HEADER LIGASE 02-MAY-19 6RLV TITLE TRYPANOSOMA BRUCEI SERYL-TRNA SYNTHETASE IN COMPLEX WITH 5'-O-(N-(L- TITLE 2 SERYL)-SULFAMOYL)N3-METHYLURIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SERYL-TRNA SYNTHETASE; COMPND 5 EC: 6.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI GAMBIENSE; SOURCE 3 ORGANISM_TAXID: 31285; SOURCE 4 GENE: TBGDAL_XI8110; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS COIL-COIL, BETA BARREL, TRNA SYNTHETASE, INHIBITOR, COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.DE GRAEF,S.V.STRELKOV,S.D.WEEKS REVDAT 4 24-JAN-24 6RLV 1 LINK REVDAT 3 04-MAR-20 6RLV 1 JRNL REVDAT 2 15-JAN-20 6RLV 1 JRNL REVDAT 1 08-JAN-20 6RLV 0 JRNL AUTH L.PANG,M.NAUTIYAL,S.DE GRAEF,B.GADAKH,V.ZORZINI,A.ECONOMOU, JRNL AUTH 2 S.V.STRELKOV,A.VAN AERSCHOT,S.D.WEEKS JRNL TITL STRUCTURAL INSIGHTS INTO THE BINDING OF NATURAL JRNL TITL 2 PYRIMIDINE-BASED INHIBITORS OF CLASS II AMINOACYL-TRNA JRNL TITL 3 SYNTHETASES. JRNL REF ACS CHEM.BIOL. V. 15 407 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 31869198 JRNL DOI 10.1021/ACSCHEMBIO.9B00887 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 116513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2336 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2331 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1852 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2289 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE : 0.1952 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 734 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93350 REMARK 3 B22 (A**2) : -0.93350 REMARK 3 B33 (A**2) : 1.86700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.100 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7272 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9826 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2570 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1259 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7272 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 963 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9255 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|136 - B|465 } REMARK 3 ORIGIN FOR THE GROUP (A): 58.6177 -56.5392 8.7918 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1718 REMARK 3 T33: 0.1590 T12: -0.0284 REMARK 3 T13: -0.0111 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.3405 L22: 0.4334 REMARK 3 L33: 0.5420 L12: 0.1304 REMARK 3 L13: -0.0170 L23: 0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0546 S13: 0.0291 REMARK 3 S21: -0.0421 S22: 0.0271 S23: 0.0487 REMARK 3 S31: -0.0502 S32: 0.0023 S33: -0.0103 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1 - A|135 } REMARK 3 ORIGIN FOR THE GROUP (A): 6.7380 -81.6161 22.2528 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.3698 REMARK 3 T33: 0.1901 T12: -0.0290 REMARK 3 T13: 0.0017 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.8492 L22: 0.0495 REMARK 3 L33: 1.9516 L12: 0.1638 REMARK 3 L13: 2.3246 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.4144 S13: -0.0505 REMARK 3 S21: 0.0575 S22: -0.0186 S23: -0.0296 REMARK 3 S31: -0.0779 S32: -0.1630 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|136 - A|465 } REMARK 3 ORIGIN FOR THE GROUP (A): 49.5980 -73.7745 32.0569 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.1529 REMARK 3 T33: 0.1441 T12: -0.0304 REMARK 3 T13: -0.0101 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.4480 L22: 0.2747 REMARK 3 L33: 0.6932 L12: 0.0846 REMARK 3 L13: 0.1962 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0563 S13: -0.0219 REMARK 3 S21: 0.0535 S22: -0.0176 S23: 0.0086 REMARK 3 S31: 0.0962 S32: -0.0979 S33: -0.0436 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|1 - B|135 } REMARK 3 ORIGIN FOR THE GROUP (A): 45.1039 -15.5738 19.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.3852 T22: 0.3061 REMARK 3 T33: 0.2432 T12: 0.1405 REMARK 3 T13: 0.0378 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 1.6735 REMARK 3 L33: 4.7386 L12: -0.9924 REMARK 3 L13: -1.7308 L23: 2.2782 REMARK 3 S TENSOR REMARK 3 S11: 0.2693 S12: 0.2296 S13: 0.0634 REMARK 3 S21: -0.1953 S22: -0.1292 S23: -0.0383 REMARK 3 S31: -0.7756 S32: -0.5673 S33: -0.1401 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 130.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 5 MM DTT, 5% (V/V) GLYCEROL WAS MIXED WITH REMARK 280 2.4 M SODIUM MALONATE PH 7.0, 100 MM BIS-TRIS PROPANE PH 7.0 IN REMARK 280 A 2:1 (V/V) RATIO. SUITABLE CRYSTALS WERE SOAKED WITH 2 MM 5'-O- REMARK 280 (N-(L-SERYL)-SULFAMOYL)N3-METHYLURIDINE IN THE CRYSTALLIZATION REMARK 280 SOLUTION CONTAINING ADDITIONAL 22% V/V GLYCEROL., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 88.83300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.28776 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.25567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 88.83300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.28776 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.25567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 88.83300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.28776 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.25567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 88.83300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 51.28776 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.25567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 88.83300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 51.28776 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.25567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 88.83300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 51.28776 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.25567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 102.57551 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 164.51133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 102.57551 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 164.51133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 102.57551 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 164.51133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 102.57551 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 164.51133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 102.57551 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 164.51133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 102.57551 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 164.51133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 255 REMARK 465 GLY A 256 REMARK 465 GLY A 299 REMARK 465 ALA A 300 REMARK 465 HIS A 301 REMARK 465 GLY A 302 REMARK 465 ARG A 303 REMARK 465 ASP A 304 REMARK 465 THR A 305 REMARK 465 GLN A 413 REMARK 465 ASN A 414 REMARK 465 ASN A 466 REMARK 465 ASN A 467 REMARK 465 ALA A 468 REMARK 465 GLN A 469 REMARK 465 ALA A 470 REMARK 465 GLU A 471 REMARK 465 GLY A 472 REMARK 465 THR A 473 REMARK 465 THR A 474 REMARK 465 PRO A 475 REMARK 465 ASP A 476 REMARK 465 LYS A 477 REMARK 465 GLY A 478 REMARK 465 GLU A 479 REMARK 465 ASP B 255 REMARK 465 GLY B 256 REMARK 465 GLY B 299 REMARK 465 ALA B 300 REMARK 465 HIS B 301 REMARK 465 GLY B 302 REMARK 465 ARG B 303 REMARK 465 ASP B 304 REMARK 465 THR B 305 REMARK 465 ASN B 466 REMARK 465 ASN B 467 REMARK 465 ALA B 468 REMARK 465 GLN B 469 REMARK 465 ALA B 470 REMARK 465 GLU B 471 REMARK 465 GLY B 472 REMARK 465 THR B 473 REMARK 465 THR B 474 REMARK 465 PRO B 475 REMARK 465 ASP B 476 REMARK 465 LYS B 477 REMARK 465 GLY B 478 REMARK 465 GLU B 479 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 60 CE NZ REMARK 470 LYS A 69 CD CE NZ REMARK 470 LYS A 92 CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 120 CE NZ REMARK 470 GLN A 123 CD OE1 NE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 LYS A 168 CD CE NZ REMARK 470 LYS A 185 CE NZ REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 LEU A 242 CG CD1 CD2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 ASP A 257 CG OD1 OD2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLN A 327 OE1 NE2 REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 67 CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 ASP B 74 CG OD1 OD2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 GLN B 98 CG CD OE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 GLN B 124 CG CD OE1 NE2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLU B 150 CD OE1 OE2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 LYS B 168 CE NZ REMARK 470 ARG B 233 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 241 CG CD OE1 NE2 REMARK 470 LEU B 242 CG CD1 CD2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 ASP B 257 CG OD1 OD2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLU B 280 CD OE1 OE2 REMARK 470 LYS B 282 CD CE NZ REMARK 470 ARG B 332 CD NE CZ NH1 NH2 REMARK 470 ARG B 408 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 443 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 2 -68.37 -109.11 REMARK 500 THR A 392 -126.21 39.60 REMARK 500 MET A 456 59.54 -140.89 REMARK 500 VAL B 2 -64.75 -99.65 REMARK 500 THR B 392 -123.05 36.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 379 OG REMARK 620 2 HOH A 859 O 156.5 REMARK 620 3 HOH A 885 O 102.9 100.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 384 OE2 REMARK 620 2 SER A 387 OG 87.1 REMARK 620 3 FZT A 507 O2S 91.9 93.7 REMARK 620 4 HOH A 732 O 92.1 92.2 173.1 REMARK 620 5 HOH A 880 O 173.4 86.5 90.1 86.5 REMARK 620 6 HOH A 890 O 94.2 177.8 88.0 86.0 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 847 O REMARK 620 2 HOH A 882 O 97.1 REMARK 620 3 ASN B 162 OD1 95.8 94.2 REMARK 620 4 THR B 164 OG1 77.3 167.2 75.1 REMARK 620 5 HOH B 871 O 166.9 71.3 91.3 115.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 379 OG REMARK 620 2 HOH B 843 O 143.0 REMARK 620 3 HOH B 869 O 103.7 113.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 384 OE2 REMARK 620 2 SER B 387 OG 87.7 REMARK 620 3 FZT B 510 O2S 88.9 93.9 REMARK 620 4 HOH B 619 O 87.6 90.0 174.7 REMARK 620 5 HOH B 758 O 176.2 88.5 90.8 92.9 REMARK 620 6 HOH B 877 O 86.6 169.6 94.8 81.0 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 407 O REMARK 620 2 THR B 410 O 88.8 REMARK 620 3 GLN B 413 O 107.3 93.2 REMARK 620 4 HOH B 692 O 166.7 93.0 85.7 REMARK 620 5 HOH B 888 O 84.0 83.9 168.3 83.1 REMARK 620 6 HOH B 898 O 88.9 170.5 96.3 87.2 86.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FZT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FZT B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HHY RELATED DB: PDB REMARK 900 RELATED ID: 6HHZ RELATED DB: PDB REMARK 900 RELATED ID: 6HI0 RELATED DB: PDB REMARK 900 RELATED ID: 6HHV RELATED DB: PDB REMARK 900 RELATED ID: 6HHW RELATED DB: PDB REMARK 900 RELATED ID: 6HHX RELATED DB: PDB REMARK 900 RELATED ID: 6HDZ RELATED DB: PDB REMARK 900 RELATED ID: 6HE1 RELATED DB: PDB REMARK 900 RELATED ID: 6HE3 RELATED DB: PDB DBREF 6RLV A 1 479 UNP D0A7P1 D0A7P1_TRYB9 1 479 DBREF 6RLV B 1 479 UNP D0A7P1 D0A7P1_TRYB9 1 479 SEQRES 1 A 479 MET VAL LEU ASP ILE GLN LEU PHE ARG ASP GLU THR GLY SEQRES 2 A 479 ALA ASN ILE ILE ARG GLU SER GLN ARG ARG ARG PHE ALA SEQRES 3 A 479 ASP PRO ASP ILE VAL ASP ALA ILE ILE GLU ALA ASP LYS SEQRES 4 A 479 LYS TRP ARG ARG THR GLN PHE LEU THR GLU ALA SER LYS SEQRES 5 A 479 LYS LEU ILE ASN ILE CYS SER LYS ALA VAL GLY ALA LYS SEQRES 6 A 479 LYS LYS ALA LYS GLU ALA ASP GLY ASP THR SER GLU ILE SEQRES 7 A 479 PRO PRO GLN VAL LYS GLU ALA TYR GLU ASN GLY THR LEU SEQRES 8 A 479 LYS GLY GLU GLN VAL GLU GLN LEU CYS VAL LEU GLN LEU SEQRES 9 A 479 LYS GLN LEU SER LYS ASP LEU SER ASP GLN VAL ALA GLY SEQRES 10 A 479 LEU ALA LYS GLU ALA GLN GLN LEU GLU GLU GLU ARG ASP SEQRES 11 A 479 LYS LEU MET LEU ASN VAL GLY ASN ILE LEU HIS GLU SER SEQRES 12 A 479 VAL PRO ILE ALA GLN ASP GLU GLU THR GLY ASN THR VAL SEQRES 13 A 479 VAL ARG THR PHE GLY ASN THR THR LYS ARG ALA LYS LEU SEQRES 14 A 479 ASN HIS VAL SER ILE MET GLU ARG LEU GLY MET MET ASP SEQRES 15 A 479 THR SER LYS ALA VAL THR SER MET ALA GLY GLY ARG SER SEQRES 16 A 479 TYR VAL LEU LYS GLY GLY LEU VAL GLN LEU GLN VAL ALA SEQRES 17 A 479 LEU VAL SER TYR SER LEU ASP PHE LEU VAL LYS ARG GLY SEQRES 18 A 479 TYR THR PRO PHE TYR PRO PRO PHE PHE LEU ASN ARG ASP SEQRES 19 A 479 VAL MET GLY GLU VAL ALA GLN LEU SER GLN PHE ASP GLU SEQRES 20 A 479 GLU LEU TYR GLN VAL SER GLY ASP GLY ASP LYS LYS TYR SEQRES 21 A 479 LEU ILE ALA THR SER GLU MET PRO ILE ALA ALA TYR HIS SEQRES 22 A 479 ARG GLY ARG TRP PHE THR GLU LEU LYS GLU PRO LEU LYS SEQRES 23 A 479 TYR ALA GLY MET SER THR CYS PHE ARG LYS GLU ALA GLY SEQRES 24 A 479 ALA HIS GLY ARG ASP THR LEU GLY ILE PHE ARG VAL HIS SEQRES 25 A 479 GLN PHE ASP LYS ILE GLU GLN PHE VAL VAL CYS SER PRO SEQRES 26 A 479 ARG GLN GLU GLU SER TRP ARG HIS LEU GLU ASP MET ILE SEQRES 27 A 479 THR THR SER GLU GLU PHE ASN LYS SER LEU GLY LEU PRO SEQRES 28 A 479 TYR ARG VAL VAL ASN ILE CYS SER GLY ALA LEU ASN ASN SEQRES 29 A 479 ALA ALA ALA LYS LYS TYR ASP LEU GLU ALA TRP PHE PRO SEQRES 30 A 479 ALA SER GLY ALA PHE ARG GLU LEU VAL SER CYS SER ASN SEQRES 31 A 479 CYS THR ASP TYR GLN SER GLN SER VAL ASN CYS ARG TYR SEQRES 32 A 479 GLY PRO ASN LEU ARG GLY THR ALA ALA GLN ASN VAL LYS SEQRES 33 A 479 GLU TYR CYS HIS MET LEU ASN GLY THR LEU CYS ALA ILE SEQRES 34 A 479 THR ARG THR MET CYS CYS ILE CYS GLU ASN TYR GLN THR SEQRES 35 A 479 GLU GLU GLY VAL VAL ILE PRO ASP VAL LEU ARG PRO TYR SEQRES 36 A 479 MET MET GLY ILE GLU MET ILE ARG PHE GLU ASN ASN ALA SEQRES 37 A 479 GLN ALA GLU GLY THR THR PRO ASP LYS GLY GLU SEQRES 1 B 479 MET VAL LEU ASP ILE GLN LEU PHE ARG ASP GLU THR GLY SEQRES 2 B 479 ALA ASN ILE ILE ARG GLU SER GLN ARG ARG ARG PHE ALA SEQRES 3 B 479 ASP PRO ASP ILE VAL ASP ALA ILE ILE GLU ALA ASP LYS SEQRES 4 B 479 LYS TRP ARG ARG THR GLN PHE LEU THR GLU ALA SER LYS SEQRES 5 B 479 LYS LEU ILE ASN ILE CYS SER LYS ALA VAL GLY ALA LYS SEQRES 6 B 479 LYS LYS ALA LYS GLU ALA ASP GLY ASP THR SER GLU ILE SEQRES 7 B 479 PRO PRO GLN VAL LYS GLU ALA TYR GLU ASN GLY THR LEU SEQRES 8 B 479 LYS GLY GLU GLN VAL GLU GLN LEU CYS VAL LEU GLN LEU SEQRES 9 B 479 LYS GLN LEU SER LYS ASP LEU SER ASP GLN VAL ALA GLY SEQRES 10 B 479 LEU ALA LYS GLU ALA GLN GLN LEU GLU GLU GLU ARG ASP SEQRES 11 B 479 LYS LEU MET LEU ASN VAL GLY ASN ILE LEU HIS GLU SER SEQRES 12 B 479 VAL PRO ILE ALA GLN ASP GLU GLU THR GLY ASN THR VAL SEQRES 13 B 479 VAL ARG THR PHE GLY ASN THR THR LYS ARG ALA LYS LEU SEQRES 14 B 479 ASN HIS VAL SER ILE MET GLU ARG LEU GLY MET MET ASP SEQRES 15 B 479 THR SER LYS ALA VAL THR SER MET ALA GLY GLY ARG SER SEQRES 16 B 479 TYR VAL LEU LYS GLY GLY LEU VAL GLN LEU GLN VAL ALA SEQRES 17 B 479 LEU VAL SER TYR SER LEU ASP PHE LEU VAL LYS ARG GLY SEQRES 18 B 479 TYR THR PRO PHE TYR PRO PRO PHE PHE LEU ASN ARG ASP SEQRES 19 B 479 VAL MET GLY GLU VAL ALA GLN LEU SER GLN PHE ASP GLU SEQRES 20 B 479 GLU LEU TYR GLN VAL SER GLY ASP GLY ASP LYS LYS TYR SEQRES 21 B 479 LEU ILE ALA THR SER GLU MET PRO ILE ALA ALA TYR HIS SEQRES 22 B 479 ARG GLY ARG TRP PHE THR GLU LEU LYS GLU PRO LEU LYS SEQRES 23 B 479 TYR ALA GLY MET SER THR CYS PHE ARG LYS GLU ALA GLY SEQRES 24 B 479 ALA HIS GLY ARG ASP THR LEU GLY ILE PHE ARG VAL HIS SEQRES 25 B 479 GLN PHE ASP LYS ILE GLU GLN PHE VAL VAL CYS SER PRO SEQRES 26 B 479 ARG GLN GLU GLU SER TRP ARG HIS LEU GLU ASP MET ILE SEQRES 27 B 479 THR THR SER GLU GLU PHE ASN LYS SER LEU GLY LEU PRO SEQRES 28 B 479 TYR ARG VAL VAL ASN ILE CYS SER GLY ALA LEU ASN ASN SEQRES 29 B 479 ALA ALA ALA LYS LYS TYR ASP LEU GLU ALA TRP PHE PRO SEQRES 30 B 479 ALA SER GLY ALA PHE ARG GLU LEU VAL SER CYS SER ASN SEQRES 31 B 479 CYS THR ASP TYR GLN SER GLN SER VAL ASN CYS ARG TYR SEQRES 32 B 479 GLY PRO ASN LEU ARG GLY THR ALA ALA GLN ASN VAL LYS SEQRES 33 B 479 GLU TYR CYS HIS MET LEU ASN GLY THR LEU CYS ALA ILE SEQRES 34 B 479 THR ARG THR MET CYS CYS ILE CYS GLU ASN TYR GLN THR SEQRES 35 B 479 GLU GLU GLY VAL VAL ILE PRO ASP VAL LEU ARG PRO TYR SEQRES 36 B 479 MET MET GLY ILE GLU MET ILE ARG PHE GLU ASN ASN ALA SEQRES 37 B 479 GLN ALA GLU GLY THR THR PRO ASP LYS GLY GLU HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET NA A 505 1 HET NA A 506 1 HET FZT A 507 28 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET NA B 506 1 HET NA B 507 1 HET NA B 508 1 HET NA B 509 1 HET FZT B 510 28 HET MLI B 511 7 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM FZT 5'-O-(N-(L-SERYL)-SULFAMOYL)N3-METHYLURIDINE HETNAM MLI MALONATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 7 NA 6(NA 1+) FORMUL 9 FZT 2(C13 H20 N4 O10 S) FORMUL 20 MLI C3 H2 O4 2- FORMUL 21 HOH *734(H2 O) HELIX 1 AA1 ILE A 5 ASP A 10 1 6 HELIX 2 AA2 ASP A 10 ARG A 24 1 15 HELIX 3 AA3 PRO A 28 ALA A 68 1 41 HELIX 4 AA4 PRO A 79 ASN A 88 1 10 HELIX 5 AA5 LYS A 92 GLU A 97 1 6 HELIX 6 AA6 CYS A 100 LEU A 134 1 35 HELIX 7 AA7 ASP A 149 ASN A 154 1 6 HELIX 8 AA8 ASN A 170 LEU A 178 1 9 HELIX 9 AA9 SER A 184 GLY A 192 1 9 HELIX 10 AB1 GLY A 200 LYS A 219 1 20 HELIX 11 AB2 ARG A 233 ALA A 240 1 8 HELIX 12 AB3 GLN A 241 GLU A 248 1 8 HELIX 13 AB4 SER A 265 HIS A 273 1 9 HELIX 14 AB5 GLU A 328 LEU A 348 1 21 HELIX 15 AB6 ASP A 393 ASN A 400 1 8 HELIX 16 AB7 ILE A 429 GLN A 441 1 13 HELIX 17 AB8 PRO A 449 MET A 456 5 8 HELIX 18 AB9 ASP B 10 ARG B 24 1 15 HELIX 19 AC1 PRO B 28 ALA B 68 1 41 HELIX 20 AC2 PRO B 79 ASN B 88 1 10 HELIX 21 AC3 LYS B 92 GLN B 98 1 7 HELIX 22 AC4 CYS B 100 LEU B 134 1 35 HELIX 23 AC5 ASP B 149 ASN B 154 1 6 HELIX 24 AC6 ASN B 170 LEU B 178 1 9 HELIX 25 AC7 SER B 184 GLY B 192 1 9 HELIX 26 AC8 GLY B 200 LYS B 219 1 20 HELIX 27 AC9 ARG B 233 ALA B 240 1 8 HELIX 28 AD1 GLN B 241 GLU B 248 1 8 HELIX 29 AD2 SER B 265 HIS B 273 1 9 HELIX 30 AD3 PRO B 325 GLN B 327 5 3 HELIX 31 AD4 GLU B 328 GLY B 349 1 22 HELIX 32 AD5 ASP B 393 ASN B 400 1 8 HELIX 33 AD6 ILE B 429 GLN B 441 1 13 HELIX 34 AD7 PRO B 449 MET B 456 5 8 SHEET 1 AA110 THR A 155 PHE A 160 0 SHEET 2 AA110 TYR A 352 ASN A 356 -1 O ASN A 356 N THR A 155 SHEET 3 AA110 LYS A 368 PHE A 376 -1 O ASP A 371 N VAL A 355 SHEET 4 AA110 ALA A 381 ASN A 390 -1 O CYS A 388 N TYR A 370 SHEET 5 AA110 HIS A 420 ALA A 428 -1 O ASN A 423 N SER A 389 SHEET 6 AA110 GLN A 313 CYS A 323 -1 N GLN A 319 O GLY A 424 SHEET 7 AA110 LEU A 285 PHE A 294 -1 N TYR A 287 O PHE A 320 SHEET 8 AA110 THR A 223 TYR A 226 1 N THR A 223 O LYS A 286 SHEET 9 AA110 VAL B 197 LYS B 199 -1 O LEU B 198 N TYR A 226 SHEET 10 AA110 MET B 181 ASP B 182 -1 N ASP B 182 O VAL B 197 SHEET 1 AA210 MET A 181 ASP A 182 0 SHEET 2 AA210 VAL A 197 LYS A 199 -1 O VAL A 197 N ASP A 182 SHEET 3 AA210 THR B 223 TYR B 226 -1 O TYR B 226 N LEU A 198 SHEET 4 AA210 LEU B 285 PHE B 294 1 O LYS B 286 N THR B 223 SHEET 5 AA210 GLN B 313 CYS B 323 -1 O PHE B 320 N TYR B 287 SHEET 6 AA210 HIS B 420 ALA B 428 -1 O GLY B 424 N GLN B 319 SHEET 7 AA210 ALA B 381 ASN B 390 -1 N SER B 389 O ASN B 423 SHEET 8 AA210 LYS B 368 PHE B 376 -1 N PHE B 376 O ALA B 381 SHEET 9 AA210 TYR B 352 ASN B 356 -1 N ARG B 353 O GLU B 373 SHEET 10 AA210 THR B 155 PHE B 160 -1 N VAL B 157 O VAL B 354 SHEET 1 AA3 6 PHE A 230 ASN A 232 0 SHEET 2 AA3 6 LYS A 259 LEU A 261 -1 O TYR A 260 N LEU A 231 SHEET 3 AA3 6 GLN A 251 SER A 253 -1 N VAL A 252 O LYS A 259 SHEET 4 AA3 6 GLN B 251 SER B 253 -1 O SER B 253 N GLN A 251 SHEET 5 AA3 6 LYS B 259 LEU B 261 -1 O LYS B 259 N VAL B 252 SHEET 6 AA3 6 PHE B 230 ASN B 232 -1 N LEU B 231 O TYR B 260 SHEET 1 AA4 3 TRP A 277 PHE A 278 0 SHEET 2 AA4 3 ARG A 402 TYR A 403 1 O ARG A 402 N PHE A 278 SHEET 3 AA4 3 GLU A 417 TYR A 418 -1 O GLU A 417 N TYR A 403 SHEET 1 AA5 2 GLY A 445 VAL A 447 0 SHEET 2 AA5 2 MET A 461 ARG A 463 -1 O ILE A 462 N VAL A 446 SHEET 1 AA6 3 TRP B 277 PHE B 278 0 SHEET 2 AA6 3 ARG B 402 TYR B 403 1 O ARG B 402 N PHE B 278 SHEET 3 AA6 3 GLU B 417 TYR B 418 -1 O GLU B 417 N TYR B 403 SHEET 1 AA7 2 GLY B 445 VAL B 447 0 SHEET 2 AA7 2 MET B 461 ARG B 463 -1 O ILE B 462 N VAL B 446 LINK OG SER A 379 NA NA A 506 1555 1555 3.07 LINK OE2 GLU A 384 NA NA A 505 1555 1555 2.29 LINK OG SER A 387 NA NA A 505 1555 1555 2.29 LINK NA NA A 505 O2S FZT A 507 1555 1555 2.35 LINK NA NA A 505 O HOH A 732 1555 1555 2.45 LINK NA NA A 505 O HOH A 880 1555 1555 2.27 LINK NA NA A 505 O HOH A 890 1555 1555 2.27 LINK NA NA A 506 O HOH A 859 1555 11445 2.77 LINK NA NA A 506 O HOH A 885 1555 11445 2.98 LINK O HOH A 847 NA NA B 508 6555 1555 2.46 LINK O HOH A 882 NA NA B 508 6555 1555 2.24 LINK OD1 ASN B 162 NA NA B 508 1555 1555 2.71 LINK OG1 THR B 164 NA NA B 508 1555 1555 2.34 LINK OG SER B 379 NA NA B 509 1555 1555 3.16 LINK OE2 GLU B 384 NA NA B 506 1555 1555 2.28 LINK OG SER B 387 NA NA B 506 1555 1555 2.35 LINK O LEU B 407 NA NA B 507 1555 1555 2.35 LINK O THR B 410 NA NA B 507 1555 1555 2.29 LINK O GLN B 413 NA NA B 507 1555 1555 2.30 LINK NA NA B 506 O2S FZT B 510 1555 1555 2.30 LINK NA NA B 506 O HOH B 619 1555 1555 2.40 LINK NA NA B 506 O HOH B 758 1555 1555 2.26 LINK NA NA B 506 O HOH B 877 1555 1555 2.35 LINK NA NA B 507 O HOH B 692 1555 1555 2.40 LINK NA NA B 507 O HOH B 888 1555 1555 2.59 LINK NA NA B 507 O HOH B 898 1555 1555 2.48 LINK NA NA B 508 O HOH B 871 1555 1555 2.62 LINK NA NA B 509 O HOH B 843 1555 6555 2.50 LINK NA NA B 509 O HOH B 869 1555 6555 2.65 SITE 1 AC1 6 GLY A 137 ASN A 138 ILE A 139 GLN A 397 SITE 2 AC1 6 HOH A 605 HOH A 623 SITE 1 AC2 7 THR A 223 LEU A 285 LYS A 286 TYR A 287 SITE 2 AC2 7 HOH A 632 HOH A 660 HOH A 704 SITE 1 AC3 5 TYR A 272 HIS A 273 ARG A 276 TYR A 287 SITE 2 AC3 5 LYS B 199 SITE 1 AC4 8 ASN A 170 SER A 173 GLU A 176 MET A 181 SITE 2 AC4 8 ASP A 182 THR A 183 SER A 184 HOH A 719 SITE 1 AC5 6 GLU A 384 SER A 387 FZT A 507 HOH A 732 SITE 2 AC5 6 HOH A 880 HOH A 890 SITE 1 AC6 4 ASN A 170 SER A 379 HOH A 859 HOH A 885 SITE 1 AC7 21 THR A 264 GLU A 266 ARG A 295 GLU A 297 SITE 2 AC7 21 PHE A 309 ARG A 310 VAL A 311 PHE A 314 SITE 3 AC7 21 GLU A 318 GLU A 384 LEU A 385 VAL A 386 SITE 4 AC7 21 SER A 387 ASN A 423 THR A 425 ALA A 428 SITE 5 AC7 21 THR A 430 ARG A 431 NA A 505 HOH A 613 SITE 6 AC7 21 HOH A 793 SITE 1 AC8 10 THR A 164 LYS A 165 ARG A 166 TRP B 277 SITE 2 AC8 10 GLY B 404 ASN B 406 HOH B 621 HOH B 628 SITE 3 AC8 10 HOH B 677 HOH B 847 SITE 1 AC9 6 GLY B 137 ASN B 138 ILE B 139 GLN B 397 SITE 2 AC9 6 HOH B 605 HOH B 652 SITE 1 AD1 8 ARG A 166 ALA A 167 HOH A 817 ARG B 276 SITE 2 AD1 8 TRP B 277 PHE B 278 GOL B 504 HOH B 645 SITE 1 AD2 5 LYS A 199 TYR B 272 HIS B 273 TYR B 287 SITE 2 AD2 5 GOL B 503 SITE 1 AD3 5 THR B 223 LEU B 285 LYS B 286 TYR B 287 SITE 2 AD3 5 HOH B 610 SITE 1 AD4 7 LYS B 369 GLU B 384 SER B 387 FZT B 510 SITE 2 AD4 7 HOH B 619 HOH B 758 HOH B 877 SITE 1 AD5 6 LEU B 407 THR B 410 GLN B 413 HOH B 692 SITE 2 AD5 6 HOH B 888 HOH B 898 SITE 1 AD6 5 HOH A 847 HOH A 882 ASN B 162 THR B 164 SITE 2 AD6 5 HOH B 871 SITE 1 AD7 4 ASN B 170 SER B 379 HOH B 843 HOH B 869 SITE 1 AD8 20 THR B 264 GLU B 266 ARG B 295 GLU B 297 SITE 2 AD8 20 PHE B 309 ARG B 310 VAL B 311 PHE B 314 SITE 3 AD8 20 GLU B 318 GLU B 384 LEU B 385 VAL B 386 SITE 4 AD8 20 SER B 387 ASN B 423 THR B 425 ALA B 428 SITE 5 AD8 20 ARG B 431 NA B 506 HOH B 612 HOH B 810 SITE 1 AD9 8 THR A 164 ARG B 402 ASN B 406 LEU B 407 SITE 2 AD9 8 ARG B 408 HOH B 663 HOH B 718 HOH B 733 CRYST1 177.666 177.666 246.767 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005629 0.003250 0.000000 0.00000 SCALE2 0.000000 0.006499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004052 0.00000