HEADER ANTIBIOTIC 14-DEC-18 6Q87 TITLE STRUCTURE OF FUCOSYLATED D-ANTIMICROBIAL PEPTIDE SB10 IN COMPLEX WITH TITLE 2 THE FUCOSE-BINDING LECTIN PA-IIL AT 2.541 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUCOSE-BINDING LECTIN II (PA-IIL),FUCOSE-BINDING LECTIN PA- COMPND 5 IIL; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FUCOSE-BINDING LECTIN PA-IIL LECTIN B FROM PSEUDOMONAS COMPND 8 AERUGINOSA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SB10; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, C0043_24310, C0044_25260, C0046_23510, CAZ10_21840, SOURCE 5 CW299_25270, DI492_13230, DT376_00595, SOURCE 6 PAERUG_E15_LONDON_28_01_14_00983, PAMH19_1713, RW109_RW109_02453; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS ANTIMICROBIAL, LECTIN, COMPLEX, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR S.BAERISWYL,A.STOCKER,J.-L.REYMOND REVDAT 4 24-JAN-24 6Q87 1 REMARK REVDAT 3 29-JUL-20 6Q87 1 REMARK LINK SITE REVDAT 2 01-MAY-19 6Q87 1 JRNL REVDAT 1 20-MAR-19 6Q87 0 JRNL AUTH S.BAERISWYL,B.H.GAN,T.N.SIRIWARDENA,R.VISINI,M.ROBADEY, JRNL AUTH 2 S.JAVOR,A.STOCKER,T.DARBRE,J.L.REYMOND JRNL TITL X-RAY CRYSTAL STRUCTURES OF SHORT ANTIMICROBIAL PEPTIDES AS JRNL TITL 2 PSEUDOMONAS AERUGINOSA LECTIN B COMPLEXES. JRNL REF ACS CHEM.BIOL. V. 14 758 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 30830745 JRNL DOI 10.1021/ACSCHEMBIO.9B00047 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4264 - 4.6167 1.00 2465 129 0.1925 0.2332 REMARK 3 2 4.6167 - 3.6649 0.99 2438 133 0.1940 0.2414 REMARK 3 3 3.6649 - 3.2018 1.00 2460 129 0.2099 0.2810 REMARK 3 4 3.2018 - 2.9091 1.00 2444 127 0.2479 0.2876 REMARK 3 5 2.9091 - 2.7006 0.99 2453 127 0.2577 0.2648 REMARK 3 6 2.7006 - 2.5414 0.98 2396 128 0.3353 0.3778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 943 REMARK 3 ANGLE : 0.923 1290 REMARK 3 CHIRALITY : 0.054 165 REMARK 3 PLANARITY : 0.004 168 REMARK 3 DIHEDRAL : 6.337 520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6491 56.3918 51.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.5649 T22: 0.9150 REMARK 3 T33: 0.4422 T12: -0.2503 REMARK 3 T13: -0.0978 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 3.6909 L22: 2.6307 REMARK 3 L33: 1.9178 L12: -0.5281 REMARK 3 L13: -0.5954 L23: 0.9231 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: 0.6564 S13: 0.0845 REMARK 3 S21: 0.0793 S22: -0.0557 S23: -0.3332 REMARK 3 S31: 0.1537 S32: 0.7833 S33: 0.0259 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4465 52.4050 48.0543 REMARK 3 T TENSOR REMARK 3 T11: 0.5832 T22: 1.2845 REMARK 3 T33: 0.5543 T12: 0.0078 REMARK 3 T13: -0.0995 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.7193 L22: 5.3684 REMARK 3 L33: 6.6094 L12: 0.4642 REMARK 3 L13: -3.3709 L23: -1.0606 REMARK 3 S TENSOR REMARK 3 S11: 0.1186 S12: 0.2440 S13: 0.0716 REMARK 3 S21: -0.1834 S22: 0.5796 S23: -0.4188 REMARK 3 S31: 0.7342 S32: 0.3523 S33: -0.8449 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6118 56.2733 49.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 1.1811 REMARK 3 T33: 0.5008 T12: 0.1470 REMARK 3 T13: -0.0888 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 2.5864 L22: 5.9643 REMARK 3 L33: 6.6240 L12: 0.5677 REMARK 3 L13: -2.4559 L23: -0.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.3376 S12: -0.6989 S13: -0.1119 REMARK 3 S21: 0.0173 S22: 1.1395 S23: -0.4673 REMARK 3 S31: 0.3290 S32: 0.7672 S33: -0.9169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9203 57.1617 52.2274 REMARK 3 T TENSOR REMARK 3 T11: 0.4952 T22: 0.9989 REMARK 3 T33: 0.5083 T12: -0.1400 REMARK 3 T13: 0.0105 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.9683 L22: 2.1668 REMARK 3 L33: 3.4988 L12: -0.5683 REMARK 3 L13: 0.5312 L23: -1.7554 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: 0.7380 S13: -0.1572 REMARK 3 S21: 0.0364 S22: 0.0267 S23: -0.3419 REMARK 3 S31: -0.1535 S32: 0.6123 S33: -0.0128 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3478 54.7382 54.8992 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.8423 REMARK 3 T33: 0.3726 T12: -0.1469 REMARK 3 T13: -0.0089 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 6.4173 L22: 4.0814 REMARK 3 L33: 2.7143 L12: -3.1723 REMARK 3 L13: 0.7678 L23: 0.8346 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.8385 S13: 0.2298 REMARK 3 S21: 0.3721 S22: 0.0696 S23: -0.2669 REMARK 3 S31: -0.0371 S32: 0.5641 S33: -0.1777 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9429 55.4397 58.9728 REMARK 3 T TENSOR REMARK 3 T11: 0.4136 T22: 0.6634 REMARK 3 T33: 0.4476 T12: -0.1593 REMARK 3 T13: -0.0766 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.5931 L22: 2.9498 REMARK 3 L33: 2.0664 L12: 0.2505 REMARK 3 L13: -1.1887 L23: 1.5497 REMARK 3 S TENSOR REMARK 3 S11: -0.1873 S12: 0.2361 S13: -0.1156 REMARK 3 S21: 0.5630 S22: 0.0637 S23: -0.6125 REMARK 3 S31: -0.3427 S32: 0.2632 S33: -0.0209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000031 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 45.419 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.990 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 1OXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% V/V TACSIMATE PH 7.0, 0.1 M HEPES REMARK 280 PH 7.0 ,10% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.08200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.54100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.08200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.54100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.08200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 16.54100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.08200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.54100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 DLY B 8 CG CD CE NZ REMARK 470 DLY B 11 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 94 O HOH A 401 2.13 REMARK 500 N DLE B 2 O7A ZDC B 1 2.15 REMARK 500 O ARG A 13 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 38.37 38.14 REMARK 500 GLU A 86 -40.88 -136.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 178.6 REMARK 620 3 ASN A 103 OD1 106.1 72.8 REMARK 620 4 ASP A 104 OD2 76.0 103.1 92.2 REMARK 620 5 GLY A 114 O 65.3 113.8 42.1 91.7 REMARK 620 6 ZDC B 1 O3 121.1 59.2 120.6 69.0 155.3 REMARK 620 7 ZDC B 1 O2 75.9 105.3 174.6 93.2 138.3 61.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 54.6 REMARK 620 3 ASP A 99 OD1 90.2 89.0 REMARK 620 4 ASP A 101 OD2 80.2 134.4 85.2 REMARK 620 5 ASP A 104 OD1 88.4 72.9 158.6 115.6 REMARK 620 6 ASP A 104 OD2 125.4 123.1 141.0 86.0 51.5 REMARK 620 7 ZDC B 1 O3 149.5 145.7 72.2 73.7 116.9 68.8 REMARK 620 8 ZDC B 1 O4 136.5 81.9 88.5 142.8 77.9 76.2 69.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q6W RELATED DB: PDB REMARK 900 6Q6W CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q6X RELATED DB: PDB REMARK 900 6Q6X CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q85 RELATED DB: PDB REMARK 900 6Q85 CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q77 RELATED DB: PDB REMARK 900 6Q77 CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q79 RELATED DB: PDB REMARK 900 6Q79 CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE REMARK 900 RELATED ID: 6Q86 RELATED DB: PDB REMARK 900 6Q86 CONTAINS THE SAME PROTEIN COMPLEXED WITH A CLOSE DERIVATIVE OF REMARK 900 THE FUCOSYLATED D-ANTIMICROBIAL PEPTIDE DBREF1 6Q87 A 1 114 UNP A0A069Q9V4_PSEAI DBREF2 6Q87 A A0A069Q9V4 2 115 DBREF 6Q87 B 2 14 PDB 6Q87 6Q87 2 14 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 13 DLE DLE DLY DAL DLE DLY DLY DLE DAL DLY DLY DTY DLY HET DLE B 2 8 HET DLE B 3 8 HET DLY B 4 9 HET DAL B 5 5 HET DLE B 6 8 HET DLY B 7 9 HET DLY B 8 5 HET DLE B 9 8 HET DAL B 10 5 HET DLY B 11 5 HET DLY B 12 9 HET DTY B 13 12 HET DLY B 14 9 HET CA A 301 1 HET CA A 302 1 HET ZDC B 1 13 HET NH2 B 202 1 HETNAM DLE D-LEUCINE HETNAM DLY D-LYSINE HETNAM DAL D-ALANINE HETNAM DTY D-TYROSINE HETNAM CA CALCIUM ION HETNAM ZDC 3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC ACID HETNAM NH2 AMINO GROUP FORMUL 2 DLE 4(C6 H13 N O2) FORMUL 2 DLY 6(C6 H14 N2 O2) FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 2 DTY C9 H11 N O3 FORMUL 3 CA 2(CA 2+) FORMUL 5 ZDC C8 H14 O6 FORMUL 6 NH2 H2 N FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 DLE B 3 DLY B 14 1 12 SHEET 1 AA1 4 VAL A 5 THR A 7 0 SHEET 2 AA1 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA1 4 GLN A 26 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 AA1 4 GLU A 35 GLY A 42 -1 O ALA A 37 N VAL A 30 SHEET 1 AA2 3 VAL A 5 THR A 7 0 SHEET 2 AA2 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA2 3 ARG A 72 PRO A 73 -1 O ARG A 72 N VAL A 69 SHEET 1 AA3 5 ALA A 48 ASN A 56 0 SHEET 2 AA3 5 ARG A 13 ALA A 20 -1 N PHE A 14 O LEU A 55 SHEET 3 AA3 5 ALA A 105 TRP A 111 -1 O VAL A 108 N THR A 17 SHEET 4 AA3 5 LEU A 87 GLU A 95 -1 N ALA A 90 O ILE A 109 SHEET 5 AA3 5 ASP A 75 LEU A 83 -1 N VAL A 77 O GLY A 93 LINK C7 ZDC B 1 N DLE B 2 1555 1555 1.21 LINK C DLE B 2 N DLE B 3 1555 1555 1.33 LINK C DLE B 3 N DLY B 4 1555 1555 1.33 LINK C DLY B 4 N DAL B 5 1555 1555 1.33 LINK C DAL B 5 N DLE B 6 1555 1555 1.33 LINK C DLE B 6 N DLY B 7 1555 1555 1.33 LINK C DLY B 7 N DLY B 8 1555 1555 1.33 LINK C DLY B 8 N DLE B 9 1555 1555 1.33 LINK C DLE B 9 N DAL B 10 1555 1555 1.33 LINK C DAL B 10 N DLY B 11 1555 1555 1.33 LINK C DLY B 11 N DLY B 12 1555 1555 1.33 LINK C DLY B 12 N DTY B 13 1555 1555 1.33 LINK C DTY B 13 N DLY B 14 1555 1555 1.33 LINK C DLY B 14 N NH2 B 202 1555 1555 1.33 LINK O ASN A 21 CA CA A 302 1555 1555 2.40 LINK OE1 GLU A 95 CA CA A 301 1555 1555 2.32 LINK OE2 GLU A 95 CA CA A 301 1555 1555 2.47 LINK OD1 ASP A 99 CA CA A 301 1555 1555 2.38 LINK OD2 ASP A 101 CA CA A 301 1555 1555 2.23 LINK OD1 ASP A 101 CA CA A 302 1555 1555 2.40 LINK OD1 ASN A 103 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 104 CA CA A 301 1555 1555 2.48 LINK OD2 ASP A 104 CA CA A 301 1555 1555 2.58 LINK OD2 ASP A 104 CA CA A 302 1555 1555 2.61 LINK O GLY A 114 CA CA A 302 1555 12567 2.32 LINK CA CA A 301 O3 ZDC B 1 1555 1555 2.56 LINK CA CA A 301 O4 ZDC B 1 1555 1555 2.33 LINK CA CA A 302 O3 ZDC B 1 1555 1555 2.52 LINK CA CA A 302 O2 ZDC B 1 1555 1555 2.51 CISPEP 1 TRP A 111 PRO A 112 0 0.74 CRYST1 130.200 130.200 49.623 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007680 0.004434 0.000000 0.00000 SCALE2 0.000000 0.008869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020152 0.00000