOH HOH H . E 4 HOH 20 220 219 HOH HOH H . E 4 HOH 21 221 220 HOH HOH H . F 4 HOH 1 201 201 HOH HOH A . F 4 HOH 2 202 202 HOH HOH A . F 4 HOH 3 203 203 HOH HOH A . F 4 HOH 4 204 204 HOH HOH A . F 4 HOH 5 205 205 HOH HOH A . F 4 HOH 6 206 206 HOH HOH A . F 4 HOH 7 207 207 HOH HOH A . F 4 HOH 8 208 208 HOH HOH A . F 4 HOH 9 209 209 HOH HOH A . F 4 HOH 10 210 210 HOH HOH A . F 4 HOH 11 211 211 HOH HOH A . F 4 HOH 12 212 212 HOH HOH A . F 4 HOH 13 213 213 HOH HOH A . F 4 HOH 14 214 214 HOH HOH A . F 4 HOH 15 215 215 HOH HOH A . F 4 HOH 16 216 216 HOH HOH A . F 4 HOH 17 217 218 HOH HOH A . F 4 HOH 18 218 219 HOH HOH A . F 4 HOH 19 219 220 HOH HOH A . F 4 HOH 20 220 221 HOH HOH A . F 4 HOH 21 221 222 HOH HOH A . F 4 HOH 22 222 223 HOH HOH A . F 4 HOH 23 223 224 HOH HOH A . F 4 HOH 24 224 225 HOH HOH A . F 4 HOH 25 225 226 HOH HOH A . F 4 HOH 26 226 227 HOH HOH A . F 4 HOH 27 227 228 HOH HOH A . F 4 HOH 28 228 229 HOH HOH A . F 4 HOH 29 229 230 HOH HOH A . F 4 HOH 30 230 231 HOH HOH A . F 4 HOH 31 231 232 HOH HOH A . F 4 HOH 32 232 233 HOH HOH A . F 4 HOH 33 233 234 HOH HOH A . F 4 HOH 34 234 235 HOH HOH A . F 4 HOH 35 235 236 HOH HOH A . F 4 HOH 36 236 237 HOH HOH A . F 4 HOH 37 237 238 HOH HOH A . F 4 HOH 38 238 239 HOH HOH A . F 4 HOH 39 239 240 HOH HOH A . F 4 HOH 40 240 241 HOH HOH A . F 4 HOH 41 241 242 HOH HOH A . F 4 HOH 42 242 243 HOH HOH A . F 4 HOH 43 243 244 HOH HOH A . F 4 HOH 44 244 245 HOH HOH A . F 4 HOH 45 245 246 HOH HOH A . F 4 HOH 46 246 247 HOH HOH A . F 4 HOH 47 247 248 HOH HOH A . F 4 HOH 48 248 249 HOH HOH A . F 4 HOH 49 249 250 HOH HOH A . F 4 HOH 50 250 251 HOH HOH A . F 4 HOH 51 251 252 HOH HOH A . F 4 HOH 52 252 253 HOH HOH A . F 4 HOH 53 253 254 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10350 ? 1 MORE -83 ? 1 'SSA (A^2)' 11340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.7.1_743 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6PSA _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 4 ? ? O A HOH 201 ? ? 1.92 2 1 O H HOH 201 ? ? O H HOH 218 ? ? 2.01 3 1 O H HOH 211 ? ? O H HOH 220 ? ? 2.11 4 1 O A HOH 207 ? ? O A HOH 247 ? ? 2.12 5 1 O A HOH 215 ? ? O A HOH 242 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O H HOH 221 ? ? 1_555 O A HOH 248 ? ? 6_555 1.82 2 1 O H HOH 217 ? ? 1_555 O A HOH 243 ? ? 6_555 1.92 3 1 O A HOH 203 ? ? 1_555 O A HOH 203 ? ? 3_555 2.04 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ACE _pdbx_validate_rmsd_angle.auth_seq_id_1 0 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ACE _pdbx_validate_rmsd_angle.auth_seq_id_2 0 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.71 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -11.99 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 253 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.12 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system trigonal _space_group.name_H-M_alt 'R 3 :H' _space_group.IT_number 146 _space_group.name_Hall 'R 3' _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 #