data_6QN3 # _entry.id 6QN3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QN3 pdb_00006qn3 10.2210/pdb6qn3/pdb WWPDB D_1292100500 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-12 2 'Structure model' 1 1 2019-07-03 3 'Structure model' 1 2 2019-08-21 4 'Structure model' 1 3 2019-08-28 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_proc 4 3 'Structure model' diffrn_source 5 4 'Structure model' citation 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_struct_conn_angle 10 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 2 'Structure model' '_citation_author.name' 5 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 4 'Structure model' '_citation.journal_volume' 7 4 'Structure model' '_citation.page_first' 8 4 'Structure model' '_citation.page_last' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QN3 _pdbx_database_status.recvd_initial_deposition_date 2019-02-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Lilley, D.M.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 7666 _citation.page_last 7675 _citation.title 'Structure and ligand binding of the glutamine-II riboswitch.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz539 _citation.pdbx_database_id_PubMed 31216023 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Wang, J.' 2 ? primary 'Watkins, A.M.' 3 ? primary 'Das, R.' 4 ? primary 'Lilley, D.M.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (51-MER)' 16169.624 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 4 ? ? ? ? 4 non-polymer syn GLUTAMINE 146.144 2 ? ? ? ? 5 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGUUCACCCUUCGGGGCGCAUGAAAUGGGAGUAGGGAACGGGAUUCUCAU _entity_poly.pdbx_seq_one_letter_code_can CGUUCACCCUUCGGGGCGCAUGAAAUGGGAGUAGGGAACGGGAUUCUCAU _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'BROMIDE ION' BR 4 GLUTAMINE GLN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 U n 1 5 C n 1 6 A n 1 7 C n 1 8 C n 1 9 C n 1 10 U n 1 11 U n 1 12 C n 1 13 G n 1 14 G n 1 15 G n 1 16 G n 1 17 C n 1 18 G n 1 19 C n 1 20 A n 1 21 U n 1 22 G n 1 23 A n 1 24 A n 1 25 A n 1 26 U n 1 27 G n 1 28 G n 1 29 G n 1 30 A n 1 31 G n 1 32 U n 1 33 A n 1 34 G n 1 35 G n 1 36 G n 1 37 A n 1 38 A n 1 39 C n 1 40 G n 1 41 G n 1 42 G n 1 43 A n 1 44 U n 1 45 U n 1 46 C n 1 47 U n 1 48 C n 1 49 A n 1 50 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 50 _pdbx_entity_src_syn.organism_scientific 'Prochlorococcus sp.' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1220 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 A 43 43 43 A A A . n A 1 44 U 44 44 44 U U A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 U 50 50 50 U U A . n B 1 1 C 1 1 1 C C B . n B 1 2 G 2 2 2 G G B . n B 1 3 U 3 3 3 U U B . n B 1 4 U 4 4 4 U U B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 U 10 10 10 U U B . n B 1 11 U 11 11 11 U U B . n B 1 12 C 12 12 12 C C B . n B 1 13 G 13 13 13 G G B . n B 1 14 G 14 14 14 G G B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 C 17 17 17 C C B . n B 1 18 G 18 18 18 G G B . n B 1 19 C 19 19 19 C C B . n B 1 20 A 20 20 20 A A B . n B 1 21 U 21 21 21 U U B . n B 1 22 G 22 22 22 G G B . n B 1 23 A 23 23 23 A A B . n B 1 24 A 24 24 24 A A B . n B 1 25 A 25 25 25 A A B . n B 1 26 U 26 26 26 U U B . n B 1 27 G 27 27 27 G G B . n B 1 28 G 28 28 28 G G B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 G 31 31 31 G G B . n B 1 32 U 32 32 32 U U B . n B 1 33 A 33 33 33 A A B . n B 1 34 G 34 34 34 G G B . n B 1 35 G 35 35 35 G G B . n B 1 36 G 36 36 36 G G B . n B 1 37 A 37 37 37 A A B . n B 1 38 A 38 38 38 A A B . n B 1 39 C 39 39 39 C C B . n B 1 40 G 40 40 40 G G B . n B 1 41 G 41 41 41 G G B . n B 1 42 G 42 42 42 G G B . n B 1 43 A 43 43 43 A A B . n B 1 44 U 44 44 44 U U B . n B 1 45 U 45 45 45 U U B . n B 1 46 C 46 46 46 C C B . n B 1 47 U 47 47 47 U U B . n B 1 48 C 48 48 48 C C B . n B 1 49 A 49 49 49 A A B . n B 1 50 U 50 50 50 U U B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 401 MG MG A . D 3 BR 1 102 2 BR BR A . E 3 BR 1 103 4 BR BR A . F 2 MG 1 104 301 MG MG A . G 4 GLN 1 105 101 GLN GLN A . H 2 MG 1 201 201 MG MG B . I 2 MG 1 202 201 MG MG B . J 3 BR 1 203 1 BR BR B . K 3 BR 1 204 3 BR BR B . L 4 GLN 1 205 101 GLN GLN B . M 5 HOH 1 301 15 HOH HOH A . M 5 HOH 2 302 7 HOH HOH A . M 5 HOH 3 303 24 HOH HOH A . M 5 HOH 4 304 13 HOH HOH A . M 5 HOH 5 305 9 HOH HOH A . M 5 HOH 6 306 28 HOH HOH A . M 5 HOH 7 307 29 HOH HOH A . N 5 HOH 1 401 26 HOH HOH B . N 5 HOH 2 402 10 HOH HOH B . N 5 HOH 3 403 6 HOH HOH B . N 5 HOH 4 404 5 HOH HOH B . N 5 HOH 5 405 11 HOH HOH B . N 5 HOH 6 406 25 HOH HOH B . N 5 HOH 7 407 27 HOH HOH B . N 5 HOH 8 408 16 HOH HOH B . N 5 HOH 9 409 22 HOH HOH B . N 5 HOH 10 410 18 HOH HOH B . N 5 HOH 11 411 17 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6QN3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 76.502 _cell.length_a_esd ? _cell.length_b 115.725 _cell.length_b_esd ? _cell.length_c 80.582 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QN3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Magnesium Acetate tetrahydrate 0.1 M Sodium Cacodylate pH 6.0 19% Polyethylene Glycol 8000 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-01-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9195 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9195 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6QN3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 80.58 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36523 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.0 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.4 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.044 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.24 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 938 _reflns_shell.percent_possible_all 99.58 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.639 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.762 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.762 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6QN3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 47.001 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 30523 _refine.ls_number_reflns_R_free 1566 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.39 _refine.ls_percent_reflns_R_free 5.13 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2451 _refine.ls_R_factor_R_free 0.2944 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2424 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 41.51 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.45 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2160 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 2186 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 47.001 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 2412 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.513 ? 3754 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.097 ? 1200 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.072 ? 500 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 104 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3000 2.3742 . . 151 2646 100.00 . . . 0.4224 . 0.4061 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3742 2.4591 . . 145 2596 100.00 . . . 0.4638 . 0.4131 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4591 2.5576 . . 122 2662 99.00 . . . 0.4066 . 0.4159 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5576 2.6739 . . 146 2656 100.00 . . . 0.4122 . 0.3993 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6739 2.8149 . . 140 2609 99.00 . . . 0.5227 . 0.3966 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8149 2.9912 . . 154 2631 100.00 . . . 0.4581 . 0.3513 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9912 3.2221 . . 146 2605 98.00 . . . 0.3430 . 0.2876 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2221 3.5463 . . 134 2624 99.00 . . . 0.3473 . 0.2252 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5463 4.0592 . . 135 2648 99.00 . . . 0.2393 . 0.1800 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0592 5.1132 . . 130 2648 100.00 . . . 0.1741 . 0.1639 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.1132 47.0106 . . 163 2632 100.00 . . . 0.2096 . 0.1700 . . . . . . . . . . # _struct.entry_id 6QN3 _struct.title 'Structure of the Glutamine II Riboswitch' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QN3 _struct_keywords.text 'Glutamine II Riboswitch, stem-loop, tetra loop, dimer, RNA, gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? N N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6QN3 _struct_ref.pdbx_db_accession 6QN3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QN3 A 1 ? 50 ? 6QN3 1 ? 50 ? 1 50 2 1 6QN3 B 1 ? 50 ? 6QN3 1 ? 50 ? 1 50 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4500 ? 1 MORE -35 ? 1 'SSA (A^2)' 16630 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F MG . MG ? ? ? 1_555 L GLN . O ? ? A MG 104 B GLN 205 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc2 metalc ? ? G GLN . OXT ? ? ? 1_555 H MG . MG ? ? A GLN 105 B MG 201 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc3 metalc ? ? M HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 306 B MG 201 1_555 ? ? ? ? ? ? ? 1.927 ? ? metalc4 metalc ? ? M HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 307 B MG 201 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 201 B HOH 401 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc6 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 201 B HOH 406 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc7 metalc ? ? H MG . MG ? ? ? 1_555 N HOH . O ? ? B MG 201 B HOH 407 1_555 ? ? ? ? ? ? ? 2.104 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 40 N1 ? ? A C 1 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 40 O6 ? ? A C 1 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 40 N2 ? ? A C 1 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N7 ? ? ? 1_555 A G 18 N2 ? ? A G 2 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A G 18 N1 ? ? A G 2 A G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 39 N3 ? ? A G 2 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 39 O2 ? ? A G 2 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 39 N4 ? ? A G 2 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 38 N1 ? ? A U 3 B A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 38 N6 ? ? A U 3 B A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 37 N1 ? ? A U 4 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 37 N6 ? ? A U 4 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 36 N1 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 36 O6 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 36 N2 ? ? A C 5 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A C 17 O2 ? ? A A 6 A C 17 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 7 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 7 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 7 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 8 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 14 N1 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 14 O6 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 14 N2 ? ? A C 9 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 10 O2 ? ? ? 1_555 A G 13 N1 ? ? A U 10 A G 13 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 18 O6 ? ? ? 1_555 B A 38 N6 ? ? A G 18 B A 38 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 39 N4 ? ? A G 18 B C 39 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog29 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 41 N1 ? ? A C 19 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 41 O6 ? ? A C 19 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 41 N2 ? ? A C 19 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 50 N3 ? ? A A 25 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 50 O4 ? ? A A 25 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 26 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 26 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 26 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 26 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 27 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 27 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 27 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 28 N1 ? ? ? 1_555 A U 47 O2 ? ? A G 28 A U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A G 28 O6 ? ? ? 1_555 A U 47 N3 ? ? A G 28 A U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 29 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 29 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 29 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 30 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 30 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 31 N1 ? ? ? 1_555 A U 44 O2 ? ? A G 31 A U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A G 31 O6 ? ? ? 1_555 A U 44 N3 ? ? A G 31 A U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 32 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 32 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 33 N1 ? ? ? 1_555 A G 42 N1 ? ? A A 33 A G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A A 33 N6 ? ? ? 1_555 A G 42 O6 ? ? A A 33 A G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog52 hydrog ? ? A G 35 N1 ? ? ? 1_555 A A 37 N7 ? ? A G 35 A A 37 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog53 hydrog ? ? A G 35 O6 ? ? ? 1_555 A A 37 N6 ? ? A G 35 A A 37 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog54 hydrog ? ? A G 36 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 36 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 36 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 36 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 36 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 36 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 37 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 37 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 37 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 37 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 38 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 38 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 38 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 38 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 18 O6 ? ? A A 38 B G 18 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog62 hydrog ? ? A C 39 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 39 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 39 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 39 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 39 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 39 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 39 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 39 B G 18 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog66 hydrog ? ? A G 40 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 40 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 40 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 40 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 40 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 40 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 41 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 41 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 41 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 2 N7 ? ? ? 1_555 B G 18 N2 ? ? B G 2 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog73 hydrog ? ? B G 2 O6 ? ? ? 1_555 B G 18 N1 ? ? B G 2 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog74 hydrog ? ? B A 6 N6 ? ? ? 1_555 B C 17 O2 ? ? B A 6 B C 17 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog75 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 16 N1 ? ? B C 7 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 16 O6 ? ? B C 7 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 16 N2 ? ? B C 7 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 15 N1 ? ? B C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 15 O6 ? ? B C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 15 N2 ? ? B C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 14 N1 ? ? B C 9 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 14 O6 ? ? B C 9 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 14 N2 ? ? B C 9 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B U 10 O2 ? ? ? 1_555 B G 13 N1 ? ? B U 10 B G 13 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog85 hydrog ? ? B A 25 N1 ? ? ? 1_555 B U 50 N3 ? ? B A 25 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B A 25 N6 ? ? ? 1_555 B U 50 O4 ? ? B A 25 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 26 N3 ? ? ? 1_555 B A 49 N1 ? ? B U 26 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 26 O4 ? ? ? 1_555 B A 49 N6 ? ? B U 26 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 27 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 27 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 27 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 28 N1 ? ? ? 1_555 B U 47 O2 ? ? B G 28 B U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog93 hydrog ? ? B G 28 O6 ? ? ? 1_555 B U 47 N3 ? ? B G 28 B U 47 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog94 hydrog ? ? B G 29 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 29 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 29 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 29 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 29 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 29 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B A 30 N1 ? ? ? 1_555 B U 45 N3 ? ? B A 30 B U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B A 30 N6 ? ? ? 1_555 B U 45 O4 ? ? B A 30 B U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 31 N1 ? ? ? 1_555 B U 44 O2 ? ? B G 31 B U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? B G 31 O6 ? ? ? 1_555 B U 44 N3 ? ? B G 31 B U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog101 hydrog ? ? B U 32 N3 ? ? ? 1_555 B A 43 N1 ? ? B U 32 B A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B U 32 O4 ? ? ? 1_555 B A 43 N6 ? ? B U 32 B A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B A 33 N1 ? ? ? 1_555 B G 42 N1 ? ? B A 33 B G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog104 hydrog ? ? B A 33 N6 ? ? ? 1_555 B G 42 O6 ? ? B A 33 B G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog105 hydrog ? ? B G 35 N1 ? ? ? 1_555 B A 37 N7 ? ? B G 35 B A 37 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog106 hydrog ? ? B G 35 O6 ? ? ? 1_555 B A 37 N6 ? ? B G 35 B A 37 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OXT ? G GLN . ? A GLN 105 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? M HOH . ? A HOH 306 ? 1_555 92.4 ? 2 OXT ? G GLN . ? A GLN 105 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? M HOH . ? A HOH 307 ? 1_555 88.2 ? 3 O ? M HOH . ? A HOH 306 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? M HOH . ? A HOH 307 ? 1_555 178.2 ? 4 OXT ? G GLN . ? A GLN 105 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 401 ? 1_555 172.0 ? 5 O ? M HOH . ? A HOH 306 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 401 ? 1_555 95.6 ? 6 O ? M HOH . ? A HOH 307 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 401 ? 1_555 83.8 ? 7 OXT ? G GLN . ? A GLN 105 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 406 ? 1_555 85.1 ? 8 O ? M HOH . ? A HOH 306 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 406 ? 1_555 100.2 ? 9 O ? M HOH . ? A HOH 307 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 406 ? 1_555 78.1 ? 10 O ? N HOH . ? B HOH 401 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 406 ? 1_555 92.6 ? 11 OXT ? G GLN . ? A GLN 105 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 407 ? 1_555 92.0 ? 12 O ? M HOH . ? A HOH 306 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 407 ? 1_555 87.3 ? 13 O ? M HOH . ? A HOH 307 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 407 ? 1_555 94.4 ? 14 O ? N HOH . ? B HOH 401 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 407 ? 1_555 89.2 ? 15 O ? N HOH . ? B HOH 406 ? 1_555 MG ? H MG . ? B MG 201 ? 1_555 O ? N HOH . ? B HOH 407 ? 1_555 172.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BR 102 ? 2 'binding site for residue BR A 102' AC2 Software A BR 103 ? 2 'binding site for residue BR A 103' AC3 Software A MG 104 ? 1 'binding site for residue MG A 104' AC4 Software A GLN 105 ? 11 'binding site for residue GLN A 105' AC5 Software B MG 201 ? 6 'binding site for residue MG B 201' AC6 Software B GLN 205 ? 8 'binding site for residue GLN B 205' AC7 Software B BR 203 ? 4 'binding site for Di-nucleotide BR B 203 and C B 9' AC8 Software B BR 204 ? 6 'binding site for Di-nucleotide BR B 204 and C B 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 C A 8 ? C A 8 . ? 1_555 ? 2 AC1 2 C A 9 ? C A 9 . ? 1_555 ? 3 AC2 2 C A 7 ? C A 7 . ? 1_555 ? 4 AC2 2 C A 8 ? C A 8 . ? 1_555 ? 5 AC3 1 GLN L . ? GLN B 205 . ? 1_555 ? 6 AC4 11 C A 1 ? C A 1 . ? 1_555 ? 7 AC4 11 G A 18 ? G A 18 . ? 1_555 ? 8 AC4 11 C A 19 ? C A 19 . ? 1_555 ? 9 AC4 11 A A 20 ? A A 20 . ? 1_555 ? 10 AC4 11 G B 35 ? G B 35 . ? 1_555 ? 11 AC4 11 C B 39 ? C B 39 . ? 1_555 ? 12 AC4 11 G B 40 ? G B 40 . ? 1_555 ? 13 AC4 11 G B 41 ? G B 41 . ? 1_555 ? 14 AC4 11 MG H . ? MG B 201 . ? 1_555 ? 15 AC4 11 HOH N . ? HOH B 406 . ? 1_555 ? 16 AC4 11 HOH N . ? HOH B 407 . ? 1_555 ? 17 AC5 6 GLN G . ? GLN A 105 . ? 1_555 ? 18 AC5 6 HOH M . ? HOH A 306 . ? 1_555 ? 19 AC5 6 HOH M . ? HOH A 307 . ? 1_555 ? 20 AC5 6 HOH N . ? HOH B 401 . ? 1_555 ? 21 AC5 6 HOH N . ? HOH B 406 . ? 1_555 ? 22 AC5 6 HOH N . ? HOH B 407 . ? 1_555 ? 23 AC6 8 G A 35 ? G A 35 . ? 1_555 ? 24 AC6 8 C A 39 ? C A 39 . ? 1_555 ? 25 AC6 8 G A 40 ? G A 40 . ? 1_555 ? 26 AC6 8 G A 41 ? G A 41 . ? 1_555 ? 27 AC6 8 MG F . ? MG A 104 . ? 1_555 ? 28 AC6 8 C B 1 ? C B 1 . ? 1_555 ? 29 AC6 8 G B 18 ? G B 18 . ? 1_555 ? 30 AC6 8 C B 19 ? C B 19 . ? 1_555 ? 31 AC7 4 C B 8 ? C B 8 . ? 1_555 ? 32 AC7 4 U B 10 ? U B 10 . ? 1_555 ? 33 AC7 4 G B 14 ? G B 14 . ? 1_555 ? 34 AC7 4 G B 15 ? G B 15 . ? 1_555 ? 35 AC8 6 C B 7 ? C B 7 . ? 1_555 ? 36 AC8 6 C B 9 ? C B 9 . ? 1_555 ? 37 AC8 6 G B 15 ? G B 15 . ? 1_555 ? 38 AC8 6 G B 16 ? G B 16 . ? 1_555 ? 39 AC8 6 G B 31 ? G B 31 . ? 6_445 ? 40 AC8 6 BR J . ? BR B 203 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C5 B C 8 ? ? BR B BR 204 ? ? 1.93 2 1 C5 A C 9 ? ? BR A BR 102 ? ? 2.10 3 1 C5 A C 8 ? ? BR A BR 103 ? ? 2.14 4 1 C5 B C 9 ? ? BR B BR 203 ? ? 2.15 5 1 OP2 B A 37 ? ? O B HOH 401 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 113.84 108.50 5.34 0.70 N 2 1 C2 A G 29 ? ? N3 A G 29 ? ? C4 A G 29 ? ? 115.20 111.90 3.30 0.50 N 3 1 N3 A G 29 ? ? C4 A G 29 ? ? C5 A G 29 ? ? 125.33 128.60 -3.27 0.50 N 4 1 N3 A G 29 ? ? C4 A G 29 ? ? N9 A G 29 ? ? 129.87 126.00 3.87 0.60 N 5 1 "C3'" A A 33 ? ? "O3'" A A 33 ? ? P A G 34 ? ? 127.48 119.70 7.78 1.20 Y 6 1 "O4'" A G 34 ? ? "C1'" A G 34 ? ? N9 A G 34 ? ? 112.79 108.50 4.29 0.70 N 7 1 C5 A G 34 ? ? N7 A G 34 ? ? C8 A G 34 ? ? 100.37 104.30 -3.93 0.50 N 8 1 N7 A G 34 ? ? C8 A G 34 ? ? N9 A G 34 ? ? 116.55 113.10 3.45 0.50 N 9 1 "O4'" B C 1 ? ? "C1'" B C 1 ? ? N1 B C 1 ? ? 113.74 108.50 5.24 0.70 N 10 1 C6 B C 19 ? ? N1 B C 19 ? ? C2 B C 19 ? ? 117.16 120.30 -3.14 0.40 N 11 1 N7 B A 20 ? ? C8 B A 20 ? ? N9 B A 20 ? ? 117.58 113.80 3.78 0.50 N 12 1 C8 B A 20 ? ? N9 B A 20 ? ? C4 B A 20 ? ? 102.85 105.80 -2.95 0.40 N 13 1 N3 B U 21 ? ? C2 B U 21 ? ? O2 B U 21 ? ? 117.80 122.20 -4.40 0.70 N 14 1 C5 B U 21 ? ? C4 B U 21 ? ? O4 B U 21 ? ? 131.33 125.90 5.43 0.60 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 304 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BR BR BR N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 HOH O O N N 132 HOH H1 H N N 133 HOH H2 H N N 134 MG MG MG N N 135 U OP3 O N N 136 U P P N N 137 U OP1 O N N 138 U OP2 O N N 139 U "O5'" O N N 140 U "C5'" C N N 141 U "C4'" C N R 142 U "O4'" O N N 143 U "C3'" C N S 144 U "O3'" O N N 145 U "C2'" C N R 146 U "O2'" O N N 147 U "C1'" C N R 148 U N1 N N N 149 U C2 C N N 150 U O2 O N N 151 U N3 N N N 152 U C4 C N N 153 U O4 O N N 154 U C5 C N N 155 U C6 C N N 156 U HOP3 H N N 157 U HOP2 H N N 158 U "H5'" H N N 159 U "H5''" H N N 160 U "H4'" H N N 161 U "H3'" H N N 162 U "HO3'" H N N 163 U "H2'" H N N 164 U "HO2'" H N N 165 U "H1'" H N N 166 U H3 H N N 167 U H5 H N N 168 U H6 H N N 169 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GLN N CA sing N N 116 GLN N H sing N N 117 GLN N H2 sing N N 118 GLN CA C sing N N 119 GLN CA CB sing N N 120 GLN CA HA sing N N 121 GLN C O doub N N 122 GLN C OXT sing N N 123 GLN CB CG sing N N 124 GLN CB HB2 sing N N 125 GLN CB HB3 sing N N 126 GLN CG CD sing N N 127 GLN CG HG2 sing N N 128 GLN CG HG3 sing N N 129 GLN CD OE1 doub N N 130 GLN CD NE2 sing N N 131 GLN NE2 HE21 sing N N 132 GLN NE2 HE22 sing N N 133 GLN OXT HXT sing N N 134 HOH O H1 sing N N 135 HOH O H2 sing N N 136 U OP3 P sing N N 137 U OP3 HOP3 sing N N 138 U P OP1 doub N N 139 U P OP2 sing N N 140 U P "O5'" sing N N 141 U OP2 HOP2 sing N N 142 U "O5'" "C5'" sing N N 143 U "C5'" "C4'" sing N N 144 U "C5'" "H5'" sing N N 145 U "C5'" "H5''" sing N N 146 U "C4'" "O4'" sing N N 147 U "C4'" "C3'" sing N N 148 U "C4'" "H4'" sing N N 149 U "O4'" "C1'" sing N N 150 U "C3'" "O3'" sing N N 151 U "C3'" "C2'" sing N N 152 U "C3'" "H3'" sing N N 153 U "O3'" "HO3'" sing N N 154 U "C2'" "O2'" sing N N 155 U "C2'" "C1'" sing N N 156 U "C2'" "H2'" sing N N 157 U "O2'" "HO2'" sing N N 158 U "C1'" N1 sing N N 159 U "C1'" "H1'" sing N N 160 U N1 C2 sing N N 161 U N1 C6 sing N N 162 U C2 O2 doub N N 163 U C2 N3 sing N N 164 U N3 C4 sing N N 165 U N3 H3 sing N N 166 U C4 O4 doub N N 167 U C4 C5 sing N N 168 U C5 C6 doub N N 169 U C5 H5 sing N N 170 U C6 H6 sing N N 171 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6QN3 'double helix' 6QN3 'a-form double helix' 6QN3 'hairpin loop' 6QN3 tetraloop 6QN3 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 13 1_555 A U 10 1_555 -0.865 4.400 0.132 7.988 1.301 109.947 1 A_G13:U10_A A 13 ? A 10 ? ? 6 1 A G 14 1_555 A C 9 1_555 -0.260 -0.074 -0.118 -0.480 1.291 2.259 2 A_G14:C9_A A 14 ? A 9 ? 19 1 1 A G 15 1_555 A C 8 1_555 -0.244 -0.166 0.004 -6.960 -6.189 0.358 3 A_G15:C8_A A 15 ? A 8 ? 19 1 1 A G 16 1_555 A C 7 1_555 -0.084 0.011 0.030 -3.919 2.117 4.008 4 A_G16:C7_A A 16 ? A 7 ? 19 1 1 A C 17 1_555 A A 6 1_555 4.392 -0.575 0.478 1.724 14.894 4.448 5 A_C17:A6_A A 17 ? A 6 ? ? 1 1 B G 36 1_555 A C 5 1_555 -0.139 -0.116 0.011 -13.573 -4.777 0.422 6 B_G36:C5_A B 36 ? A 5 ? 19 1 1 B A 37 1_555 A U 4 1_555 -0.006 -0.155 0.158 -7.845 -2.455 2.937 7 B_A37:U4_A B 37 ? A 4 ? 20 1 1 B A 38 1_555 A U 3 1_555 0.147 -0.226 0.147 3.147 -10.537 1.509 8 B_A38:U3_A B 38 ? A 3 ? 20 1 1 B C 39 1_555 A G 2 1_555 0.035 -0.105 0.269 3.794 -7.770 -0.256 9 B_C39:G2_A B 39 ? A 2 ? 19 1 1 B G 40 1_555 A C 1 1_555 -0.120 -0.184 0.415 4.185 -4.623 2.741 10 B_G40:C1_A B 40 ? A 1 ? 19 1 1 B G 41 1_555 A C 19 1_555 -0.187 -0.137 -0.294 -5.065 3.051 -0.913 11 B_G41:C19_A B 41 ? A 19 ? 19 1 1 B G 42 1_555 B A 33 1_555 -0.763 1.293 -0.021 -7.237 -0.228 -15.576 12 B_G42:A33_B B 42 ? B 33 ? 8 1 1 B A 43 1_555 B U 32 1_555 -0.072 0.041 0.119 3.210 -11.968 1.527 13 B_A43:U32_B B 43 ? B 32 ? 20 1 1 B U 44 1_555 B G 31 1_555 2.401 -0.786 0.082 5.139 -17.100 1.146 14 B_U44:G31_B B 44 ? B 31 ? 28 1 1 B U 45 1_555 B A 30 1_555 -0.058 -0.225 0.127 2.418 -9.309 -1.191 15 B_U45:A30_B B 45 ? B 30 ? 20 1 1 B C 46 1_555 B G 29 1_555 0.310 -0.105 0.177 2.027 -5.812 2.656 16 B_C46:G29_B B 46 ? B 29 ? 19 1 1 B U 47 1_555 B G 28 1_555 2.149 -0.507 0.064 4.167 -10.029 2.185 17 B_U47:G28_B B 47 ? B 28 ? 28 1 1 B C 48 1_555 B G 27 1_555 0.235 -0.211 -0.163 0.355 -7.670 -1.850 18 B_C48:G27_B B 48 ? B 27 ? 19 1 1 B A 49 1_555 B U 26 1_555 0.201 -0.074 0.475 -1.459 -6.713 1.631 19 B_A49:U26_B B 49 ? B 26 ? 20 1 1 B U 50 1_555 B A 25 1_555 0.248 -0.167 0.022 6.485 -10.537 1.946 20 B_U50:A25_B B 50 ? B 25 ? 20 1 1 A A 25 1_555 A U 50 1_555 -0.017 -0.148 0.495 -3.730 -10.435 -0.272 21 A_A25:U50_A A 25 ? A 50 ? 20 1 1 A U 26 1_555 A A 49 1_555 0.114 0.250 -0.050 11.420 -12.596 7.625 22 A_U26:A49_A A 26 ? A 49 ? 20 1 1 A G 27 1_555 A C 48 1_555 0.184 -0.046 -0.043 6.301 0.222 -0.619 23 A_G27:C48_A A 27 ? A 48 ? 19 1 1 A G 28 1_555 A U 47 1_555 -1.431 0.200 -0.195 1.160 -4.734 -6.309 24 A_G28:U47_A A 28 ? A 47 ? 28 1 1 A G 29 1_555 A C 46 1_555 -0.060 0.088 0.096 -2.824 -0.572 -2.870 25 A_G29:C46_A A 29 ? A 46 ? 19 1 1 A A 30 1_555 A U 45 1_555 -0.001 -0.061 -0.274 -6.567 -4.117 -4.044 26 A_A30:U45_A A 30 ? A 45 ? 20 1 1 A G 31 1_555 A U 44 1_555 -2.506 -0.569 0.045 -9.917 -10.570 -3.071 27 A_G31:U44_A A 31 ? A 44 ? 28 1 1 A U 32 1_555 A A 43 1_555 -0.176 -0.043 0.391 -6.294 -12.771 -0.170 28 A_U32:A43_A A 32 ? A 43 ? 20 1 1 A A 33 1_555 A G 42 1_555 -0.060 1.473 -0.396 9.018 7.297 -22.627 29 A_A33:G42_A A 33 ? A 42 ? 8 1 1 B C 19 1_555 A G 41 1_555 0.166 -0.102 0.055 -5.101 3.946 -0.297 30 B_C19:G41_A B 19 ? A 41 ? 19 1 1 B C 1 1_555 A G 40 1_555 0.342 -0.145 0.149 -4.931 -6.278 0.732 31 B_C1:G40_A B 1 ? A 40 ? 19 1 1 B G 2 1_555 A C 39 1_555 -0.235 -0.250 0.132 -5.447 -10.072 -3.260 32 B_G2:C39_A B 2 ? A 39 ? 19 1 1 B U 3 1_555 A A 38 1_555 -0.078 -0.020 0.239 -5.214 -6.237 0.705 33 B_U3:A38_A B 3 ? A 38 ? 20 1 1 B U 4 1_555 A A 37 1_555 -0.067 -0.055 0.646 0.750 -2.972 0.920 34 B_U4:A37_A B 4 ? A 37 ? 20 1 1 B C 5 1_555 A G 36 1_555 0.162 -0.044 0.318 8.529 -6.722 -1.319 35 B_C5:G36_A B 5 ? A 36 ? 19 1 1 B A 6 1_555 B C 17 1_555 -5.072 -0.852 0.372 -0.030 7.502 6.160 36 B_A6:C17_B B 6 ? B 17 ? ? ? 1 B C 7 1_555 B G 16 1_555 0.039 -0.061 -0.229 8.587 -2.262 1.531 37 B_C7:G16_B B 7 ? B 16 ? 19 1 1 B C 8 1_555 B G 15 1_555 0.215 -0.145 -0.043 5.400 -5.337 3.113 38 B_C8:G15_B B 8 ? B 15 ? 19 1 1 B C 9 1_555 B G 14 1_555 0.205 -0.088 -0.202 2.441 -1.425 3.714 39 B_C9:G14_B B 9 ? B 14 ? 19 1 1 B U 10 1_555 B G 13 1_555 1.208 -5.026 0.089 -11.839 -1.812 -103.341 40 B_U10:G13_B B 10 ? B 13 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 13 1_555 A U 10 1_555 A G 14 1_555 A C 9 1_555 -0.880 -3.735 0.126 120.929 -118.156 59.123 -1.485 0.840 1.783 -61.009 -62.441 170.496 1 AA_G13G14:C9U10_AA A 13 ? A 10 ? A 14 ? A 9 ? 1 A G 14 1_555 A C 9 1_555 A G 15 1_555 A C 8 1_555 0.329 -2.279 3.502 1.081 1.867 29.807 -4.827 -0.402 3.366 3.623 -2.097 29.883 2 AA_G14G15:C8C9_AA A 14 ? A 9 ? A 15 ? A 8 ? 1 A G 15 1_555 A C 8 1_555 A G 16 1_555 A C 7 1_555 0.647 -2.310 3.118 -1.297 5.830 30.360 -5.330 -1.435 2.611 10.999 2.447 30.929 3 AA_G15G16:C7C8_AA A 15 ? A 8 ? A 16 ? A 7 ? 1 A G 16 1_555 A C 7 1_555 A C 17 1_555 A A 6 1_555 -0.224 -1.771 3.179 -1.029 2.829 42.709 -2.696 0.209 3.066 3.878 1.411 42.810 4 AA_G16C17:A6C7_AA A 16 ? A 7 ? A 17 ? A 6 ? 1 A C 17 1_555 A A 6 1_555 B G 36 1_555 A C 5 1_555 -4.114 -0.554 3.402 -2.296 -5.303 46.149 -0.220 5.003 3.630 -6.734 2.916 46.490 5 AB_C17G36:C5A6_AA A 17 ? A 6 ? B 36 ? A 5 ? 1 B G 36 1_555 A C 5 1_555 B A 37 1_555 A U 4 1_555 -1.006 -2.303 3.044 -0.478 4.647 26.630 -5.958 2.045 2.628 9.991 1.028 27.029 6 BB_G36A37:U4C5_AA B 36 ? A 5 ? B 37 ? A 4 ? 1 B A 37 1_555 A U 4 1_555 B A 38 1_555 A U 3 1_555 0.265 -0.930 2.941 0.686 9.664 29.394 -3.349 -0.383 2.521 18.425 -1.307 30.916 7 BB_A37A38:U3U4_AA B 37 ? A 4 ? B 38 ? A 3 ? 1 B A 38 1_555 A U 3 1_555 B C 39 1_555 A G 2 1_555 0.268 -1.409 3.232 -0.278 7.077 32.925 -3.523 -0.505 2.873 12.309 0.483 33.657 8 BB_A38C39:G2U3_AA B 38 ? A 3 ? B 39 ? A 2 ? 1 B C 39 1_555 A G 2 1_555 B G 40 1_555 A C 1 1_555 1.066 -1.730 2.991 2.153 7.377 31.244 -4.267 -1.591 2.591 13.443 -3.923 32.153 9 BB_C39G40:C1G2_AA B 39 ? A 2 ? B 40 ? A 1 ? 1 B G 40 1_555 A C 1 1_555 B G 41 1_555 A C 19 1_555 2.060 -1.763 3.683 3.138 -3.409 42.387 -2.023 -2.465 3.942 -4.698 -4.325 42.628 10 BB_G40G41:C19C1_AA B 40 ? A 1 ? B 41 ? A 19 ? 1 B G 41 1_555 A C 19 1_555 B G 42 1_555 B A 33 1_555 1.355 -2.711 3.315 1.481 2.903 43.418 -3.933 -1.685 3.178 3.918 -1.998 43.535 11 BB_G41G42:A33C19_BA B 41 ? A 19 ? B 42 ? B 33 ? 1 B G 42 1_555 B A 33 1_555 B A 43 1_555 B U 32 1_555 0.496 -1.848 2.966 -3.572 11.207 27.939 -5.337 -1.522 2.015 22.018 7.017 30.269 12 BB_G42A43:U32A33_BB B 42 ? B 33 ? B 43 ? B 32 ? 1 B A 43 1_555 B U 32 1_555 B U 44 1_555 B G 31 1_555 -0.205 -0.933 3.226 -0.020 9.106 42.607 -2.100 0.274 2.975 12.363 0.028 43.525 13 BB_A43U44:G31U32_BB B 43 ? B 32 ? B 44 ? B 31 ? 1 B U 44 1_555 B G 31 1_555 B U 45 1_555 B A 30 1_555 -0.407 -1.884 3.008 1.415 12.555 23.884 -6.535 1.154 1.784 27.971 -3.153 26.978 14 BB_U44U45:A30G31_BB B 44 ? B 31 ? B 45 ? B 30 ? 1 B U 45 1_555 B A 30 1_555 B C 46 1_555 B G 29 1_555 0.089 -1.708 3.234 -1.277 1.407 33.842 -3.151 -0.354 3.157 2.414 2.192 33.894 15 BB_U45C46:G29A30_BB B 45 ? B 30 ? B 46 ? B 29 ? 1 B C 46 1_555 B G 29 1_555 B U 47 1_555 B G 28 1_555 0.030 -1.578 2.993 2.192 6.157 40.286 -2.861 0.169 2.731 8.869 -3.158 40.791 16 BB_C46U47:G28G29_BB B 46 ? B 29 ? B 47 ? B 28 ? 1 B U 47 1_555 B G 28 1_555 B C 48 1_555 B G 27 1_555 -0.601 -2.095 3.143 4.322 9.425 23.458 -6.930 2.367 2.022 21.862 -10.026 25.618 17 BB_U47C48:G27G28_BB B 47 ? B 28 ? B 48 ? B 27 ? 1 B C 48 1_555 B G 27 1_555 B A 49 1_555 B U 26 1_555 0.219 -1.652 2.991 -4.370 14.837 30.483 -4.705 -0.930 1.953 26.207 7.719 34.099 18 BB_C48A49:U26G27_BB B 48 ? B 27 ? B 49 ? B 26 ? 1 B A 49 1_555 B U 26 1_555 B U 50 1_555 B A 25 1_555 -0.087 -1.293 3.068 4.207 7.015 32.279 -3.307 0.782 2.702 12.370 -7.420 33.273 19 BB_A49U50:A25U26_BB B 49 ? B 26 ? B 50 ? B 25 ? 1 A A 25 1_555 A U 50 1_555 A U 26 1_555 A A 49 1_555 0.295 -0.574 2.677 2.055 8.019 28.448 -2.479 -0.231 2.442 15.898 -4.073 29.604 20 AA_A25U26:A49U50_AA A 25 ? A 50 ? A 26 ? A 49 ? 1 A U 26 1_555 A A 49 1_555 A G 27 1_555 A C 48 1_555 -0.265 -1.662 3.118 -6.436 15.369 30.757 -4.754 -0.389 2.092 26.663 11.166 34.884 21 AA_U26G27:C48A49_AA A 26 ? A 49 ? A 27 ? A 48 ? 1 A G 27 1_555 A C 48 1_555 A G 28 1_555 A U 47 1_555 0.144 -2.377 3.129 -3.004 11.036 27.663 -6.485 -0.790 2.025 21.931 5.969 29.892 22 AA_G27G28:U47C48_AA A 27 ? A 48 ? A 28 ? A 47 ? 1 A G 28 1_555 A U 47 1_555 A G 29 1_555 A C 46 1_555 -0.350 -2.421 3.325 -2.032 7.506 36.243 -4.765 0.292 2.800 11.897 3.220 37.040 23 AA_G28G29:C46U47_AA A 28 ? A 47 ? A 29 ? A 46 ? 1 A G 29 1_555 A C 46 1_555 A A 30 1_555 A U 45 1_555 -0.571 -1.740 3.364 2.349 6.786 34.590 -3.847 1.280 2.937 11.263 -3.898 35.305 24 AA_G29A30:U45C46_AA A 29 ? A 46 ? A 30 ? A 45 ? 1 A A 30 1_555 A U 45 1_555 A G 31 1_555 A U 44 1_555 -0.281 -1.651 3.407 -4.512 8.095 26.994 -5.159 -0.436 2.813 16.727 9.323 28.512 25 AA_A30G31:U44U45_AA A 30 ? A 45 ? A 31 ? A 44 ? 1 A G 31 1_555 A U 44 1_555 A U 32 1_555 A A 43 1_555 0.303 -1.146 3.137 -2.856 6.674 40.225 -2.323 -0.726 2.891 9.609 4.112 40.848 26 AA_G31U32:A43U44_AA A 31 ? A 44 ? A 32 ? A 43 ? 1 A U 32 1_555 A A 43 1_555 A A 33 1_555 A G 42 1_555 -0.950 -1.518 3.038 9.077 20.007 26.657 -4.894 2.661 1.255 36.515 -16.566 34.417 27 AA_U32A33:G42A43_AA A 32 ? A 43 ? A 33 ? A 42 ? 1 A A 33 1_555 A G 42 1_555 B C 19 1_555 A G 41 1_555 -1.016 -3.004 3.532 -8.180 2.452 45.914 -4.015 0.541 3.498 3.112 10.380 46.659 28 AB_A33C19:G41G42_AA A 33 ? A 42 ? B 19 ? A 41 ? 1 B C 19 1_555 A G 41 1_555 B C 1 1_555 A G 40 1_555 -1.878 -1.809 3.232 -1.698 -3.054 44.222 -2.108 2.328 3.409 -4.049 2.252 44.353 29 BB_C19C1:G40G41_AA B 19 ? A 41 ? B 1 ? A 40 ? 1 B C 1 1_555 A G 40 1_555 B G 2 1_555 A C 39 1_555 -1.091 -1.842 3.140 0.257 4.147 30.768 -4.177 2.083 2.864 7.771 -0.482 31.041 30 BB_C1G2:C39G40_AA B 1 ? A 40 ? B 2 ? A 39 ? 1 B G 2 1_555 A C 39 1_555 B U 3 1_555 A A 38 1_555 -0.066 -1.237 3.178 -2.385 7.354 32.256 -3.322 -0.258 2.833 13.004 4.217 33.145 31 BB_G2U3:A38C39_AA B 2 ? A 39 ? B 3 ? A 38 ? 1 B U 3 1_555 A A 38 1_555 B U 4 1_555 A A 37 1_555 -0.187 -1.192 3.145 -3.445 7.914 29.503 -3.679 -0.269 2.744 15.136 6.589 30.713 32 BB_U3U4:A37A38_AA B 3 ? A 38 ? B 4 ? A 37 ? 1 B U 4 1_555 A A 37 1_555 B C 5 1_555 A G 36 1_555 0.888 -2.280 2.829 2.254 3.983 28.870 -5.236 -1.356 2.558 7.926 -4.485 29.223 33 BB_U4C5:G36A37_AA B 4 ? A 37 ? B 5 ? A 36 ? 1 B C 5 1_555 A G 36 1_555 B A 6 1_555 B C 17 1_555 4.585 -0.516 3.123 7.165 -6.414 38.000 0.071 -5.902 3.924 -9.663 -10.793 39.154 34 BB_C5A6:C17G36_BA B 5 ? A 36 ? B 6 ? B 17 ? 1 B A 6 1_555 B C 17 1_555 B C 7 1_555 B G 16 1_555 -0.131 -1.121 3.093 1.398 5.997 49.146 -1.749 0.252 2.941 7.177 -1.673 49.506 35 BB_A6C7:G16C17_BB B 6 ? B 17 ? B 7 ? B 16 ? 1 B C 7 1_555 B G 16 1_555 B C 8 1_555 B G 15 1_555 -0.553 -2.202 3.310 -1.919 7.442 30.781 -5.318 0.679 2.744 13.753 3.547 31.703 36 BB_C7C8:G15G16_BB B 7 ? B 16 ? B 8 ? B 15 ? 1 B C 8 1_555 B G 15 1_555 B C 9 1_555 B G 14 1_555 -0.518 -1.928 3.378 -2.692 4.394 29.602 -4.621 0.448 3.100 8.518 5.219 30.037 37 BB_C8C9:G14G15_BB B 8 ? B 15 ? B 9 ? B 14 ? 1 B C 9 1_555 B G 14 1_555 B U 10 1_555 B G 13 1_555 -1.618 -1.084 3.463 8.394 6.278 93.102 -0.864 1.270 3.282 4.313 -5.766 93.555 38 BB_C9U10:G13G14_BB B 9 ? B 14 ? B 10 ? B 13 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number A18604 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6QN3 _atom_sites.fract_transf_matrix[1][1] 0.013072 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008641 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012410 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P # loop_