data_6R99 # _entry.id 6R99 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6R99 pdb_00006r99 10.2210/pdb6r99/pdb WWPDB D_1292101022 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6R99 _pdbx_database_status.recvd_initial_deposition_date 2019-04-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Luebben, A.V.' 1 ? 'Sheldrick, G.M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first eabj8633 _citation.page_last eabj8633 _citation.title 'Cln5 represents a new type of cysteine-based S -depalmitoylase linked to neurodegeneration.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abj8633 _citation.pdbx_database_id_PubMed 35427157 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luebben, A.V.' 1 0000-0003-2867-9468 primary 'Bender, D.' 2 0000-0002-2975-4186 primary 'Becker, S.' 3 ? primary 'Crowther, L.M.' 4 ? primary 'Erven, I.' 5 0000-0002-1095-6861 primary 'Hofmann, K.' 6 0000-0002-2289-9083 primary 'Soding, J.' 7 0000-0001-9642-8244 primary 'Klemp, H.' 8 0000-0002-3147-3017 primary 'Bellotti, C.' 9 0000-0002-3999-2807 primary 'Stauble, A.' 10 0000-0001-9691-1690 primary 'Qiu, T.' 11 0000-0002-7168-0715 primary 'Kathayat, R.S.' 12 0000-0002-9159-2413 primary 'Dickinson, B.C.' 13 0000-0002-9616-1911 primary 'Gartner, J.' 14 ? primary 'Sheldrick, G.M.' 15 ? primary 'Kratzner, R.' 16 ? primary 'Steinfeld, R.' 17 0000-0003-0956-6601 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6R99 _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.420 _cell.length_a_esd ? _cell.length_b 58.420 _cell.length_b_esd ? _cell.length_c 179.050 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ceroid-lipofuscinosis neuronal protein 5' 46905.746 1 ? ? ? 'protein contains selenomethionine and is glycosylated' 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 5 water nat water 18.015 35 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ceroid-lipofuscinosis,neuronal 5,isoform CRA_a' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RRNLRLGPSSGADAQGQGAPRPGLAAPR(MSE)LLPPASQASRGSGSTGCSL(MSE)AQEVDTAQGAE(MSE)RR GAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQAKYTFCPTGSPIPV(MSE)EGDDD IEVFRLQAPVWEFKYGDLLGHLKI(MSE)HDAIGFRSTLTGKNYT(MSE)EWYELFQLGNCTFPHLRPE(MSE)DAPFWC NQGAACFFEGIDDVHWKENGTLVQVATISGN(MSE)FNQ(MSE)AKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDC SKFVLRTFNKLAEFGAEFKNIETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI FDAVIVHKQFYLFYNFEYWFLP(MSE)KFPFIKITYEEIPLPIRNKTLSGL ; _entity_poly.pdbx_seq_one_letter_code_can ;MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALA LLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQAKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLG HLKIMHDAIGFRSTLTGKNYTMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKNIETNYTRIFLYSGEPTYLGN ETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQIFDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIR NKTLSGL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 ARG n 1 4 ASN n 1 5 LEU n 1 6 ARG n 1 7 LEU n 1 8 GLY n 1 9 PRO n 1 10 SER n 1 11 SER n 1 12 GLY n 1 13 ALA n 1 14 ASP n 1 15 ALA n 1 16 GLN n 1 17 GLY n 1 18 GLN n 1 19 GLY n 1 20 ALA n 1 21 PRO n 1 22 ARG n 1 23 PRO n 1 24 GLY n 1 25 LEU n 1 26 ALA n 1 27 ALA n 1 28 PRO n 1 29 ARG n 1 30 MSE n 1 31 LEU n 1 32 LEU n 1 33 PRO n 1 34 PRO n 1 35 ALA n 1 36 SER n 1 37 GLN n 1 38 ALA n 1 39 SER n 1 40 ARG n 1 41 GLY n 1 42 SER n 1 43 GLY n 1 44 SER n 1 45 THR n 1 46 GLY n 1 47 CYS n 1 48 SER n 1 49 LEU n 1 50 MSE n 1 51 ALA n 1 52 GLN n 1 53 GLU n 1 54 VAL n 1 55 ASP n 1 56 THR n 1 57 ALA n 1 58 GLN n 1 59 GLY n 1 60 ALA n 1 61 GLU n 1 62 MSE n 1 63 ARG n 1 64 ARG n 1 65 GLY n 1 66 ALA n 1 67 GLY n 1 68 ALA n 1 69 ALA n 1 70 ARG n 1 71 GLY n 1 72 ARG n 1 73 ALA n 1 74 SER n 1 75 TRP n 1 76 CYS n 1 77 TRP n 1 78 ALA n 1 79 LEU n 1 80 ALA n 1 81 LEU n 1 82 LEU n 1 83 TRP n 1 84 LEU n 1 85 ALA n 1 86 VAL n 1 87 VAL n 1 88 PRO n 1 89 GLY n 1 90 TRP n 1 91 SER n 1 92 ARG n 1 93 VAL n 1 94 SER n 1 95 GLY n 1 96 ILE n 1 97 PRO n 1 98 SER n 1 99 ARG n 1 100 ARG n 1 101 HIS n 1 102 TRP n 1 103 PRO n 1 104 VAL n 1 105 PRO n 1 106 TYR n 1 107 LYS n 1 108 ARG n 1 109 PHE n 1 110 ASP n 1 111 PHE n 1 112 ARG n 1 113 PRO n 1 114 LYS n 1 115 PRO n 1 116 ASP n 1 117 PRO n 1 118 TYR n 1 119 CYS n 1 120 GLN n 1 121 ALA n 1 122 LYS n 1 123 TYR n 1 124 THR n 1 125 PHE n 1 126 CYS n 1 127 PRO n 1 128 THR n 1 129 GLY n 1 130 SER n 1 131 PRO n 1 132 ILE n 1 133 PRO n 1 134 VAL n 1 135 MSE n 1 136 GLU n 1 137 GLY n 1 138 ASP n 1 139 ASP n 1 140 ASP n 1 141 ILE n 1 142 GLU n 1 143 VAL n 1 144 PHE n 1 145 ARG n 1 146 LEU n 1 147 GLN n 1 148 ALA n 1 149 PRO n 1 150 VAL n 1 151 TRP n 1 152 GLU n 1 153 PHE n 1 154 LYS n 1 155 TYR n 1 156 GLY n 1 157 ASP n 1 158 LEU n 1 159 LEU n 1 160 GLY n 1 161 HIS n 1 162 LEU n 1 163 LYS n 1 164 ILE n 1 165 MSE n 1 166 HIS n 1 167 ASP n 1 168 ALA n 1 169 ILE n 1 170 GLY n 1 171 PHE n 1 172 ARG n 1 173 SER n 1 174 THR n 1 175 LEU n 1 176 THR n 1 177 GLY n 1 178 LYS n 1 179 ASN n 1 180 TYR n 1 181 THR n 1 182 MSE n 1 183 GLU n 1 184 TRP n 1 185 TYR n 1 186 GLU n 1 187 LEU n 1 188 PHE n 1 189 GLN n 1 190 LEU n 1 191 GLY n 1 192 ASN n 1 193 CYS n 1 194 THR n 1 195 PHE n 1 196 PRO n 1 197 HIS n 1 198 LEU n 1 199 ARG n 1 200 PRO n 1 201 GLU n 1 202 MSE n 1 203 ASP n 1 204 ALA n 1 205 PRO n 1 206 PHE n 1 207 TRP n 1 208 CYS n 1 209 ASN n 1 210 GLN n 1 211 GLY n 1 212 ALA n 1 213 ALA n 1 214 CYS n 1 215 PHE n 1 216 PHE n 1 217 GLU n 1 218 GLY n 1 219 ILE n 1 220 ASP n 1 221 ASP n 1 222 VAL n 1 223 HIS n 1 224 TRP n 1 225 LYS n 1 226 GLU n 1 227 ASN n 1 228 GLY n 1 229 THR n 1 230 LEU n 1 231 VAL n 1 232 GLN n 1 233 VAL n 1 234 ALA n 1 235 THR n 1 236 ILE n 1 237 SER n 1 238 GLY n 1 239 ASN n 1 240 MSE n 1 241 PHE n 1 242 ASN n 1 243 GLN n 1 244 MSE n 1 245 ALA n 1 246 LYS n 1 247 TRP n 1 248 VAL n 1 249 LYS n 1 250 GLN n 1 251 ASP n 1 252 ASN n 1 253 GLU n 1 254 THR n 1 255 GLY n 1 256 ILE n 1 257 TYR n 1 258 TYR n 1 259 GLU n 1 260 THR n 1 261 TRP n 1 262 ASN n 1 263 VAL n 1 264 LYS n 1 265 ALA n 1 266 SER n 1 267 PRO n 1 268 GLU n 1 269 LYS n 1 270 GLY n 1 271 ALA n 1 272 GLU n 1 273 THR n 1 274 TRP n 1 275 PHE n 1 276 ASP n 1 277 SER n 1 278 TYR n 1 279 ASP n 1 280 CYS n 1 281 SER n 1 282 LYS n 1 283 PHE n 1 284 VAL n 1 285 LEU n 1 286 ARG n 1 287 THR n 1 288 PHE n 1 289 ASN n 1 290 LYS n 1 291 LEU n 1 292 ALA n 1 293 GLU n 1 294 PHE n 1 295 GLY n 1 296 ALA n 1 297 GLU n 1 298 PHE n 1 299 LYS n 1 300 ASN n 1 301 ILE n 1 302 GLU n 1 303 THR n 1 304 ASN n 1 305 TYR n 1 306 THR n 1 307 ARG n 1 308 ILE n 1 309 PHE n 1 310 LEU n 1 311 TYR n 1 312 SER n 1 313 GLY n 1 314 GLU n 1 315 PRO n 1 316 THR n 1 317 TYR n 1 318 LEU n 1 319 GLY n 1 320 ASN n 1 321 GLU n 1 322 THR n 1 323 SER n 1 324 VAL n 1 325 PHE n 1 326 GLY n 1 327 PRO n 1 328 THR n 1 329 GLY n 1 330 ASN n 1 331 LYS n 1 332 THR n 1 333 LEU n 1 334 GLY n 1 335 LEU n 1 336 ALA n 1 337 ILE n 1 338 LYS n 1 339 ARG n 1 340 PHE n 1 341 TYR n 1 342 TYR n 1 343 PRO n 1 344 PHE n 1 345 LYS n 1 346 PRO n 1 347 HIS n 1 348 LEU n 1 349 PRO n 1 350 THR n 1 351 LYS n 1 352 GLU n 1 353 PHE n 1 354 LEU n 1 355 LEU n 1 356 SER n 1 357 LEU n 1 358 LEU n 1 359 GLN n 1 360 ILE n 1 361 PHE n 1 362 ASP n 1 363 ALA n 1 364 VAL n 1 365 ILE n 1 366 VAL n 1 367 HIS n 1 368 LYS n 1 369 GLN n 1 370 PHE n 1 371 TYR n 1 372 LEU n 1 373 PHE n 1 374 TYR n 1 375 ASN n 1 376 PHE n 1 377 GLU n 1 378 TYR n 1 379 TRP n 1 380 PHE n 1 381 LEU n 1 382 PRO n 1 383 MSE n 1 384 LYS n 1 385 PHE n 1 386 PRO n 1 387 PHE n 1 388 ILE n 1 389 LYS n 1 390 ILE n 1 391 THR n 1 392 TYR n 1 393 GLU n 1 394 GLU n 1 395 ILE n 1 396 PRO n 1 397 LEU n 1 398 PRO n 1 399 ILE n 1 400 ARG n 1 401 ASN n 1 402 LYS n 1 403 THR n 1 404 LEU n 1 405 SER n 1 406 GLY n 1 407 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 407 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CLN5, hCG_28176' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293T _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pcDNA3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A024R644_HUMAN _struct_ref.pdbx_db_accession A0A024R644 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALA LLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQAKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLG HLKIMHDAIGFRSTLTGKNYTMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKNIETNYTRIFLYSGEPTYLGN ETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQIFDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIR NKTLSGL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6R99 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 407 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A024R644 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 407 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 407 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6R99 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 3350, magnesium nitrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-07-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 63.120 _reflns.entry_id 6R99 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.650 _reflns.d_resolution_low 44.046 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19772 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 27.822 _reflns.pdbx_Rmerge_I_obs 0.229 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.530 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.034 _reflns.pdbx_scaling_rejects 1064 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.233 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 550105 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 2.650 2.720 ? 1.550 ? 14369 1410 ? 1412 100.000 ? ? ? ? 1.294 ? ? ? ? ? ? ? ? 10.176 ? ? ? ? 1.362 ? ? 1 1 0.759 ? ? 2.720 2.800 ? 1.750 ? 14487 1440 ? 1439 99.900 ? ? ? ? 1.180 ? ? ? ? ? ? ? ? 10.067 ? ? ? ? 1.244 ? ? 2 1 0.713 ? ? 2.800 2.880 ? 2.760 ? 20343 1386 ? 1386 100.000 ? ? ? ? 0.938 ? ? ? ? ? ? ? ? 14.677 ? ? ? ? 0.972 ? ? 3 1 0.882 ? ? 2.880 2.970 ? 3.880 ? 22256 1350 ? 1350 100.000 ? ? ? ? 0.722 ? ? ? ? ? ? ? ? 16.486 ? ? ? ? 0.745 ? ? 4 1 0.910 ? ? 2.970 3.060 ? 5.010 ? 22102 1352 ? 1352 100.000 ? ? ? ? 0.552 ? ? ? ? ? ? ? ? 16.348 ? ? ? ? 0.570 ? ? 5 1 0.956 ? ? 3.060 3.170 ? 6.470 ? 36746 1226 ? 1226 100.000 ? ? ? ? 0.963 ? ? ? ? ? ? ? ? 29.972 ? ? ? ? 0.979 ? ? 6 1 0.967 ? ? 3.170 3.290 ? 7.480 ? 43727 1246 ? 1246 100.000 ? ? ? ? 0.837 ? ? ? ? ? ? ? ? 35.094 ? ? ? ? 0.849 ? ? 7 1 0.979 ? ? 3.290 3.430 ? 9.710 ? 41448 1188 ? 1188 100.000 ? ? ? ? 0.606 ? ? ? ? ? ? ? ? 34.889 ? ? ? ? 0.615 ? ? 8 1 0.985 ? ? 3.430 3.580 ? 11.900 ? 38432 1101 ? 1101 100.000 ? ? ? ? 0.479 ? ? ? ? ? ? ? ? 34.906 ? ? ? ? 0.486 ? ? 9 1 0.990 ? ? 3.580 3.750 ? 14.570 ? 41030 1084 ? 1084 100.000 ? ? ? ? 0.389 ? ? ? ? ? ? ? ? 37.851 ? ? ? ? 0.395 ? ? 10 1 0.993 ? ? 3.750 3.950 ? 17.440 ? 37419 1007 ? 1007 100.000 ? ? ? ? 0.308 ? ? ? ? ? ? ? ? 37.159 ? ? ? ? 0.312 ? ? 11 1 0.996 ? ? 3.950 4.190 ? 20.710 ? 36546 987 ? 987 100.000 ? ? ? ? 0.256 ? ? ? ? ? ? ? ? 37.027 ? ? ? ? 0.259 ? ? 12 1 0.996 ? ? 4.190 4.480 ? 24.670 ? 31617 904 ? 904 100.000 ? ? ? ? 0.191 ? ? ? ? ? ? ? ? 34.975 ? ? ? ? 0.194 ? ? 13 1 0.997 ? ? 4.480 4.840 ? 27.010 ? 30344 846 ? 846 100.000 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 35.868 ? ? ? ? 0.166 ? ? 14 1 0.998 ? ? 4.840 5.310 ? 29.350 ? 30126 788 ? 788 100.000 ? ? ? ? 0.150 ? ? ? ? ? ? ? ? 38.231 ? ? ? ? 0.152 ? ? 15 1 0.999 ? ? 5.310 5.930 ? 29.060 ? 25932 690 ? 690 100.000 ? ? ? ? 0.143 ? ? ? ? ? ? ? ? 37.583 ? ? ? ? 0.145 ? ? 16 1 0.999 ? ? 5.930 6.850 ? 28.720 ? 20839 605 ? 605 100.000 ? ? ? ? 0.134 ? ? ? ? ? ? ? ? 34.445 ? ? ? ? 0.136 ? ? 17 1 0.998 ? ? 6.850 8.390 ? 33.200 ? 20337 540 ? 540 100.000 ? ? ? ? 0.108 ? ? ? ? ? ? ? ? 37.661 ? ? ? ? 0.109 ? ? 18 1 0.999 ? ? 8.390 11.860 ? 43.610 ? 14757 404 ? 404 100.000 ? ? ? ? 0.080 ? ? ? ? ? ? ? ? 36.527 ? ? ? ? 0.081 ? ? 19 1 1.000 ? ? 11.860 44.046 ? 46.160 ? 7248 219 ? 217 99.100 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 33.401 ? ? ? ? 0.079 ? ? 20 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 113.800 _refine.B_iso_mean 57.0408 _refine.B_iso_min 29.110 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6R99 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 44.0460 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10354 _refine.ls_number_reflns_R_free 533 _refine.ls_number_reflns_R_work 9821 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_percent_reflns_R_free 5.1500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2220 _refine.ls_R_factor_R_free 0.2471 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2206 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.930 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.5800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 44.0460 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 2441 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 285 _refine_hist.pdbx_B_iso_mean_ligand 61.21 _refine_hist.pdbx_B_iso_mean_solvent 53.54 _refine_hist.pdbx_number_atoms_protein 2311 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 95 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 2494 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.727 ? 3406 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 369 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 429 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 3.243 ? 1427 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7002 2.9718 2538 . 116 2422 100.0000 . . . 0.3758 0.0000 0.2722 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.9718 3.4017 2523 . 135 2388 100.0000 . . . 0.3020 0.0000 0.2395 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 3.4017 4.2852 2574 . 141 2433 100.0000 . . . 0.2317 0.0000 0.2044 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 4.2852 44.0521 2719 . 141 2578 100.0000 . . . 0.2183 0.0000 0.2143 . . . . . . 4 . . . # _struct.entry_id 6R99 _struct.title 'Crystal Structure of Human CLN protein 5 (Ceroid Lipofuscinosis Neuronal Protein 5)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6R99 _struct_keywords.text 'neuronal ceroid lipofiscinosis, CLN5, circularly-permuted papain-like fold, glycoprotein, unknown function' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 188 ? PHE A 195 ? PHE A 188 PHE A 195 1 ? 8 HELX_P HELX_P2 AA2 ASP A 220 ? GLU A 226 ? ASP A 220 GLU A 226 1 ? 7 HELX_P HELX_P3 AA3 GLY A 238 ? GLY A 255 ? GLY A 238 GLY A 255 1 ? 18 HELX_P HELX_P4 AA4 ASP A 279 ? PHE A 294 ? ASP A 279 PHE A 294 1 ? 16 HELX_P HELX_P5 AA5 GLU A 321 ? PHE A 325 ? GLU A 321 PHE A 325 1 ? 5 HELX_P HELX_P6 AA6 ASN A 330 ? TYR A 342 ? ASN A 330 TYR A 342 1 ? 13 HELX_P HELX_P7 AA7 PRO A 343 ? LYS A 345 ? PRO A 343 LYS A 345 5 ? 3 HELX_P HELX_P8 AA8 LEU A 354 ? ILE A 365 ? LEU A 354 ILE A 365 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 119 SG ? ? ? 1_555 A CYS 208 SG ? ? A CYS 119 A CYS 208 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 126 SG ? ? ? 1_555 A CYS 214 SG ? ? A CYS 126 A CYS 214 1_555 ? ? ? ? ? ? ? 2.028 ? ? covale1 covale both ? A VAL 134 C ? ? ? 1_555 A MSE 135 N ? ? A VAL 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 135 C ? ? ? 1_555 A GLU 136 N ? ? A MSE 135 A GLU 136 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A ILE 164 C ? ? ? 1_555 A MSE 165 N ? ? A ILE 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 165 C ? ? ? 1_555 A HIS 166 N ? ? A MSE 165 A HIS 166 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale one ? A ASN 179 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 179 A NAG 501 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale6 covale both ? A THR 181 C ? ? ? 1_555 A MSE 182 N ? ? A THR 181 A MSE 182 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A MSE 182 C ? ? ? 1_555 A GLU 183 N ? ? A MSE 182 A GLU 183 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale one ? A ASN 192 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 192 B NAG 1 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale9 covale both ? A GLU 201 C ? ? ? 1_555 A MSE 202 N ? ? A GLU 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A MSE 202 C ? ? ? 1_555 A ASP 203 N ? ? A MSE 202 A ASP 203 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale both ? A ASN 239 C ? ? ? 1_555 A MSE 240 N ? ? A ASN 239 A MSE 240 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A MSE 240 C ? ? ? 1_555 A PHE 241 N ? ? A MSE 240 A PHE 241 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale13 covale both ? A GLN 243 C ? ? ? 1_555 A MSE 244 N ? ? A GLN 243 A MSE 244 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? A MSE 244 C ? ? ? 1_555 A ALA 245 N ? ? A MSE 244 A ALA 245 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale15 covale one ? A ASN 252 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 252 C NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale16 covale one ? A ASN 304 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 304 A NAG 507 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale17 covale both ? A PRO 382 C ? ? ? 1_555 A MSE 383 N ? ? A PRO 382 A MSE 383 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? A MSE 383 C ? ? ? 1_555 A LYS 384 N ? ? A MSE 383 A LYS 384 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale19 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale20 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale21 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.449 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 211 ? GLU A 217 ? GLY A 211 GLU A 217 AA1 2 ASN A 179 ? GLU A 186 ? ASN A 179 GLU A 186 AA1 3 MSE A 165 ? SER A 173 ? MSE A 165 SER A 173 AA1 4 ASP A 140 ? PRO A 149 ? ASP A 140 PRO A 149 AA1 5 THR A 229 ? SER A 237 ? THR A 229 SER A 237 AA2 1 THR A 273 ? PHE A 275 ? THR A 273 PHE A 275 AA2 2 ASN A 262 ? LYS A 264 ? ASN A 262 LYS A 264 AA2 3 ASN A 304 ? SER A 312 ? ASN A 304 SER A 312 AA2 4 GLU A 377 ? GLU A 394 ? GLU A 377 GLU A 394 AA2 5 THR A 316 ? ASN A 320 ? THR A 316 ASN A 320 AA3 1 THR A 273 ? PHE A 275 ? THR A 273 PHE A 275 AA3 2 ASN A 262 ? LYS A 264 ? ASN A 262 LYS A 264 AA3 3 ASN A 304 ? SER A 312 ? ASN A 304 SER A 312 AA3 4 GLU A 377 ? GLU A 394 ? GLU A 377 GLU A 394 AA3 5 GLN A 369 ? TYR A 374 ? GLN A 369 TYR A 374 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O CYS A 214 ? O CYS A 214 N GLU A 183 ? N GLU A 183 AA1 2 3 O TYR A 180 ? O TYR A 180 N PHE A 171 ? N PHE A 171 AA1 3 4 O HIS A 166 ? O HIS A 166 N ALA A 148 ? N ALA A 148 AA1 4 5 N ARG A 145 ? N ARG A 145 O VAL A 231 ? O VAL A 231 AA2 1 2 O TRP A 274 ? O TRP A 274 N VAL A 263 ? N VAL A 263 AA2 2 3 N ASN A 262 ? N ASN A 262 O ILE A 308 ? O ILE A 308 AA2 3 4 N PHE A 309 ? N PHE A 309 O LYS A 389 ? O LYS A 389 AA2 4 5 O TYR A 378 ? O TYR A 378 N LEU A 318 ? N LEU A 318 AA3 1 2 O TRP A 274 ? O TRP A 274 N VAL A 263 ? N VAL A 263 AA3 2 3 N ASN A 262 ? N ASN A 262 O ILE A 308 ? O ILE A 308 AA3 3 4 N PHE A 309 ? N PHE A 309 O LYS A 389 ? O LYS A 389 AA3 4 5 O LEU A 381 ? O LEU A 381 N PHE A 370 ? N PHE A 370 # _atom_sites.entry_id 6R99 _atom_sites.fract_transf_matrix[1][1] 0.017117 _atom_sites.fract_transf_matrix[1][2] 0.009883 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019766 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005585 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 ARG 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 GLY 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 SER 10 10 ? ? ? A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 GLY 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 ASP 14 14 ? ? ? A . n A 1 15 ALA 15 15 ? ? ? A . n A 1 16 GLN 16 16 ? ? ? A . n A 1 17 GLY 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 GLY 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 PRO 21 21 ? ? ? A . n A 1 22 ARG 22 22 ? ? ? A . n A 1 23 PRO 23 23 ? ? ? A . n A 1 24 GLY 24 24 ? ? ? A . n A 1 25 LEU 25 25 ? ? ? A . n A 1 26 ALA 26 26 ? ? ? A . n A 1 27 ALA 27 27 ? ? ? A . n A 1 28 PRO 28 28 ? ? ? A . n A 1 29 ARG 29 29 ? ? ? A . n A 1 30 MSE 30 30 ? ? ? A . n A 1 31 LEU 31 31 ? ? ? A . n A 1 32 LEU 32 32 ? ? ? A . n A 1 33 PRO 33 33 ? ? ? A . n A 1 34 PRO 34 34 ? ? ? A . n A 1 35 ALA 35 35 ? ? ? A . n A 1 36 SER 36 36 ? ? ? A . n A 1 37 GLN 37 37 ? ? ? A . n A 1 38 ALA 38 38 ? ? ? A . n A 1 39 SER 39 39 ? ? ? A . n A 1 40 ARG 40 40 ? ? ? A . n A 1 41 GLY 41 41 ? ? ? A . n A 1 42 SER 42 42 ? ? ? A . n A 1 43 GLY 43 43 ? ? ? A . n A 1 44 SER 44 44 ? ? ? A . n A 1 45 THR 45 45 ? ? ? A . n A 1 46 GLY 46 46 ? ? ? A . n A 1 47 CYS 47 47 ? ? ? A . n A 1 48 SER 48 48 ? ? ? A . n A 1 49 LEU 49 49 ? ? ? A . n A 1 50 MSE 50 50 ? ? ? A . n A 1 51 ALA 51 51 ? ? ? A . n A 1 52 GLN 52 52 ? ? ? A . n A 1 53 GLU 53 53 ? ? ? A . n A 1 54 VAL 54 54 ? ? ? A . n A 1 55 ASP 55 55 ? ? ? A . n A 1 56 THR 56 56 ? ? ? A . n A 1 57 ALA 57 57 ? ? ? A . n A 1 58 GLN 58 58 ? ? ? A . n A 1 59 GLY 59 59 ? ? ? A . n A 1 60 ALA 60 60 ? ? ? A . n A 1 61 GLU 61 61 ? ? ? A . n A 1 62 MSE 62 62 ? ? ? A . n A 1 63 ARG 63 63 ? ? ? A . n A 1 64 ARG 64 64 ? ? ? A . n A 1 65 GLY 65 65 ? ? ? A . n A 1 66 ALA 66 66 ? ? ? A . n A 1 67 GLY 67 67 ? ? ? A . n A 1 68 ALA 68 68 ? ? ? A . n A 1 69 ALA 69 69 ? ? ? A . n A 1 70 ARG 70 70 ? ? ? A . n A 1 71 GLY 71 71 ? ? ? A . n A 1 72 ARG 72 72 ? ? ? A . n A 1 73 ALA 73 73 ? ? ? A . n A 1 74 SER 74 74 ? ? ? A . n A 1 75 TRP 75 75 ? ? ? A . n A 1 76 CYS 76 76 ? ? ? A . n A 1 77 TRP 77 77 ? ? ? A . n A 1 78 ALA 78 78 ? ? ? A . n A 1 79 LEU 79 79 ? ? ? A . n A 1 80 ALA 80 80 ? ? ? A . n A 1 81 LEU 81 81 ? ? ? A . n A 1 82 LEU 82 82 ? ? ? A . n A 1 83 TRP 83 83 ? ? ? A . n A 1 84 LEU 84 84 ? ? ? A . n A 1 85 ALA 85 85 ? ? ? A . n A 1 86 VAL 86 86 ? ? ? A . n A 1 87 VAL 87 87 ? ? ? A . n A 1 88 PRO 88 88 ? ? ? A . n A 1 89 GLY 89 89 ? ? ? A . n A 1 90 TRP 90 90 ? ? ? A . n A 1 91 SER 91 91 ? ? ? A . n A 1 92 ARG 92 92 ? ? ? A . n A 1 93 VAL 93 93 ? ? ? A . n A 1 94 SER 94 94 ? ? ? A . n A 1 95 GLY 95 95 ? ? ? A . n A 1 96 ILE 96 96 ? ? ? A . n A 1 97 PRO 97 97 ? ? ? A . n A 1 98 SER 98 98 ? ? ? A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 CYS 126 126 126 CYS CYS A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 MSE 135 135 135 MSE MSE A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 TRP 151 151 ? ? ? A . n A 1 152 GLU 152 152 ? ? ? A . n A 1 153 PHE 153 153 ? ? ? A . n A 1 154 LYS 154 154 ? ? ? A . n A 1 155 TYR 155 155 ? ? ? A . n A 1 156 GLY 156 156 ? ? ? A . n A 1 157 ASP 157 157 ? ? ? A . n A 1 158 LEU 158 158 ? ? ? A . n A 1 159 LEU 159 159 ? ? ? A . n A 1 160 GLY 160 160 ? ? ? A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 MSE 165 165 165 MSE MSE A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 ARG 172 172 172 ARG ARG A . n A 1 173 SER 173 173 173 SER SER A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 TYR 180 180 180 TYR TYR A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 MSE 182 182 182 MSE MSE A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 PHE 188 188 188 PHE PHE A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 ASN 192 192 192 ASN ASN A . n A 1 193 CYS 193 193 193 CYS CYS A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 PHE 195 195 195 PHE PHE A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 HIS 197 197 197 HIS HIS A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 MSE 202 202 202 MSE MSE A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 CYS 208 208 208 CYS CYS A . n A 1 209 ASN 209 209 209 ASN ASN A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 CYS 214 214 214 CYS CYS A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 PHE 216 216 216 PHE PHE A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 ASP 220 220 220 ASP ASP A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 HIS 223 223 223 HIS HIS A . n A 1 224 TRP 224 224 224 TRP TRP A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 ASN 227 227 227 ASN ASN A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 THR 235 235 235 THR THR A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 MSE 240 240 240 MSE MSE A . n A 1 241 PHE 241 241 241 PHE PHE A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 GLN 243 243 243 GLN GLN A . n A 1 244 MSE 244 244 244 MSE MSE A . n A 1 245 ALA 245 245 245 ALA ALA A . n A 1 246 LYS 246 246 246 LYS LYS A . n A 1 247 TRP 247 247 247 TRP TRP A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 LYS 249 249 249 LYS LYS A . n A 1 250 GLN 250 250 250 GLN GLN A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 ASN 252 252 252 ASN ASN A . n A 1 253 GLU 253 253 253 GLU GLU A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 TYR 257 257 257 TYR TYR A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 THR 260 260 260 THR THR A . n A 1 261 TRP 261 261 261 TRP TRP A . n A 1 262 ASN 262 262 262 ASN ASN A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 ALA 265 265 265 ALA ALA A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 PRO 267 267 267 PRO PRO A . n A 1 268 GLU 268 268 268 GLU GLU A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 THR 273 273 273 THR THR A . n A 1 274 TRP 274 274 274 TRP TRP A . n A 1 275 PHE 275 275 275 PHE PHE A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 SER 277 277 277 SER SER A . n A 1 278 TYR 278 278 278 TYR TYR A . n A 1 279 ASP 279 279 279 ASP ASP A . n A 1 280 CYS 280 280 280 CYS CYS A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 PHE 283 283 283 PHE PHE A . n A 1 284 VAL 284 284 284 VAL VAL A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 ARG 286 286 286 ARG ARG A . n A 1 287 THR 287 287 287 THR THR A . n A 1 288 PHE 288 288 288 PHE PHE A . n A 1 289 ASN 289 289 289 ASN ASN A . n A 1 290 LYS 290 290 290 LYS LYS A . n A 1 291 LEU 291 291 291 LEU LEU A . n A 1 292 ALA 292 292 292 ALA ALA A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 GLU 297 297 297 GLU GLU A . n A 1 298 PHE 298 298 298 PHE PHE A . n A 1 299 LYS 299 299 299 LYS LYS A . n A 1 300 ASN 300 300 300 ASN ASN A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 GLU 302 302 302 GLU GLU A . n A 1 303 THR 303 303 303 THR THR A . n A 1 304 ASN 304 304 304 ASN ASN A . n A 1 305 TYR 305 305 305 TYR TYR A . n A 1 306 THR 306 306 306 THR THR A . n A 1 307 ARG 307 307 307 ARG ARG A . n A 1 308 ILE 308 308 308 ILE ILE A . n A 1 309 PHE 309 309 309 PHE PHE A . n A 1 310 LEU 310 310 310 LEU LEU A . n A 1 311 TYR 311 311 311 TYR TYR A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 GLY 313 313 313 GLY GLY A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 PRO 315 315 315 PRO PRO A . n A 1 316 THR 316 316 316 THR THR A . n A 1 317 TYR 317 317 317 TYR TYR A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 GLY 319 319 319 GLY GLY A . n A 1 320 ASN 320 320 320 ASN ASN A . n A 1 321 GLU 321 321 321 GLU GLU A . n A 1 322 THR 322 322 322 THR THR A . n A 1 323 SER 323 323 323 SER SER A . n A 1 324 VAL 324 324 324 VAL VAL A . n A 1 325 PHE 325 325 325 PHE PHE A . n A 1 326 GLY 326 326 326 GLY GLY A . n A 1 327 PRO 327 327 327 PRO PRO A . n A 1 328 THR 328 328 328 THR THR A . n A 1 329 GLY 329 329 329 GLY GLY A . n A 1 330 ASN 330 330 330 ASN ASN A . n A 1 331 LYS 331 331 331 LYS LYS A . n A 1 332 THR 332 332 332 THR THR A . n A 1 333 LEU 333 333 333 LEU LEU A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 LEU 335 335 335 LEU LEU A . n A 1 336 ALA 336 336 336 ALA ALA A . n A 1 337 ILE 337 337 337 ILE ILE A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 ARG 339 339 339 ARG ARG A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 TYR 341 341 341 TYR TYR A . n A 1 342 TYR 342 342 342 TYR TYR A . n A 1 343 PRO 343 343 343 PRO PRO A . n A 1 344 PHE 344 344 344 PHE PHE A . n A 1 345 LYS 345 345 345 LYS LYS A . n A 1 346 PRO 346 346 346 PRO PRO A . n A 1 347 HIS 347 347 ? ? ? A . n A 1 348 LEU 348 348 ? ? ? A . n A 1 349 PRO 349 349 ? ? ? A . n A 1 350 THR 350 350 ? ? ? A . n A 1 351 LYS 351 351 ? ? ? A . n A 1 352 GLU 352 352 ? ? ? A . n A 1 353 PHE 353 353 353 PHE PHE A . n A 1 354 LEU 354 354 354 LEU LEU A . n A 1 355 LEU 355 355 355 LEU LEU A . n A 1 356 SER 356 356 356 SER SER A . n A 1 357 LEU 357 357 357 LEU LEU A . n A 1 358 LEU 358 358 358 LEU LEU A . n A 1 359 GLN 359 359 359 GLN GLN A . n A 1 360 ILE 360 360 360 ILE ILE A . n A 1 361 PHE 361 361 361 PHE PHE A . n A 1 362 ASP 362 362 362 ASP ASP A . n A 1 363 ALA 363 363 363 ALA ALA A . n A 1 364 VAL 364 364 364 VAL VAL A . n A 1 365 ILE 365 365 365 ILE ILE A . n A 1 366 VAL 366 366 366 VAL VAL A . n A 1 367 HIS 367 367 367 HIS HIS A . n A 1 368 LYS 368 368 368 LYS LYS A . n A 1 369 GLN 369 369 369 GLN GLN A . n A 1 370 PHE 370 370 370 PHE PHE A . n A 1 371 TYR 371 371 371 TYR TYR A . n A 1 372 LEU 372 372 372 LEU LEU A . n A 1 373 PHE 373 373 373 PHE PHE A . n A 1 374 TYR 374 374 374 TYR TYR A . n A 1 375 ASN 375 375 375 ASN ASN A . n A 1 376 PHE 376 376 376 PHE PHE A . n A 1 377 GLU 377 377 377 GLU GLU A . n A 1 378 TYR 378 378 378 TYR TYR A . n A 1 379 TRP 379 379 379 TRP TRP A . n A 1 380 PHE 380 380 380 PHE PHE A . n A 1 381 LEU 381 381 381 LEU LEU A . n A 1 382 PRO 382 382 382 PRO PRO A . n A 1 383 MSE 383 383 383 MSE MSE A . n A 1 384 LYS 384 384 384 LYS LYS A . n A 1 385 PHE 385 385 385 PHE PHE A . n A 1 386 PRO 386 386 386 PRO PRO A . n A 1 387 PHE 387 387 387 PHE PHE A . n A 1 388 ILE 388 388 388 ILE ILE A . n A 1 389 LYS 389 389 389 LYS LYS A . n A 1 390 ILE 390 390 390 ILE ILE A . n A 1 391 THR 391 391 391 THR THR A . n A 1 392 TYR 392 392 392 TYR TYR A . n A 1 393 GLU 393 393 393 GLU GLU A . n A 1 394 GLU 394 394 394 GLU GLU A . n A 1 395 ILE 395 395 395 ILE ILE A . n A 1 396 PRO 396 396 396 PRO PRO A . n A 1 397 LEU 397 397 397 LEU LEU A . n A 1 398 PRO 398 398 398 PRO PRO A . n A 1 399 ILE 399 399 399 ILE ILE A . n A 1 400 ARG 400 400 ? ? ? A . n A 1 401 ASN 401 401 ? ? ? A . n A 1 402 LYS 402 402 ? ? ? A . n A 1 403 THR 403 403 ? ? ? A . n A 1 404 LEU 404 404 ? ? ? A . n A 1 405 SER 405 405 ? ? ? A . n A 1 406 GLY 406 406 ? ? ? A . n A 1 407 LEU 407 407 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 501 501 NAG NAG A . E 4 NAG 1 507 801 NAG NAG A . F 5 HOH 1 601 3 HOH HOH A . F 5 HOH 2 602 1 HOH HOH A . F 5 HOH 3 603 6 HOH HOH A . F 5 HOH 4 604 21 HOH HOH A . F 5 HOH 5 605 20 HOH HOH A . F 5 HOH 6 606 34 HOH HOH A . F 5 HOH 7 607 12 HOH HOH A . F 5 HOH 8 608 19 HOH HOH A . F 5 HOH 9 609 14 HOH HOH A . F 5 HOH 10 610 31 HOH HOH A . F 5 HOH 11 611 26 HOH HOH A . F 5 HOH 12 612 18 HOH HOH A . F 5 HOH 13 613 13 HOH HOH A . F 5 HOH 14 614 5 HOH HOH A . F 5 HOH 15 615 30 HOH HOH A . F 5 HOH 16 616 15 HOH HOH A . F 5 HOH 17 617 9 HOH HOH A . F 5 HOH 18 618 10 HOH HOH A . F 5 HOH 19 619 17 HOH HOH A . F 5 HOH 20 620 22 HOH HOH A . F 5 HOH 21 621 35 HOH HOH A . F 5 HOH 22 622 4 HOH HOH A . F 5 HOH 23 623 27 HOH HOH A . F 5 HOH 24 624 7 HOH HOH A . F 5 HOH 25 625 25 HOH HOH A . F 5 HOH 26 626 2 HOH HOH A . F 5 HOH 27 627 28 HOH HOH A . F 5 HOH 28 628 8 HOH HOH A . F 5 HOH 29 629 24 HOH HOH A . F 5 HOH 30 630 33 HOH HOH A . F 5 HOH 31 631 32 HOH HOH A . F 5 HOH 32 632 29 HOH HOH A . F 5 HOH 33 633 16 HOH HOH A . F 5 HOH 34 634 23 HOH HOH A . F 5 HOH 35 635 11 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 135 A MSE 135 ? MET 'modified residue' 2 A MSE 165 A MSE 165 ? MET 'modified residue' 3 A MSE 182 A MSE 182 ? MET 'modified residue' 4 A MSE 202 A MSE 202 ? MET 'modified residue' 5 A MSE 240 A MSE 240 ? MET 'modified residue' 6 A MSE 244 A MSE 244 ? MET 'modified residue' 7 A MSE 383 A MSE 383 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2480 ? 1 MORE 32 ? 1 'SSA (A^2)' 14650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 634 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-04-22 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2022-09-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Database references' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' pdbx_struct_special_symmetry 14 2 'Structure model' refine 15 2 'Structure model' struct_asym 16 2 'Structure model' struct_conn 17 2 'Structure model' struct_site 18 2 'Structure model' struct_site_gen 19 3 'Structure model' chem_comp 20 3 'Structure model' citation 21 3 'Structure model' citation_author 22 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 16 2 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 17 2 'Structure model' '_refine.pdbx_diffrn_id' 18 2 'Structure model' '_struct_conn.pdbx_role' 19 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 3 'Structure model' '_chem_comp.pdbx_synonyms' 26 3 'Structure model' '_citation.country' 27 3 'Structure model' '_citation.journal_abbrev' 28 3 'Structure model' '_citation.journal_id_CSD' 29 3 'Structure model' '_citation.journal_id_ISSN' 30 3 'Structure model' '_citation.journal_volume' 31 3 'Structure model' '_citation.page_first' 32 3 'Structure model' '_citation.page_last' 33 3 'Structure model' '_citation.pdbx_database_id_DOI' 34 3 'Structure model' '_citation.pdbx_database_id_PubMed' 35 3 'Structure model' '_citation.title' 36 3 'Structure model' '_citation.year' 37 3 'Structure model' '_database_2.pdbx_DOI' 38 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 253 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 601 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 102 ? ? -45.92 -72.50 2 1 GLN A 189 ? ? 74.01 174.16 3 1 CYS A 208 ? ? -116.99 64.05 4 1 GLU A 226 ? ? -63.19 -71.85 5 1 ASP A 279 ? ? -135.25 -157.01 6 1 ILE A 365 ? ? -92.36 -61.52 7 1 PHE A 385 ? ? 58.26 -145.69 8 1 PHE A 387 ? ? 63.04 -79.92 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 635 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.34 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 99 ? CG ? A ARG 99 CG 2 1 Y 1 A ARG 99 ? CD ? A ARG 99 CD 3 1 Y 1 A ARG 99 ? NE ? A ARG 99 NE 4 1 Y 1 A ARG 99 ? CZ ? A ARG 99 CZ 5 1 Y 1 A ARG 99 ? NH1 ? A ARG 99 NH1 6 1 Y 1 A ARG 99 ? NH2 ? A ARG 99 NH2 7 1 Y 1 A ARG 100 ? CG ? A ARG 100 CG 8 1 Y 1 A ARG 100 ? CD ? A ARG 100 CD 9 1 Y 1 A ARG 100 ? NE ? A ARG 100 NE 10 1 Y 1 A ARG 100 ? CZ ? A ARG 100 CZ 11 1 Y 1 A ARG 100 ? NH1 ? A ARG 100 NH1 12 1 Y 1 A ARG 100 ? NH2 ? A ARG 100 NH2 13 1 Y 1 A HIS 101 ? CG ? A HIS 101 CG 14 1 Y 1 A HIS 101 ? ND1 ? A HIS 101 ND1 15 1 Y 1 A HIS 101 ? CD2 ? A HIS 101 CD2 16 1 Y 1 A HIS 101 ? CE1 ? A HIS 101 CE1 17 1 Y 1 A HIS 101 ? NE2 ? A HIS 101 NE2 18 1 Y 1 A TRP 102 ? CG ? A TRP 102 CG 19 1 Y 1 A TRP 102 ? CD1 ? A TRP 102 CD1 20 1 Y 1 A TRP 102 ? CD2 ? A TRP 102 CD2 21 1 Y 1 A TRP 102 ? NE1 ? A TRP 102 NE1 22 1 Y 1 A TRP 102 ? CE2 ? A TRP 102 CE2 23 1 Y 1 A TRP 102 ? CE3 ? A TRP 102 CE3 24 1 Y 1 A TRP 102 ? CZ2 ? A TRP 102 CZ2 25 1 Y 1 A TRP 102 ? CZ3 ? A TRP 102 CZ3 26 1 Y 1 A TRP 102 ? CH2 ? A TRP 102 CH2 27 1 Y 1 A LYS 114 ? CG ? A LYS 114 CG 28 1 Y 1 A LYS 114 ? CD ? A LYS 114 CD 29 1 Y 1 A LYS 114 ? CE ? A LYS 114 CE 30 1 Y 1 A LYS 114 ? NZ ? A LYS 114 NZ 31 1 Y 1 A TYR 123 ? CG ? A TYR 123 CG 32 1 Y 1 A TYR 123 ? CD1 ? A TYR 123 CD1 33 1 Y 1 A TYR 123 ? CD2 ? A TYR 123 CD2 34 1 Y 1 A TYR 123 ? CE1 ? A TYR 123 CE1 35 1 Y 1 A TYR 123 ? CE2 ? A TYR 123 CE2 36 1 Y 1 A TYR 123 ? CZ ? A TYR 123 CZ 37 1 Y 1 A TYR 123 ? OH ? A TYR 123 OH 38 1 Y 1 A HIS 161 ? CG ? A HIS 161 CG 39 1 Y 1 A HIS 161 ? ND1 ? A HIS 161 ND1 40 1 Y 1 A HIS 161 ? CD2 ? A HIS 161 CD2 41 1 Y 1 A HIS 161 ? CE1 ? A HIS 161 CE1 42 1 Y 1 A HIS 161 ? NE2 ? A HIS 161 NE2 43 1 Y 1 A LEU 162 ? CG ? A LEU 162 CG 44 1 Y 1 A LEU 162 ? CD1 ? A LEU 162 CD1 45 1 Y 1 A LEU 162 ? CD2 ? A LEU 162 CD2 46 1 Y 1 A LYS 163 ? CG ? A LYS 163 CG 47 1 Y 1 A LYS 163 ? CD ? A LYS 163 CD 48 1 Y 1 A LYS 163 ? CE ? A LYS 163 CE 49 1 Y 1 A LYS 163 ? NZ ? A LYS 163 NZ 50 1 Y 1 A GLU 226 ? CG ? A GLU 226 CG 51 1 Y 1 A GLU 226 ? CD ? A GLU 226 CD 52 1 Y 1 A GLU 226 ? OE1 ? A GLU 226 OE1 53 1 Y 1 A GLU 226 ? OE2 ? A GLU 226 OE2 54 1 Y 1 A LYS 269 ? CG ? A LYS 269 CG 55 1 Y 1 A LYS 269 ? CD ? A LYS 269 CD 56 1 Y 1 A LYS 269 ? CE ? A LYS 269 CE 57 1 Y 1 A LYS 269 ? NZ ? A LYS 269 NZ 58 1 Y 1 A THR 328 ? OG1 ? A THR 328 OG1 59 1 Y 1 A THR 328 ? CG2 ? A THR 328 CG2 60 1 Y 1 A PHE 385 ? CG ? A PHE 385 CG 61 1 Y 1 A PHE 385 ? CD1 ? A PHE 385 CD1 62 1 Y 1 A PHE 385 ? CD2 ? A PHE 385 CD2 63 1 Y 1 A PHE 385 ? CE1 ? A PHE 385 CE1 64 1 Y 1 A PHE 385 ? CE2 ? A PHE 385 CE2 65 1 Y 1 A PHE 385 ? CZ ? A PHE 385 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A ARG 6 ? A ARG 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A GLY 8 ? A GLY 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A SER 10 ? A SER 10 11 1 Y 1 A SER 11 ? A SER 11 12 1 Y 1 A GLY 12 ? A GLY 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A ASP 14 ? A ASP 14 15 1 Y 1 A ALA 15 ? A ALA 15 16 1 Y 1 A GLN 16 ? A GLN 16 17 1 Y 1 A GLY 17 ? A GLY 17 18 1 Y 1 A GLN 18 ? A GLN 18 19 1 Y 1 A GLY 19 ? A GLY 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A PRO 21 ? A PRO 21 22 1 Y 1 A ARG 22 ? A ARG 22 23 1 Y 1 A PRO 23 ? A PRO 23 24 1 Y 1 A GLY 24 ? A GLY 24 25 1 Y 1 A LEU 25 ? A LEU 25 26 1 Y 1 A ALA 26 ? A ALA 26 27 1 Y 1 A ALA 27 ? A ALA 27 28 1 Y 1 A PRO 28 ? A PRO 28 29 1 Y 1 A ARG 29 ? A ARG 29 30 1 Y 1 A MSE 30 ? A MSE 30 31 1 Y 1 A LEU 31 ? A LEU 31 32 1 Y 1 A LEU 32 ? A LEU 32 33 1 Y 1 A PRO 33 ? A PRO 33 34 1 Y 1 A PRO 34 ? A PRO 34 35 1 Y 1 A ALA 35 ? A ALA 35 36 1 Y 1 A SER 36 ? A SER 36 37 1 Y 1 A GLN 37 ? A GLN 37 38 1 Y 1 A ALA 38 ? A ALA 38 39 1 Y 1 A SER 39 ? A SER 39 40 1 Y 1 A ARG 40 ? A ARG 40 41 1 Y 1 A GLY 41 ? A GLY 41 42 1 Y 1 A SER 42 ? A SER 42 43 1 Y 1 A GLY 43 ? A GLY 43 44 1 Y 1 A SER 44 ? A SER 44 45 1 Y 1 A THR 45 ? A THR 45 46 1 Y 1 A GLY 46 ? A GLY 46 47 1 Y 1 A CYS 47 ? A CYS 47 48 1 Y 1 A SER 48 ? A SER 48 49 1 Y 1 A LEU 49 ? A LEU 49 50 1 Y 1 A MSE 50 ? A MSE 50 51 1 Y 1 A ALA 51 ? A ALA 51 52 1 Y 1 A GLN 52 ? A GLN 52 53 1 Y 1 A GLU 53 ? A GLU 53 54 1 Y 1 A VAL 54 ? A VAL 54 55 1 Y 1 A ASP 55 ? A ASP 55 56 1 Y 1 A THR 56 ? A THR 56 57 1 Y 1 A ALA 57 ? A ALA 57 58 1 Y 1 A GLN 58 ? A GLN 58 59 1 Y 1 A GLY 59 ? A GLY 59 60 1 Y 1 A ALA 60 ? A ALA 60 61 1 Y 1 A GLU 61 ? A GLU 61 62 1 Y 1 A MSE 62 ? A MSE 62 63 1 Y 1 A ARG 63 ? A ARG 63 64 1 Y 1 A ARG 64 ? A ARG 64 65 1 Y 1 A GLY 65 ? A GLY 65 66 1 Y 1 A ALA 66 ? A ALA 66 67 1 Y 1 A GLY 67 ? A GLY 67 68 1 Y 1 A ALA 68 ? A ALA 68 69 1 Y 1 A ALA 69 ? A ALA 69 70 1 Y 1 A ARG 70 ? A ARG 70 71 1 Y 1 A GLY 71 ? A GLY 71 72 1 Y 1 A ARG 72 ? A ARG 72 73 1 Y 1 A ALA 73 ? A ALA 73 74 1 Y 1 A SER 74 ? A SER 74 75 1 Y 1 A TRP 75 ? A TRP 75 76 1 Y 1 A CYS 76 ? A CYS 76 77 1 Y 1 A TRP 77 ? A TRP 77 78 1 Y 1 A ALA 78 ? A ALA 78 79 1 Y 1 A LEU 79 ? A LEU 79 80 1 Y 1 A ALA 80 ? A ALA 80 81 1 Y 1 A LEU 81 ? A LEU 81 82 1 Y 1 A LEU 82 ? A LEU 82 83 1 Y 1 A TRP 83 ? A TRP 83 84 1 Y 1 A LEU 84 ? A LEU 84 85 1 Y 1 A ALA 85 ? A ALA 85 86 1 Y 1 A VAL 86 ? A VAL 86 87 1 Y 1 A VAL 87 ? A VAL 87 88 1 Y 1 A PRO 88 ? A PRO 88 89 1 Y 1 A GLY 89 ? A GLY 89 90 1 Y 1 A TRP 90 ? A TRP 90 91 1 Y 1 A SER 91 ? A SER 91 92 1 Y 1 A ARG 92 ? A ARG 92 93 1 Y 1 A VAL 93 ? A VAL 93 94 1 Y 1 A SER 94 ? A SER 94 95 1 Y 1 A GLY 95 ? A GLY 95 96 1 Y 1 A ILE 96 ? A ILE 96 97 1 Y 1 A PRO 97 ? A PRO 97 98 1 Y 1 A SER 98 ? A SER 98 99 1 Y 1 A TRP 151 ? A TRP 151 100 1 Y 1 A GLU 152 ? A GLU 152 101 1 Y 1 A PHE 153 ? A PHE 153 102 1 Y 1 A LYS 154 ? A LYS 154 103 1 Y 1 A TYR 155 ? A TYR 155 104 1 Y 1 A GLY 156 ? A GLY 156 105 1 Y 1 A ASP 157 ? A ASP 157 106 1 Y 1 A LEU 158 ? A LEU 158 107 1 Y 1 A LEU 159 ? A LEU 159 108 1 Y 1 A GLY 160 ? A GLY 160 109 1 Y 1 A HIS 347 ? A HIS 347 110 1 Y 1 A LEU 348 ? A LEU 348 111 1 Y 1 A PRO 349 ? A PRO 349 112 1 Y 1 A THR 350 ? A THR 350 113 1 Y 1 A LYS 351 ? A LYS 351 114 1 Y 1 A GLU 352 ? A GLU 352 115 1 Y 1 A ARG 400 ? A ARG 400 116 1 Y 1 A ASN 401 ? A ASN 401 117 1 Y 1 A LYS 402 ? A LYS 402 118 1 Y 1 A THR 403 ? A THR 403 119 1 Y 1 A LEU 404 ? A LEU 404 120 1 Y 1 A SER 405 ? A SER 405 121 1 Y 1 A GLY 406 ? A GLY 406 122 1 Y 1 A LEU 407 ? A LEU 407 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 601 n B 2 NAG 2 B NAG 2 A NAG 602 n C 3 NAG 1 C NAG 1 A NAG 701 n C 3 NAG 2 C NAG 2 A NAG 702 n C 3 BMA 3 C BMA 3 A BMA 703 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? 4 3 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 3 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #