data_6RFM # _entry.id 6RFM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6RFM pdb_00006rfm 10.2210/pdb6rfm/pdb WWPDB D_1292101850 ? ? BMRB 34393 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Bordetella pertussis adenylate cyclase toxin transmembrane segment 411-490 in DPC micelles' _pdbx_database_related.db_id 34393 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6RFM _pdbx_database_status.recvd_initial_deposition_date 2019-04-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Masin, J.' 1 ? 'Bumba, L.' 2 ? 'Veverka, V.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biochim Biophys Acta Biomembr' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1879-2642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1862 _citation.language ? _citation.page_first 183310 _citation.page_last 183310 _citation.title ;Negative charge of the AC-to-Hly linking segment modulates calcium-dependent membrane activities of Bordetella adenylate cyclase toxin. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbamem.2020.183310 _citation.pdbx_database_id_PubMed 32333856 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sukova, A.' 1 ? primary 'Bumba, L.' 2 ? primary 'Srb, P.' 3 ? primary 'Veverka, V.' 4 ? primary 'Stanek, O.' 5 ? primary 'Holubova, J.' 6 ? primary 'Chmelik, J.' 7 ? primary 'Fiser, R.' 8 ? primary 'Sebo, P.' 9 ? primary 'Masin, J.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Bifunctional hemolysin/adenylate cyclase' _entity.formula_weight 8226.117 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 4.6.1.1 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name AC-HLY,ACT,Cyclolysin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIALMTQFGRAGS _entity_poly.pdbx_seq_one_letter_code_can GSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIALMTQFGRAGS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ARG n 1 4 SER n 1 5 PHE n 1 6 SER n 1 7 LEU n 1 8 GLY n 1 9 GLU n 1 10 VAL n 1 11 SER n 1 12 ASP n 1 13 MET n 1 14 ALA n 1 15 ALA n 1 16 VAL n 1 17 GLU n 1 18 ALA n 1 19 ALA n 1 20 GLU n 1 21 LEU n 1 22 GLU n 1 23 MET n 1 24 THR n 1 25 ARG n 1 26 GLN n 1 27 VAL n 1 28 LEU n 1 29 HIS n 1 30 ALA n 1 31 GLY n 1 32 ALA n 1 33 ARG n 1 34 GLN n 1 35 ASP n 1 36 ASP n 1 37 ALA n 1 38 GLU n 1 39 PRO n 1 40 GLY n 1 41 VAL n 1 42 SER n 1 43 GLY n 1 44 ALA n 1 45 SER n 1 46 ALA n 1 47 HIS n 1 48 TRP n 1 49 GLY n 1 50 GLN n 1 51 ARG n 1 52 ALA n 1 53 LEU n 1 54 GLN n 1 55 GLY n 1 56 ALA n 1 57 GLN n 1 58 ALA n 1 59 VAL n 1 60 ALA n 1 61 ALA n 1 62 ALA n 1 63 GLN n 1 64 ARG n 1 65 LEU n 1 66 VAL n 1 67 HIS n 1 68 ALA n 1 69 ILE n 1 70 ALA n 1 71 LEU n 1 72 MET n 1 73 THR n 1 74 GLN n 1 75 PHE n 1 76 GLY n 1 77 ARG n 1 78 ALA n 1 79 GLY n 1 80 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cya, cyaA, BN118_0468' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella pertussis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 520 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYAA_BORP1 _struct_ref.pdbx_db_accession J7QLC0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIALMTQFGRAGS ; _struct_ref.pdbx_align_begin 411 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6RFM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 80 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession J7QLC0 _struct_ref_seq.db_align_beg 411 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 490 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 411 _struct_ref_seq.pdbx_auth_seq_align_end 490 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCACB' 1 isotropic 2 1 1 '3D CBCA(CO)NH' 1 isotropic 3 1 1 '3D HNCO' 1 isotropic 4 1 1 '3D HCCH-TOCSY' 1 isotropic 5 1 1 '3D 1H-13C NOESY' 1 isotropic 6 1 1 '3D 1H-15N NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 125 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label c1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '450 uM [U-13C; U-15N] Cya411-490, 25 mM sodium phosphate, 100 mM sodium chloride, 1 mM TCEP, 100 mM [U-2H] DPC, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label s1 _pdbx_nmr_sample_details.type micelle _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 850 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6RFM _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6RFM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 50 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6RFM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement YASARA ? YASARA 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' Sparky ? Goddard 4 processing TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RFM _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6RFM _struct.title 'Bordetella pertussis adenylate cyclase toxin transmembrane segment 411-490 in DPC micelles' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RFM _struct_keywords.text 'adenylate cyclase, Bordetella pertussis, membrane protein, calcium binding, TOXIN' _struct_keywords.pdbx_keywords TOXIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 6 ? ALA A 30 ? SER A 416 ALA A 440 1 ? 25 HELX_P HELX_P2 AA2 ARG A 33 ? ALA A 37 ? ARG A 443 ALA A 447 5 ? 5 HELX_P HELX_P3 AA3 HIS A 47 ? PHE A 75 ? HIS A 457 PHE A 485 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 6RFM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 411 411 GLY GLY A . n A 1 2 SER 2 412 412 SER SER A . n A 1 3 ARG 3 413 413 ARG ARG A . n A 1 4 SER 4 414 414 SER SER A . n A 1 5 PHE 5 415 415 PHE PHE A . n A 1 6 SER 6 416 416 SER SER A . n A 1 7 LEU 7 417 417 LEU LEU A . n A 1 8 GLY 8 418 418 GLY GLY A . n A 1 9 GLU 9 419 419 GLU GLU A . n A 1 10 VAL 10 420 420 VAL VAL A . n A 1 11 SER 11 421 421 SER SER A . n A 1 12 ASP 12 422 422 ASP ASP A . n A 1 13 MET 13 423 423 MET MET A . n A 1 14 ALA 14 424 424 ALA ALA A . n A 1 15 ALA 15 425 425 ALA ALA A . n A 1 16 VAL 16 426 426 VAL VAL A . n A 1 17 GLU 17 427 427 GLU GLU A . n A 1 18 ALA 18 428 428 ALA ALA A . n A 1 19 ALA 19 429 429 ALA ALA A . n A 1 20 GLU 20 430 430 GLU GLU A . n A 1 21 LEU 21 431 431 LEU LEU A . n A 1 22 GLU 22 432 432 GLU GLU A . n A 1 23 MET 23 433 433 MET MET A . n A 1 24 THR 24 434 434 THR THR A . n A 1 25 ARG 25 435 435 ARG ARG A . n A 1 26 GLN 26 436 436 GLN GLN A . n A 1 27 VAL 27 437 437 VAL VAL A . n A 1 28 LEU 28 438 438 LEU LEU A . n A 1 29 HIS 29 439 439 HIS HIS A . n A 1 30 ALA 30 440 440 ALA ALA A . n A 1 31 GLY 31 441 441 GLY GLY A . n A 1 32 ALA 32 442 442 ALA ALA A . n A 1 33 ARG 33 443 443 ARG ARG A . n A 1 34 GLN 34 444 444 GLN GLN A . n A 1 35 ASP 35 445 445 ASP ASP A . n A 1 36 ASP 36 446 446 ASP ASP A . n A 1 37 ALA 37 447 447 ALA ALA A . n A 1 38 GLU 38 448 448 GLU GLU A . n A 1 39 PRO 39 449 449 PRO PRO A . n A 1 40 GLY 40 450 450 GLY GLY A . n A 1 41 VAL 41 451 451 VAL VAL A . n A 1 42 SER 42 452 452 SER SER A . n A 1 43 GLY 43 453 453 GLY GLY A . n A 1 44 ALA 44 454 454 ALA ALA A . n A 1 45 SER 45 455 455 SER SER A . n A 1 46 ALA 46 456 456 ALA ALA A . n A 1 47 HIS 47 457 457 HIS HIS A . n A 1 48 TRP 48 458 458 TRP TRP A . n A 1 49 GLY 49 459 459 GLY GLY A . n A 1 50 GLN 50 460 460 GLN GLN A . n A 1 51 ARG 51 461 461 ARG ARG A . n A 1 52 ALA 52 462 462 ALA ALA A . n A 1 53 LEU 53 463 463 LEU LEU A . n A 1 54 GLN 54 464 464 GLN GLN A . n A 1 55 GLY 55 465 465 GLY GLY A . n A 1 56 ALA 56 466 466 ALA ALA A . n A 1 57 GLN 57 467 467 GLN GLN A . n A 1 58 ALA 58 468 468 ALA ALA A . n A 1 59 VAL 59 469 469 VAL VAL A . n A 1 60 ALA 60 470 470 ALA ALA A . n A 1 61 ALA 61 471 471 ALA ALA A . n A 1 62 ALA 62 472 472 ALA ALA A . n A 1 63 GLN 63 473 473 GLN GLN A . n A 1 64 ARG 64 474 474 ARG ARG A . n A 1 65 LEU 65 475 475 LEU LEU A . n A 1 66 VAL 66 476 476 VAL VAL A . n A 1 67 HIS 67 477 477 HIS HIS A . n A 1 68 ALA 68 478 478 ALA ALA A . n A 1 69 ILE 69 479 479 ILE ILE A . n A 1 70 ALA 70 480 480 ALA ALA A . n A 1 71 LEU 71 481 481 LEU LEU A . n A 1 72 MET 72 482 482 MET MET A . n A 1 73 THR 73 483 483 THR THR A . n A 1 74 GLN 74 484 484 GLN GLN A . n A 1 75 PHE 75 485 485 PHE PHE A . n A 1 76 GLY 76 486 486 GLY GLY A . n A 1 77 ARG 77 487 487 ARG ARG A . n A 1 78 ALA 78 488 488 ALA ALA A . n A 1 79 GLY 79 489 489 GLY GLY A . n A 1 80 SER 80 490 490 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 7980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-05-13 2 'Structure model' 1 1 2020-11-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' struct_ref # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_citation.country' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' 14 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 15 3 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Cya411-490 450 ? uM '[U-13C; U-15N]' 1 'sodium phosphate' 25 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 TCEP 1 ? mM 'natural abundance' 1 DPC 100 ? mM '[U-2H]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 24 H1 A GLY 411 ? ? HH21 A ARG 413 ? ? 1.20 2 36 H1 A GLY 411 ? ? HG A SER 416 ? ? 1.28 3 49 H1 A GLY 411 ? ? HG A SER 414 ? ? 1.20 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 23 NE A ARG 443 ? ? CZ A ARG 443 ? ? NH1 A ARG 443 ? ? 123.51 120.30 3.21 0.50 N 2 37 NE A ARG 443 ? ? CZ A ARG 443 ? ? NH1 A ARG 443 ? ? 123.59 120.30 3.29 0.50 N 3 50 C A GLU 448 ? ? N A PRO 449 ? ? CA A PRO 449 ? ? 128.33 119.30 9.03 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 414 ? ? 77.82 -162.89 2 1 ALA A 442 ? ? 68.73 160.17 3 1 HIS A 457 ? ? -105.75 -71.58 4 2 SER A 412 ? ? -73.96 40.11 5 2 ASP A 446 ? ? -87.82 33.06 6 3 ALA A 442 ? ? -146.15 29.19 7 3 ARG A 443 ? ? -132.57 -49.22 8 3 ASP A 446 ? ? -150.53 83.88 9 3 ALA A 447 ? ? -141.23 30.76 10 3 HIS A 457 ? ? -105.57 -76.89 11 3 ALA A 488 ? ? 56.63 11.72 12 4 ALA A 440 ? ? 48.98 -157.27 13 4 HIS A 457 ? ? -105.77 -76.77 14 5 SER A 416 ? ? -90.67 32.92 15 5 LEU A 417 ? ? 64.18 -42.68 16 5 ASP A 446 ? ? -74.73 24.75 17 5 ALA A 447 ? ? -92.73 43.74 18 5 ALA A 454 ? ? -152.21 -40.72 19 5 HIS A 457 ? ? -105.73 -76.79 20 6 GLN A 444 ? ? -152.82 15.74 21 6 HIS A 457 ? ? -104.98 -70.12 22 7 SER A 416 ? ? -89.39 33.74 23 7 LEU A 417 ? ? 63.49 -42.98 24 7 ASP A 446 ? ? -147.41 53.98 25 7 HIS A 457 ? ? -101.11 -67.92 26 8 ASP A 445 ? ? 64.13 -61.47 27 8 ASP A 446 ? ? -160.54 19.26 28 8 ALA A 447 ? ? -96.56 46.82 29 8 HIS A 457 ? ? -92.93 -67.93 30 9 LEU A 417 ? ? 63.73 -46.81 31 9 ALA A 440 ? ? -146.80 -44.57 32 9 ALA A 442 ? ? 52.44 70.16 33 9 ARG A 443 ? ? 61.06 -148.77 34 9 GLN A 444 ? ? -141.87 26.99 35 10 SER A 416 ? ? -91.99 32.81 36 10 LEU A 417 ? ? 63.18 -53.96 37 10 ARG A 443 ? ? 55.99 -162.89 38 10 GLN A 444 ? ? -142.12 41.50 39 10 ALA A 447 ? ? -98.79 43.42 40 10 ALA A 454 ? ? -77.04 39.94 41 10 HIS A 457 ? ? -105.30 -62.47 42 11 SER A 412 ? ? -157.32 -51.95 43 11 ALA A 454 ? ? 59.27 -156.09 44 11 ALA A 488 ? ? -78.74 28.38 45 12 LEU A 417 ? ? 63.90 -46.92 46 12 ALA A 440 ? ? -127.27 -138.55 47 13 SER A 416 ? ? -82.54 31.16 48 13 LEU A 417 ? ? 65.36 -47.38 49 13 SER A 452 ? ? 68.76 174.22 50 13 ALA A 456 ? ? 69.03 170.80 51 13 HIS A 457 ? ? -105.75 -76.72 52 13 ARG A 487 ? ? 35.35 58.72 53 13 ALA A 488 ? ? -67.93 63.67 54 14 HIS A 457 ? ? -105.82 -76.66 55 14 ARG A 487 ? ? 38.01 49.25 56 15 ALA A 442 ? ? -147.32 -136.75 57 15 ALA A 454 ? ? 62.61 179.20 58 15 HIS A 457 ? ? -105.76 -74.55 59 16 SER A 414 ? ? 64.63 178.41 60 16 SER A 416 ? ? -87.65 32.45 61 16 LEU A 417 ? ? 60.07 -62.49 62 16 ARG A 443 ? ? 53.64 -119.36 63 16 ALA A 447 ? ? -94.76 43.19 64 16 ALA A 454 ? ? 59.89 7.05 65 16 HIS A 457 ? ? -108.82 -62.77 66 17 SER A 416 ? ? -87.59 30.81 67 17 LEU A 417 ? ? 62.77 -46.43 68 17 GLN A 444 ? ? -88.71 40.21 69 17 ASP A 445 ? ? 59.54 -60.08 70 17 ASP A 446 ? ? -147.65 35.90 71 17 SER A 452 ? ? 68.44 152.49 72 17 ALA A 454 ? ? -170.35 -76.59 73 17 SER A 455 ? ? -157.67 -57.13 74 17 ALA A 456 ? ? 67.09 143.93 75 17 HIS A 457 ? ? -105.86 -74.58 76 18 SER A 416 ? ? -85.23 40.21 77 18 LEU A 417 ? ? 61.11 -57.53 78 18 ALA A 454 ? ? 61.70 -10.77 79 18 HIS A 457 ? ? -104.64 -75.11 80 19 SER A 412 ? ? 63.64 -174.14 81 19 ASP A 445 ? ? 65.97 -47.20 82 19 ASP A 446 ? ? -79.76 47.78 83 19 ALA A 447 ? ? -109.29 50.83 84 19 SER A 452 ? ? 57.40 -147.66 85 19 ALA A 456 ? ? 68.82 165.99 86 19 HIS A 457 ? ? -105.89 -76.76 87 20 SER A 412 ? ? 71.41 149.99 88 20 ASP A 446 ? ? -148.23 35.65 89 20 ALA A 488 ? ? -102.18 -155.68 90 21 PHE A 415 ? ? -153.58 -70.01 91 21 SER A 416 ? ? 47.19 12.93 92 21 LEU A 417 ? ? 63.94 -56.99 93 21 GLN A 444 ? ? -145.19 25.18 94 21 SER A 455 ? ? 50.61 -147.42 95 21 ALA A 456 ? ? 62.40 165.47 96 21 HIS A 457 ? ? -105.88 -76.76 97 22 ARG A 443 ? ? 52.57 -173.39 98 22 ASP A 445 ? ? 69.46 -58.61 99 22 ALA A 447 ? ? -95.65 51.71 100 22 HIS A 457 ? ? -105.76 -74.05 101 23 SER A 414 ? ? 58.03 -170.63 102 23 GLN A 444 ? ? -141.13 26.06 103 23 ASP A 446 ? ? -142.49 39.18 104 23 ALA A 456 ? ? 63.19 145.11 105 23 HIS A 457 ? ? -110.71 -76.79 106 24 SER A 414 ? ? 66.60 -48.66 107 24 ALA A 442 ? ? -160.58 103.69 108 24 ARG A 443 ? ? 56.06 -160.60 109 24 ASP A 445 ? ? 54.70 15.04 110 24 SER A 452 ? ? -149.92 -46.49 111 24 HIS A 457 ? ? -105.71 -62.20 112 25 SER A 416 ? ? 27.42 127.64 113 25 ASP A 446 ? ? -95.42 -62.84 114 25 ALA A 454 ? ? 54.19 19.85 115 25 HIS A 457 ? ? -105.74 -67.66 116 26 SER A 414 ? ? 61.56 -152.50 117 26 ALA A 454 ? ? -148.86 -48.95 118 26 ARG A 487 ? ? 38.45 52.89 119 27 SER A 412 ? ? 56.76 -153.21 120 27 SER A 416 ? ? 40.67 120.94 121 27 ALA A 440 ? ? 39.79 39.74 122 27 ASP A 446 ? ? -161.77 58.08 123 27 HIS A 457 ? ? -105.73 -62.90 124 28 SER A 416 ? ? 59.43 146.39 125 28 ASP A 446 ? ? -157.77 30.39 126 28 HIS A 457 ? ? -105.29 -72.26 127 29 ALA A 442 ? ? 67.46 160.38 128 29 GLN A 444 ? ? -140.54 23.06 129 29 ASP A 446 ? ? -150.43 84.80 130 29 SER A 452 ? ? 53.90 -141.92 131 29 ALA A 454 ? ? 55.78 -153.19 132 29 HIS A 457 ? ? -101.54 -76.73 133 30 SER A 412 ? ? -163.30 -53.10 134 30 SER A 416 ? ? -89.62 32.14 135 30 LEU A 417 ? ? 62.70 -53.21 136 30 ARG A 443 ? ? 59.21 -177.49 137 30 GLN A 444 ? ? -152.51 26.20 138 30 ALA A 447 ? ? -88.09 41.41 139 30 HIS A 457 ? ? -93.66 -68.72 140 30 ALA A 488 ? ? 63.34 -70.74 141 31 SER A 414 ? ? 66.46 -177.07 142 31 SER A 416 ? ? -91.68 33.67 143 31 LEU A 417 ? ? 64.66 -41.64 144 31 SER A 452 ? ? 55.68 -148.50 145 31 HIS A 457 ? ? -105.68 -60.58 146 31 ALA A 488 ? ? -152.22 85.84 147 32 ARG A 413 ? ? -143.07 -16.88 148 32 SER A 416 ? ? -95.51 35.78 149 32 LEU A 417 ? ? 63.18 -57.34 150 32 ALA A 454 ? ? 52.56 -154.51 151 32 SER A 455 ? ? 37.60 42.09 152 32 HIS A 457 ? ? -100.01 -76.86 153 33 ALA A 440 ? ? 46.57 -155.63 154 33 ARG A 443 ? ? 47.26 -128.25 155 33 ASP A 445 ? ? 62.63 -63.96 156 33 ALA A 447 ? ? 54.99 19.28 157 33 ALA A 454 ? ? 56.95 18.14 158 33 SER A 455 ? ? 62.96 178.87 159 33 HIS A 457 ? ? -91.69 -76.75 160 34 ARG A 413 ? ? -149.36 32.74 161 34 LEU A 417 ? ? 63.37 -46.79 162 34 ALA A 456 ? ? 64.28 160.36 163 34 HIS A 457 ? ? -105.72 -76.74 164 35 SER A 416 ? ? 50.49 -157.87 165 35 ALA A 442 ? ? -136.16 -112.17 166 35 ALA A 447 ? ? -117.03 53.87 167 35 ARG A 487 ? ? 53.53 8.08 168 36 SER A 414 ? ? 48.28 -113.13 169 36 ARG A 443 ? ? 64.72 -45.65 170 36 ASP A 446 ? ? -157.85 89.36 171 36 SER A 452 ? ? -104.22 40.12 172 36 ALA A 454 ? ? 65.53 -177.03 173 36 HIS A 457 ? ? -105.23 -75.03 174 36 ARG A 487 ? ? -141.07 -68.62 175 37 ARG A 413 ? ? 65.12 -173.90 176 37 SER A 414 ? ? -148.21 -42.47 177 37 GLN A 444 ? ? -97.75 35.74 178 37 ALA A 447 ? ? -77.56 35.73 179 37 SER A 455 ? ? 56.25 8.60 180 37 ARG A 487 ? ? 56.08 13.27 181 38 ARG A 413 ? ? 60.73 110.83 182 38 LEU A 417 ? ? 61.98 -64.55 183 38 ALA A 447 ? ? -90.42 44.28 184 38 HIS A 457 ? ? -105.61 -76.70 185 39 SER A 414 ? ? 72.23 -158.64 186 39 SER A 416 ? ? -115.36 50.42 187 39 LEU A 417 ? ? 62.26 -56.83 188 39 ALA A 442 ? ? -90.55 -151.74 189 39 ALA A 456 ? ? 65.99 165.16 190 40 PHE A 415 ? ? -159.35 -23.23 191 40 SER A 416 ? ? 65.48 135.52 192 40 ALA A 442 ? ? 71.46 121.06 193 40 ALA A 447 ? ? -142.98 34.02 194 41 SER A 414 ? ? 68.22 -34.16 195 41 ARG A 443 ? ? 46.57 -135.10 196 41 GLN A 444 ? ? -117.96 52.65 197 41 ASP A 445 ? ? 66.92 -65.92 198 41 ALA A 447 ? ? -107.57 57.52 199 41 SER A 452 ? ? -93.49 -157.92 200 41 HIS A 457 ? ? -100.66 -68.46 201 42 ARG A 443 ? ? 53.14 -127.74 202 42 GLN A 444 ? ? -159.99 27.77 203 42 SER A 452 ? ? -156.27 76.97 204 42 ALA A 454 ? ? 61.31 -9.74 205 42 ALA A 456 ? ? 61.66 121.01 206 42 HIS A 457 ? ? -109.88 -69.68 207 42 ALA A 488 ? ? 50.42 -128.42 208 43 SER A 414 ? ? 69.51 177.02 209 43 ALA A 440 ? ? -80.39 34.14 210 43 ASP A 445 ? ? 58.74 -67.03 211 43 ALA A 447 ? ? -85.25 44.94 212 43 SER A 452 ? ? -149.84 -59.59 213 43 HIS A 457 ? ? -105.76 -76.65 214 44 ALA A 440 ? ? -148.07 -158.44 215 44 GLN A 444 ? ? -162.83 24.92 216 44 HIS A 457 ? ? -105.66 -76.79 217 44 ARG A 487 ? ? 38.75 45.21 218 44 ALA A 488 ? ? -139.71 -157.30 219 45 ARG A 413 ? ? 67.24 171.53 220 45 SER A 414 ? ? 59.21 -160.05 221 45 SER A 416 ? ? -92.79 36.11 222 45 LEU A 417 ? ? 64.41 -47.81 223 45 ALA A 440 ? ? 50.65 -156.71 224 45 ASP A 446 ? ? -105.97 48.40 225 45 PRO A 449 ? ? -82.66 43.72 226 45 VAL A 451 ? ? -132.28 -38.30 227 45 SER A 452 ? ? -167.19 37.40 228 45 SER A 455 ? ? 64.54 -174.48 229 45 HIS A 457 ? ? -100.79 -73.40 230 45 ARG A 487 ? ? 46.96 29.38 231 46 SER A 414 ? ? 65.24 -179.65 232 46 SER A 416 ? ? -103.11 41.07 233 46 LEU A 417 ? ? 62.59 -54.96 234 46 ASP A 445 ? ? 66.47 -42.61 235 46 ALA A 447 ? ? -115.41 51.04 236 46 SER A 452 ? ? 60.64 -175.96 237 46 HIS A 457 ? ? -110.23 -79.24 238 47 SER A 412 ? ? 62.27 -177.17 239 47 SER A 416 ? ? 46.25 121.23 240 47 ASP A 445 ? ? 63.04 -40.63 241 47 ASP A 446 ? ? -74.48 42.23 242 47 ALA A 454 ? ? 58.10 -109.94 243 47 HIS A 457 ? ? -100.16 -76.32 244 47 ARG A 487 ? ? 46.66 28.67 245 48 SER A 414 ? ? 59.39 -178.88 246 48 LEU A 417 ? ? 63.80 -55.91 247 48 SER A 452 ? ? 57.28 -152.19 248 48 HIS A 457 ? ? -105.29 -76.76 249 49 ALA A 454 ? ? 67.47 157.48 250 49 HIS A 457 ? ? -99.98 -73.95 251 50 SER A 416 ? ? -100.11 41.04 252 50 LEU A 417 ? ? 63.25 -48.88 253 50 ARG A 443 ? ? 64.91 -29.89 254 50 GLU A 448 ? ? 19.27 72.66 255 50 HIS A 457 ? ? -93.55 -76.29 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #