HEADER METAL BINDING PROTEIN/RNA 01-AUG-19 6PZQ TITLE STRUCTURE OF THE HUMAN RESPIRATORY SYNCYTIAL VIRUS M2-1 PROTEIN IN TITLE 2 COMPLEX WITH A SHORT POSITIVE-SENSE GENE-END RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX M2-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ENVELOPE-ASSOCIATED 22 KDA PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*GP*UP*UP*AP*AP*U)-3'); COMPND 8 CHAIN: I, J; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN SOURCE 3 A2); SOURCE 4 ORGANISM_TAXID: 11259; SOURCE 5 STRAIN: A2; SOURCE 6 GENE: M2-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2; SOURCE 12 ORGANISM_TAXID: 11259 KEYWDS HRSV M2-1 RNA COMPLEX, RNA BINDING PROTEIN, METAL BINDING PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.GAO,D.CAO,B.LIANG REVDAT 3 11-OCT-23 6PZQ 1 REMARK REVDAT 2 16-SEP-20 6PZQ 1 JRNL REVDAT 1 05-AUG-20 6PZQ 0 JRNL AUTH Y.GAO,D.CAO,S.PAWNIKAR,K.P.JOHN,H.M.AHN,S.HILL,J.M.HA, JRNL AUTH 2 P.PARIKH,C.OGILVIE,A.SWAIN,A.YANG,A.BELL,A.SALAZAR,Y.MIAO, JRNL AUTH 3 B.LIANG JRNL TITL STRUCTURE OF THE HUMAN RESPIRATORY SYNCYTIAL VIRUS M2-1 JRNL TITL 2 PROTEIN IN COMPLEX WITH A SHORT POSITIVE-SENSE GENE-END RNA. JRNL REF STRUCTURE V. 28 979 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32697936 JRNL DOI 10.1016/J.STR.2020.07.001 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.5170 - 5.6214 0.99 2882 150 0.2230 0.2642 REMARK 3 2 5.6214 - 4.4622 0.99 2740 145 0.2023 0.2713 REMARK 3 3 4.4622 - 3.8983 1.00 2723 144 0.1904 0.2294 REMARK 3 4 3.8983 - 3.5419 1.00 2681 141 0.2242 0.3060 REMARK 3 5 3.5419 - 3.2880 1.00 2686 141 0.2697 0.3944 REMARK 3 6 3.2880 - 3.0942 1.00 2657 140 0.2676 0.3375 REMARK 3 7 3.0942 - 2.9392 1.00 2654 140 0.2741 0.3925 REMARK 3 8 2.9392 - 2.8113 1.00 2652 139 0.2885 0.3645 REMARK 3 9 2.8113 - 2.7030 1.00 2637 139 0.3054 0.3897 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 5422 REMARK 3 ANGLE : 1.470 7348 REMARK 3 CHIRALITY : 0.071 850 REMARK 3 PLANARITY : 0.009 884 REMARK 3 DIHEDRAL : 18.098 3335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.703 REMARK 200 RESOLUTION RANGE LOW (A) : 94.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 24.30 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS PH 8.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.90750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.72250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.90750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 149.72250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 52 REMARK 465 SER A 53 REMARK 465 ILE A 54 REMARK 465 ASP A 55 REMARK 465 THR A 56 REMARK 465 LEU A 57 REMARK 465 SER A 58 REMARK 465 GLU A 59 REMARK 465 ILE A 60 REMARK 465 SER A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 ARG A 68 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 LYS A 177 REMARK 465 GLU A 178 REMARK 465 LEU A 179 REMARK 465 THR A 180 REMARK 465 VAL A 181 REMARK 465 SER A 182 REMARK 465 ASP A 183 REMARK 465 THR A 184 REMARK 465 ASN A 185 REMARK 465 ASP A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 LYS A 189 REMARK 465 ASN A 190 REMARK 465 ASN A 191 REMARK 465 ASP A 192 REMARK 465 THR A 193 REMARK 465 THR A 194 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 52 REMARK 465 SER B 53 REMARK 465 ILE B 54 REMARK 465 ASP B 55 REMARK 465 THR B 56 REMARK 465 LEU B 57 REMARK 465 SER B 58 REMARK 465 GLU B 59 REMARK 465 ILE B 60 REMARK 465 SER B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 LEU B 66 REMARK 465 ASP B 67 REMARK 465 ASN B 175 REMARK 465 PRO B 176 REMARK 465 LYS B 177 REMARK 465 GLU B 178 REMARK 465 LEU B 179 REMARK 465 THR B 180 REMARK 465 VAL B 181 REMARK 465 SER B 182 REMARK 465 ASP B 183 REMARK 465 THR B 184 REMARK 465 ASN B 185 REMARK 465 ASP B 186 REMARK 465 HIS B 187 REMARK 465 ALA B 188 REMARK 465 LYS B 189 REMARK 465 ASN B 190 REMARK 465 ASN B 191 REMARK 465 ASP B 192 REMARK 465 THR B 193 REMARK 465 THR B 194 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ARG C 3 REMARK 465 LYS C 52 REMARK 465 SER C 53 REMARK 465 ILE C 54 REMARK 465 ASP C 55 REMARK 465 THR C 56 REMARK 465 LEU C 57 REMARK 465 SER C 58 REMARK 465 GLU C 59 REMARK 465 ILE C 60 REMARK 465 SER C 61 REMARK 465 GLY C 62 REMARK 465 ALA C 63 REMARK 465 ALA C 64 REMARK 465 GLU C 65 REMARK 465 LEU C 66 REMARK 465 ASP C 67 REMARK 465 ARG C 68 REMARK 465 THR C 69 REMARK 465 GLU C 70 REMARK 465 ASN C 175 REMARK 465 PRO C 176 REMARK 465 LYS C 177 REMARK 465 GLU C 178 REMARK 465 LEU C 179 REMARK 465 THR C 180 REMARK 465 VAL C 181 REMARK 465 SER C 182 REMARK 465 ASP C 183 REMARK 465 THR C 184 REMARK 465 ASN C 185 REMARK 465 ASP C 186 REMARK 465 HIS C 187 REMARK 465 ALA C 188 REMARK 465 LYS C 189 REMARK 465 ASN C 190 REMARK 465 ASN C 191 REMARK 465 ASP C 192 REMARK 465 THR C 193 REMARK 465 THR C 194 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 3 REMARK 465 LYS D 52 REMARK 465 SER D 53 REMARK 465 ILE D 54 REMARK 465 ASP D 55 REMARK 465 THR D 56 REMARK 465 LEU D 57 REMARK 465 SER D 58 REMARK 465 GLU D 59 REMARK 465 ILE D 60 REMARK 465 SER D 61 REMARK 465 GLY D 62 REMARK 465 ALA D 63 REMARK 465 ALA D 64 REMARK 465 GLU D 65 REMARK 465 LEU D 66 REMARK 465 ASP D 67 REMARK 465 PRO D 176 REMARK 465 LYS D 177 REMARK 465 GLU D 178 REMARK 465 LEU D 179 REMARK 465 THR D 180 REMARK 465 VAL D 181 REMARK 465 SER D 182 REMARK 465 ASP D 183 REMARK 465 THR D 184 REMARK 465 ASN D 185 REMARK 465 ASP D 186 REMARK 465 HIS D 187 REMARK 465 ALA D 188 REMARK 465 LYS D 189 REMARK 465 ASN D 190 REMARK 465 ASN D 191 REMARK 465 ASP D 192 REMARK 465 THR D 193 REMARK 465 THR D 194 REMARK 465 A I 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U I 3 OP1 OP2 REMARK 470 U J 4 OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS B 25 ZN ZN B 201 1.21 REMARK 500 HH22 ARG C 38 OD1 ASN D 44 1.57 REMARK 500 SG CYS B 15 ZN ZN B 201 1.64 REMARK 500 O LYS A 113 OD1 ASN A 117 1.95 REMARK 500 O LYS A 162 OD2 ASP A 166 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 15 CB CYS B 15 SG 0.102 REMARK 500 CYS C 15 CB CYS C 15 SG -0.114 REMARK 500 CYS C 21 CB CYS C 21 SG 0.125 REMARK 500 VAL D 37 CB VAL D 37 CG1 -0.142 REMARK 500 A I 6 N3 A I 6 C4 0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 7 CA - CB - SG ANGL. DEV. = 10.6 DEGREES REMARK 500 CYS B 15 CA - CB - SG ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG C 12 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 U I 3 C5' - C4' - O4' ANGL. DEV. = 6.1 DEGREES REMARK 500 A I 6 N9 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -7.61 -58.10 REMARK 500 HIS A 22 32.77 -99.99 REMARK 500 ILE A 125 -36.85 -135.20 REMARK 500 SER B 49 33.05 -91.94 REMARK 500 ASN C 89 64.76 39.50 REMARK 500 ASP C 116 34.26 -99.12 REMARK 500 ASN C 121 -2.39 66.20 REMARK 500 ASN C 141 98.11 -167.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 70 GLU B 71 149.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 308 DISTANCE = 7.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 15 SG 124.0 REMARK 620 3 CYS A 21 SG 94.8 123.6 REMARK 620 4 HIS A 25 NE2 95.7 121.2 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 21 SG REMARK 620 2 HIS B 25 NE2 107.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 7 SG REMARK 620 2 CYS C 15 SG 111.9 REMARK 620 3 CYS C 21 SG 95.4 122.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 7 SG REMARK 620 2 CYS D 15 SG 110.5 REMARK 620 3 CYS D 21 SG 98.5 118.8 REMARK 620 4 HIS D 25 NE2 106.7 115.0 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 DBREF 6PZQ A 1 194 UNP P04545 M21_HRSVA 1 194 DBREF 6PZQ B 1 194 UNP P04545 M21_HRSVA 1 194 DBREF 6PZQ C 1 194 UNP P04545 M21_HRSVA 1 194 DBREF 6PZQ D 1 194 UNP P04545 M21_HRSVA 1 194 DBREF 6PZQ I 1 7 PDB 6PZQ 6PZQ 1 7 DBREF 6PZQ J 1 7 PDB 6PZQ 6PZQ 1 7 SEQADV 6PZQ LEU A 179 UNP P04545 SER 179 CONFLICT SEQADV 6PZQ LEU B 179 UNP P04545 SER 179 CONFLICT SEQADV 6PZQ LEU C 179 UNP P04545 SER 179 CONFLICT SEQADV 6PZQ LEU D 179 UNP P04545 SER 179 CONFLICT SEQRES 1 A 194 MET SER ARG ARG ASN PRO CYS LYS PHE GLU ILE ARG GLY SEQRES 2 A 194 HIS CYS LEU ASN GLY LYS ARG CYS HIS PHE SER HIS ASN SEQRES 3 A 194 TYR PHE GLU TRP PRO PRO HIS ALA LEU LEU VAL ARG GLN SEQRES 4 A 194 ASN PHE MET LEU ASN ARG ILE LEU LYS SER MET ASP LYS SEQRES 5 A 194 SER ILE ASP THR LEU SER GLU ILE SER GLY ALA ALA GLU SEQRES 6 A 194 LEU ASP ARG THR GLU GLU TYR ALA LEU GLY VAL VAL GLY SEQRES 7 A 194 VAL LEU GLU SER TYR ILE GLY SER ILE ASN ASN ILE THR SEQRES 8 A 194 LYS GLN SER ALA CYS VAL ALA MET SER LYS LEU LEU THR SEQRES 9 A 194 GLU LEU ASN SER ASP ASP ILE LYS LYS LEU ARG ASP ASN SEQRES 10 A 194 GLU GLU LEU ASN SER PRO LYS ILE ARG VAL TYR ASN THR SEQRES 11 A 194 VAL ILE SER TYR ILE GLU SER ASN ARG LYS ASN ASN LYS SEQRES 12 A 194 GLN THR ILE HIS LEU LEU LYS ARG LEU PRO ALA ASP VAL SEQRES 13 A 194 LEU LYS LYS THR ILE LYS ASN THR LEU ASP ILE HIS LYS SEQRES 14 A 194 SER ILE THR ILE ASN ASN PRO LYS GLU LEU THR VAL SER SEQRES 15 A 194 ASP THR ASN ASP HIS ALA LYS ASN ASN ASP THR THR SEQRES 1 B 194 MET SER ARG ARG ASN PRO CYS LYS PHE GLU ILE ARG GLY SEQRES 2 B 194 HIS CYS LEU ASN GLY LYS ARG CYS HIS PHE SER HIS ASN SEQRES 3 B 194 TYR PHE GLU TRP PRO PRO HIS ALA LEU LEU VAL ARG GLN SEQRES 4 B 194 ASN PHE MET LEU ASN ARG ILE LEU LYS SER MET ASP LYS SEQRES 5 B 194 SER ILE ASP THR LEU SER GLU ILE SER GLY ALA ALA GLU SEQRES 6 B 194 LEU ASP ARG THR GLU GLU TYR ALA LEU GLY VAL VAL GLY SEQRES 7 B 194 VAL LEU GLU SER TYR ILE GLY SER ILE ASN ASN ILE THR SEQRES 8 B 194 LYS GLN SER ALA CYS VAL ALA MET SER LYS LEU LEU THR SEQRES 9 B 194 GLU LEU ASN SER ASP ASP ILE LYS LYS LEU ARG ASP ASN SEQRES 10 B 194 GLU GLU LEU ASN SER PRO LYS ILE ARG VAL TYR ASN THR SEQRES 11 B 194 VAL ILE SER TYR ILE GLU SER ASN ARG LYS ASN ASN LYS SEQRES 12 B 194 GLN THR ILE HIS LEU LEU LYS ARG LEU PRO ALA ASP VAL SEQRES 13 B 194 LEU LYS LYS THR ILE LYS ASN THR LEU ASP ILE HIS LYS SEQRES 14 B 194 SER ILE THR ILE ASN ASN PRO LYS GLU LEU THR VAL SER SEQRES 15 B 194 ASP THR ASN ASP HIS ALA LYS ASN ASN ASP THR THR SEQRES 1 C 194 MET SER ARG ARG ASN PRO CYS LYS PHE GLU ILE ARG GLY SEQRES 2 C 194 HIS CYS LEU ASN GLY LYS ARG CYS HIS PHE SER HIS ASN SEQRES 3 C 194 TYR PHE GLU TRP PRO PRO HIS ALA LEU LEU VAL ARG GLN SEQRES 4 C 194 ASN PHE MET LEU ASN ARG ILE LEU LYS SER MET ASP LYS SEQRES 5 C 194 SER ILE ASP THR LEU SER GLU ILE SER GLY ALA ALA GLU SEQRES 6 C 194 LEU ASP ARG THR GLU GLU TYR ALA LEU GLY VAL VAL GLY SEQRES 7 C 194 VAL LEU GLU SER TYR ILE GLY SER ILE ASN ASN ILE THR SEQRES 8 C 194 LYS GLN SER ALA CYS VAL ALA MET SER LYS LEU LEU THR SEQRES 9 C 194 GLU LEU ASN SER ASP ASP ILE LYS LYS LEU ARG ASP ASN SEQRES 10 C 194 GLU GLU LEU ASN SER PRO LYS ILE ARG VAL TYR ASN THR SEQRES 11 C 194 VAL ILE SER TYR ILE GLU SER ASN ARG LYS ASN ASN LYS SEQRES 12 C 194 GLN THR ILE HIS LEU LEU LYS ARG LEU PRO ALA ASP VAL SEQRES 13 C 194 LEU LYS LYS THR ILE LYS ASN THR LEU ASP ILE HIS LYS SEQRES 14 C 194 SER ILE THR ILE ASN ASN PRO LYS GLU LEU THR VAL SER SEQRES 15 C 194 ASP THR ASN ASP HIS ALA LYS ASN ASN ASP THR THR SEQRES 1 D 194 MET SER ARG ARG ASN PRO CYS LYS PHE GLU ILE ARG GLY SEQRES 2 D 194 HIS CYS LEU ASN GLY LYS ARG CYS HIS PHE SER HIS ASN SEQRES 3 D 194 TYR PHE GLU TRP PRO PRO HIS ALA LEU LEU VAL ARG GLN SEQRES 4 D 194 ASN PHE MET LEU ASN ARG ILE LEU LYS SER MET ASP LYS SEQRES 5 D 194 SER ILE ASP THR LEU SER GLU ILE SER GLY ALA ALA GLU SEQRES 6 D 194 LEU ASP ARG THR GLU GLU TYR ALA LEU GLY VAL VAL GLY SEQRES 7 D 194 VAL LEU GLU SER TYR ILE GLY SER ILE ASN ASN ILE THR SEQRES 8 D 194 LYS GLN SER ALA CYS VAL ALA MET SER LYS LEU LEU THR SEQRES 9 D 194 GLU LEU ASN SER ASP ASP ILE LYS LYS LEU ARG ASP ASN SEQRES 10 D 194 GLU GLU LEU ASN SER PRO LYS ILE ARG VAL TYR ASN THR SEQRES 11 D 194 VAL ILE SER TYR ILE GLU SER ASN ARG LYS ASN ASN LYS SEQRES 12 D 194 GLN THR ILE HIS LEU LEU LYS ARG LEU PRO ALA ASP VAL SEQRES 13 D 194 LEU LYS LYS THR ILE LYS ASN THR LEU ASP ILE HIS LYS SEQRES 14 D 194 SER ILE THR ILE ASN ASN PRO LYS GLU LEU THR VAL SER SEQRES 15 D 194 ASP THR ASN ASP HIS ALA LYS ASN ASN ASP THR THR SEQRES 1 I 7 A G U U A A U SEQRES 1 J 7 A G U U A A U HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HET ZN D 201 1 HETNAM ZN ZINC ION FORMUL 7 ZN 4(ZN 2+) FORMUL 11 HOH *14(H2 O) HELIX 1 AA1 CYS A 7 ARG A 12 1 6 HELIX 2 AA2 ASN A 26 TRP A 30 5 5 HELIX 3 AA3 PRO A 31 MET A 50 1 20 HELIX 4 AA4 GLU A 70 GLY A 75 1 6 HELIX 5 AA5 GLY A 75 GLY A 85 1 11 HELIX 6 AA6 THR A 91 THR A 104 1 14 HELIX 7 AA7 ASP A 110 ARG A 115 1 6 HELIX 8 AA8 ILE A 125 GLU A 136 1 12 HELIX 9 AA9 ASN A 141 ARG A 151 1 11 HELIX 10 AB1 PRO A 153 ASN A 174 1 22 HELIX 11 AB2 CYS B 7 ARG B 12 1 6 HELIX 12 AB3 ASN B 17 CYS B 21 5 5 HELIX 13 AB4 ASN B 26 TRP B 30 5 5 HELIX 14 AB5 PRO B 31 SER B 49 1 19 HELIX 15 AB6 LEU B 74 GLY B 85 1 12 HELIX 16 AB7 THR B 91 THR B 104 1 14 HELIX 17 AB8 ASN B 107 ASP B 116 1 10 HELIX 18 AB9 PRO B 123 ASN B 141 1 19 HELIX 19 AC1 ASN B 141 LEU B 152 1 12 HELIX 20 AC2 PRO B 153 ILE B 173 1 21 HELIX 21 AC3 CYS C 7 ARG C 12 1 6 HELIX 22 AC4 ASN C 17 CYS C 21 5 5 HELIX 23 AC5 ASN C 26 TRP C 30 5 5 HELIX 24 AC6 PRO C 31 SER C 49 1 19 HELIX 25 AC7 LEU C 74 ILE C 84 1 11 HELIX 26 AC8 THR C 91 GLU C 105 1 15 HELIX 27 AC9 ASN C 107 ASP C 116 1 10 HELIX 28 AD1 PRO C 123 ASN C 141 1 19 HELIX 29 AD2 ASN C 141 ARG C 151 1 11 HELIX 30 AD3 PRO C 153 ILE C 173 1 21 HELIX 31 AD4 CYS D 7 ARG D 12 1 6 HELIX 32 AD5 ASN D 17 CYS D 21 5 5 HELIX 33 AD6 ASN D 26 TRP D 30 5 5 HELIX 34 AD7 PRO D 31 SER D 49 1 19 HELIX 35 AD8 THR D 69 ALA D 73 5 5 HELIX 36 AD9 LEU D 74 GLY D 85 1 12 HELIX 37 AE1 THR D 91 THR D 104 1 14 HELIX 38 AE2 ASN D 107 GLU D 118 1 12 HELIX 39 AE3 PRO D 123 ASN D 141 1 19 HELIX 40 AE4 ASN D 141 LYS D 150 1 10 HELIX 41 AE5 PRO D 153 ASN D 174 1 22 SSBOND 1 CYS B 7 CYS B 15 1555 1555 2.54 LINK SG CYS A 7 ZN ZN A 201 1555 1555 2.15 LINK SG CYS A 15 ZN ZN A 201 1555 1555 2.26 LINK SG CYS A 21 ZN ZN A 201 1555 1555 2.60 LINK NE2 HIS A 25 ZN ZN A 201 1555 1555 2.11 LINK SG CYS B 21 ZN ZN B 201 1555 1555 1.97 LINK NE2 HIS B 25 ZN ZN B 201 1555 1555 2.05 LINK SG CYS C 7 ZN ZN C 201 1555 1555 2.46 LINK SG CYS C 15 ZN ZN C 201 1555 1555 2.16 LINK SG CYS C 21 ZN ZN C 201 1555 1555 2.48 LINK SG CYS D 7 ZN ZN D 201 1555 1555 2.16 LINK SG CYS D 15 ZN ZN D 201 1555 1555 2.17 LINK SG CYS D 21 ZN ZN D 201 1555 1555 2.44 LINK NE2 HIS D 25 ZN ZN D 201 1555 1555 2.08 SITE 1 AC1 4 CYS A 7 CYS A 15 CYS A 21 HIS A 25 SITE 1 AC2 4 CYS B 7 CYS B 15 CYS B 21 HIS B 25 SITE 1 AC3 4 CYS C 7 CYS C 15 CYS C 21 HIS C 25 SITE 1 AC4 4 CYS D 7 CYS D 15 CYS D 21 HIS D 25 CRYST1 94.750 94.750 199.630 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005009 0.00000