data_6RU3 # _entry.id 6RU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6RU3 WWPDB D_1292102592 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RU3 _pdbx_database_status.recvd_initial_deposition_date 2019-05-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mazarakis, S.M.M.' 1 ? 'Pedersen, D.V.' 2 ? 'Laursen, N.S.' 3 ? 'Andersen, G.R.' 4 0000-0001-6292-3319 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? CH ? ? primary 'Front Immunol' ? ? 1664-3224 ? ? 10 ? 2007 2007 'Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System.' 2019 ? 10.3389/fimmu.2019.02007 31507604 ? ? ? ? ? ? ? ? NE ? ? 1 'Febs Lett.' FEBLAL 0165 0014-5793 ? ? ? ? ? ? 'Crystal structure of peptide-bound neprilysin reveals key binding interactions.' 2019 ? 10.1002/1873-3468.13602 31514225 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pedersen, D.V.' 1 ? primary 'Gadeberg, T.A.F.' 2 ? primary 'Thomas, C.' 3 ? primary 'Wang, Y.' 4 ? primary 'Joram, N.' 5 ? primary 'Jensen, R.K.' 6 ? primary 'Mazarakis, S.M.M.' 7 ? primary 'Revel, M.' 8 ? primary 'El Sissy, C.' 9 ? primary 'Petersen, S.V.' 10 ? primary 'Lindorff-Larsen, K.' 11 ? primary 'Thiel, S.' 12 ? primary 'Laursen, N.S.' 13 ? primary 'Fremeaux-Bacchi, V.' 14 ? primary 'Andersen, G.R.' 15 ? 1 'Moss, S.' 16 ? 1 'Subramanian, V.' 17 ? 1 'Acharya, K.R.' 18 0000-0002-3009-4058 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6RU3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.120 _cell.length_a_esd ? _cell.length_b 65.120 _cell.length_b_esd ? _cell.length_c 169.260 _cell.length_c_esd ? _cell.volume 621603.931 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man hFP1Nb1 14517.155 1 ? ? ? ? 2 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQVQLVESGGGLVQAGGSLRLSCAASERTFTIYAMGWFRQAPGKEREFVAAISRSGENTDYADSVKGRFTISRDNNKNTI SLQMNSLKPEDTAVYYCAAGRAILVHTTKKEYDHWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MQVQLVESGGGLVQAGGSLRLSCAASERTFTIYAMGWFRQAPGKEREFVAAISRSGENTDYADSVKGRFTISRDNNKNTI SLQMNSLKPEDTAVYYCAAGRAILVHTTKKEYDHWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 VAL n 1 4 GLN n 1 5 LEU n 1 6 VAL n 1 7 GLU n 1 8 SER n 1 9 GLY n 1 10 GLY n 1 11 GLY n 1 12 LEU n 1 13 VAL n 1 14 GLN n 1 15 ALA n 1 16 GLY n 1 17 GLY n 1 18 SER n 1 19 LEU n 1 20 ARG n 1 21 LEU n 1 22 SER n 1 23 CYS n 1 24 ALA n 1 25 ALA n 1 26 SER n 1 27 GLU n 1 28 ARG n 1 29 THR n 1 30 PHE n 1 31 THR n 1 32 ILE n 1 33 TYR n 1 34 ALA n 1 35 MET n 1 36 GLY n 1 37 TRP n 1 38 PHE n 1 39 ARG n 1 40 GLN n 1 41 ALA n 1 42 PRO n 1 43 GLY n 1 44 LYS n 1 45 GLU n 1 46 ARG n 1 47 GLU n 1 48 PHE n 1 49 VAL n 1 50 ALA n 1 51 ALA n 1 52 ILE n 1 53 SER n 1 54 ARG n 1 55 SER n 1 56 GLY n 1 57 GLU n 1 58 ASN n 1 59 THR n 1 60 ASP n 1 61 TYR n 1 62 ALA n 1 63 ASP n 1 64 SER n 1 65 VAL n 1 66 LYS n 1 67 GLY n 1 68 ARG n 1 69 PHE n 1 70 THR n 1 71 ILE n 1 72 SER n 1 73 ARG n 1 74 ASP n 1 75 ASN n 1 76 ASN n 1 77 LYS n 1 78 ASN n 1 79 THR n 1 80 ILE n 1 81 SER n 1 82 LEU n 1 83 GLN n 1 84 MET n 1 85 ASN n 1 86 SER n 1 87 LEU n 1 88 LYS n 1 89 PRO n 1 90 GLU n 1 91 ASP n 1 92 THR n 1 93 ALA n 1 94 VAL n 1 95 TYR n 1 96 TYR n 1 97 CYS n 1 98 ALA n 1 99 ALA n 1 100 GLY n 1 101 ARG n 1 102 ALA n 1 103 ILE n 1 104 LEU n 1 105 VAL n 1 106 HIS n 1 107 THR n 1 108 THR n 1 109 LYS n 1 110 LYS n 1 111 GLU n 1 112 TYR n 1 113 ASP n 1 114 HIS n 1 115 TRP n 1 116 GLY n 1 117 GLN n 1 118 GLY n 1 119 THR n 1 120 GLN n 1 121 VAL n 1 122 THR n 1 123 VAL n 1 124 SER n 1 125 SER n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 HIS n 1 130 HIS n 1 131 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 131 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6RU3 _struct_ref.pdbx_db_accession 6RU3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6RU3 _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6RU3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RU3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;13.1 % (v/v) MPD, 13.1 % PEG1000 (w/v) 13.1 % (w/v) PEG3350, 100 mM Tris Bicine pH 8.5, 33 mM CaCl2, 33 mM MgCl2, 4 % (v/v) formamide, 114 mM FOS-Choline 8 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 23.00 _reflns.entry_id 6RU3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.23037 _reflns.d_resolution_low 56.42 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 39873 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 34 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.23037 _reflns_shell.d_res_low 1.26 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2460 _reflns_shell.percent_possible_all 83.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 31.72 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RU3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.26 _refine.ls_d_res_low 33.85 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 39728 _refine.ls_number_reflns_R_free 1993 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.06 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1890 _refine.ls_R_factor_R_free 0.2035 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1883 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.8807 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.26 _refine_hist.d_res_low 33.85 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1064 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 951 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0107 ? 1010 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1530 ? 1373 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0845 ? 148 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0066 ? 180 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.9475 ? 374 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.23 1.26 . . 109 2196 80.96 . . . 0.5997 . 0.5488 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.26 1.30 . . 140 2560 94.04 . . . 0.4177 . 0.4320 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.30 1.33 . . 143 2669 98.22 . . . 0.3883 . 0.3520 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.33 1.38 . . 142 2700 99.68 . . . 0.3027 . 0.3029 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.38 1.43 . . 137 2719 99.79 . . . 0.3004 . 0.2746 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.43 1.48 . . 150 2731 99.97 . . . 0.2665 . 0.2213 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.48 1.55 . . 149 2715 99.93 . . . 0.2528 . 0.2041 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.55 1.63 . . 146 2734 100.00 . . . 0.1893 . 0.1916 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.63 1.73 . . 142 2726 100.00 . . . 0.1983 . 0.1872 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.73 1.87 . . 147 2750 100.00 . . . 0.1993 . 0.1870 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.87 2.06 . . 149 2753 99.97 . . . 0.1742 . 0.1712 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.06 2.35 . . 140 2777 100.00 . . . 0.1729 . 0.1724 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.35 2.96 . . 143 2798 100.00 . . . 0.1840 . 0.1779 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.96 33.86 . . 156 2907 99.97 . . . 0.2061 . 0.1805 . . . . . . . . . . # _struct.entry_id 6RU3 _struct.title 'Crystal structure of the FP specific nanobody hFPNb1' _struct.pdbx_descriptor hFP1Nb1 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RU3 _struct_keywords.text 'antibody, nanobody, single domain antibody, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 29 ? THR A 31 ? THR C 29 THR C 31 5 ? 3 HELX_P HELX_P2 AA2 LYS A 88 ? THR A 92 ? LYS C 88 THR C 92 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 97 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.045 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 5 ? SER A 8 ? LEU C 5 SER C 8 AA1 2 LEU A 19 ? ALA A 25 ? LEU C 19 ALA C 25 AA1 3 THR A 79 ? MET A 84 ? THR C 79 MET C 84 AA1 4 PHE A 69 ? ASP A 74 ? PHE C 69 ASP C 74 AA2 1 GLY A 11 ? GLN A 14 ? GLY C 11 GLN C 14 AA2 2 THR A 119 ? SER A 124 ? THR C 119 SER C 124 AA2 3 ALA A 93 ? ARG A 101 ? ALA C 93 ARG C 101 AA2 4 TYR A 33 ? GLN A 40 ? TYR C 33 GLN C 40 AA2 5 GLU A 47 ? ILE A 52 ? GLU C 47 ILE C 52 AA2 6 THR A 59 ? TYR A 61 ? THR C 59 TYR C 61 AA3 1 GLY A 11 ? GLN A 14 ? GLY C 11 GLN C 14 AA3 2 THR A 119 ? SER A 124 ? THR C 119 SER C 124 AA3 3 ALA A 93 ? ARG A 101 ? ALA C 93 ARG C 101 AA3 4 HIS A 114 ? TRP A 115 ? HIS C 114 TRP C 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 8 ? N SER C 8 O SER A 22 ? O SER C 22 AA1 2 3 N LEU A 19 ? N LEU C 19 O MET A 84 ? O MET C 84 AA1 3 4 O THR A 79 ? O THR C 79 N ASP A 74 ? N ASP C 74 AA2 1 2 N VAL A 13 ? N VAL C 13 O THR A 122 ? O THR C 122 AA2 2 3 O THR A 119 ? O THR C 119 N TYR A 95 ? N TYR C 95 AA2 3 4 O TYR A 96 ? O TYR C 96 N PHE A 38 ? N PHE C 38 AA2 4 5 N ARG A 39 ? N ARG C 39 O GLU A 47 ? O GLU C 47 AA2 5 6 N ALA A 51 ? N ALA C 51 O ASP A 60 ? O ASP C 60 AA3 1 2 N VAL A 13 ? N VAL C 13 O THR A 122 ? O THR C 122 AA3 2 3 O THR A 119 ? O THR C 119 N TYR A 95 ? N TYR C 95 AA3 3 4 N ALA A 99 ? N ALA C 99 O HIS A 114 ? O HIS C 114 # _atom_sites.entry_id 6RU3 _atom_sites.fract_transf_matrix[1][1] 0.015356 _atom_sites.fract_transf_matrix[1][2] 0.008866 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017732 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005908 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? C . n A 1 2 GLN 2 2 2 GLN GLN C . n A 1 3 VAL 3 3 3 VAL VAL C . n A 1 4 GLN 4 4 4 GLN GLN C . n A 1 5 LEU 5 5 5 LEU LEU C . n A 1 6 VAL 6 6 6 VAL VAL C . n A 1 7 GLU 7 7 7 GLU GLU C . n A 1 8 SER 8 8 8 SER SER C . n A 1 9 GLY 9 9 9 GLY GLY C . n A 1 10 GLY 10 10 10 GLY GLY C . n A 1 11 GLY 11 11 11 GLY GLY C . n A 1 12 LEU 12 12 12 LEU LEU C . n A 1 13 VAL 13 13 13 VAL VAL C . n A 1 14 GLN 14 14 14 GLN GLN C . n A 1 15 ALA 15 15 15 ALA ALA C . n A 1 16 GLY 16 16 16 GLY GLY C . n A 1 17 GLY 17 17 17 GLY GLY C . n A 1 18 SER 18 18 18 SER SER C . n A 1 19 LEU 19 19 19 LEU LEU C . n A 1 20 ARG 20 20 20 ARG ARG C . n A 1 21 LEU 21 21 21 LEU LEU C . n A 1 22 SER 22 22 22 SER SER C . n A 1 23 CYS 23 23 23 CYS CYS C . n A 1 24 ALA 24 24 24 ALA ALA C . n A 1 25 ALA 25 25 25 ALA ALA C . n A 1 26 SER 26 26 26 SER SER C . n A 1 27 GLU 27 27 27 GLU GLU C . n A 1 28 ARG 28 28 28 ARG ARG C . n A 1 29 THR 29 29 29 THR THR C . n A 1 30 PHE 30 30 30 PHE PHE C . n A 1 31 THR 31 31 31 THR THR C . n A 1 32 ILE 32 32 32 ILE ILE C . n A 1 33 TYR 33 33 33 TYR TYR C . n A 1 34 ALA 34 34 34 ALA ALA C . n A 1 35 MET 35 35 35 MET MET C . n A 1 36 GLY 36 36 36 GLY GLY C . n A 1 37 TRP 37 37 37 TRP TRP C . n A 1 38 PHE 38 38 38 PHE PHE C . n A 1 39 ARG 39 39 39 ARG ARG C . n A 1 40 GLN 40 40 40 GLN GLN C . n A 1 41 ALA 41 41 41 ALA ALA C . n A 1 42 PRO 42 42 42 PRO PRO C . n A 1 43 GLY 43 43 43 GLY GLY C . n A 1 44 LYS 44 44 44 LYS LYS C . n A 1 45 GLU 45 45 45 GLU GLU C . n A 1 46 ARG 46 46 46 ARG ARG C . n A 1 47 GLU 47 47 47 GLU GLU C . n A 1 48 PHE 48 48 48 PHE PHE C . n A 1 49 VAL 49 49 49 VAL VAL C . n A 1 50 ALA 50 50 50 ALA ALA C . n A 1 51 ALA 51 51 51 ALA ALA C . n A 1 52 ILE 52 52 52 ILE ILE C . n A 1 53 SER 53 53 53 SER SER C . n A 1 54 ARG 54 54 54 ARG ARG C . n A 1 55 SER 55 55 55 SER SER C . n A 1 56 GLY 56 56 56 GLY GLY C . n A 1 57 GLU 57 57 57 GLU GLU C . n A 1 58 ASN 58 58 58 ASN ASN C . n A 1 59 THR 59 59 59 THR THR C . n A 1 60 ASP 60 60 60 ASP ASP C . n A 1 61 TYR 61 61 61 TYR TYR C . n A 1 62 ALA 62 62 62 ALA ALA C . n A 1 63 ASP 63 63 63 ASP ASP C . n A 1 64 SER 64 64 64 SER SER C . n A 1 65 VAL 65 65 65 VAL VAL C . n A 1 66 LYS 66 66 66 LYS LYS C . n A 1 67 GLY 67 67 67 GLY GLY C . n A 1 68 ARG 68 68 68 ARG ARG C . n A 1 69 PHE 69 69 69 PHE PHE C . n A 1 70 THR 70 70 70 THR THR C . n A 1 71 ILE 71 71 71 ILE ILE C . n A 1 72 SER 72 72 72 SER SER C . n A 1 73 ARG 73 73 73 ARG ARG C . n A 1 74 ASP 74 74 74 ASP ASP C . n A 1 75 ASN 75 75 75 ASN ASN C . n A 1 76 ASN 76 76 76 ASN ASN C . n A 1 77 LYS 77 77 77 LYS LYS C . n A 1 78 ASN 78 78 78 ASN ASN C . n A 1 79 THR 79 79 79 THR THR C . n A 1 80 ILE 80 80 80 ILE ILE C . n A 1 81 SER 81 81 81 SER SER C . n A 1 82 LEU 82 82 82 LEU LEU C . n A 1 83 GLN 83 83 83 GLN GLN C . n A 1 84 MET 84 84 84 MET MET C . n A 1 85 ASN 85 85 85 ASN ASN C . n A 1 86 SER 86 86 86 SER SER C . n A 1 87 LEU 87 87 87 LEU LEU C . n A 1 88 LYS 88 88 88 LYS LYS C . n A 1 89 PRO 89 89 89 PRO PRO C . n A 1 90 GLU 90 90 90 GLU GLU C . n A 1 91 ASP 91 91 91 ASP ASP C . n A 1 92 THR 92 92 92 THR THR C . n A 1 93 ALA 93 93 93 ALA ALA C . n A 1 94 VAL 94 94 94 VAL VAL C . n A 1 95 TYR 95 95 95 TYR TYR C . n A 1 96 TYR 96 96 96 TYR TYR C . n A 1 97 CYS 97 97 97 CYS CYS C . n A 1 98 ALA 98 98 98 ALA ALA C . n A 1 99 ALA 99 99 99 ALA ALA C . n A 1 100 GLY 100 100 100 GLY GLY C . n A 1 101 ARG 101 101 101 ARG ARG C . n A 1 102 ALA 102 102 102 ALA ALA C . n A 1 103 ILE 103 103 103 ILE ILE C . n A 1 104 LEU 104 104 104 LEU LEU C . n A 1 105 VAL 105 105 105 VAL VAL C . n A 1 106 HIS 106 106 106 HIS HIS C . n A 1 107 THR 107 107 107 THR THR C . n A 1 108 THR 108 108 108 THR THR C . n A 1 109 LYS 109 109 109 LYS LYS C . n A 1 110 LYS 110 110 110 LYS LYS C . n A 1 111 GLU 111 111 111 GLU GLU C . n A 1 112 TYR 112 112 112 TYR TYR C . n A 1 113 ASP 113 113 113 ASP ASP C . n A 1 114 HIS 114 114 114 HIS HIS C . n A 1 115 TRP 115 115 115 TRP TRP C . n A 1 116 GLY 116 116 116 GLY GLY C . n A 1 117 GLN 117 117 117 GLN GLN C . n A 1 118 GLY 118 118 118 GLY GLY C . n A 1 119 THR 119 119 119 THR THR C . n A 1 120 GLN 120 120 120 GLN GLN C . n A 1 121 VAL 121 121 121 VAL VAL C . n A 1 122 THR 122 122 122 THR THR C . n A 1 123 VAL 123 123 123 VAL VAL C . n A 1 124 SER 124 124 124 SER SER C . n A 1 125 SER 125 125 125 SER SER C . n A 1 126 HIS 126 126 ? ? ? C . n A 1 127 HIS 127 127 ? ? ? C . n A 1 128 HIS 128 128 ? ? ? C . n A 1 129 HIS 129 129 ? ? ? C . n A 1 130 HIS 130 130 ? ? ? C . n A 1 131 HIS 131 131 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 39 HOH HOH C . B 2 HOH 2 202 109 HOH HOH C . B 2 HOH 3 203 47 HOH HOH C . B 2 HOH 4 204 18 HOH HOH C . B 2 HOH 5 205 40 HOH HOH C . B 2 HOH 6 206 70 HOH HOH C . B 2 HOH 7 207 46 HOH HOH C . B 2 HOH 8 208 25 HOH HOH C . B 2 HOH 9 209 17 HOH HOH C . B 2 HOH 10 210 31 HOH HOH C . B 2 HOH 11 211 77 HOH HOH C . B 2 HOH 12 212 118 HOH HOH C . B 2 HOH 13 213 60 HOH HOH C . B 2 HOH 14 214 1 HOH HOH C . B 2 HOH 15 215 100 HOH HOH C . B 2 HOH 16 216 32 HOH HOH C . B 2 HOH 17 217 7 HOH HOH C . B 2 HOH 18 218 59 HOH HOH C . B 2 HOH 19 219 84 HOH HOH C . B 2 HOH 20 220 34 HOH HOH C . B 2 HOH 21 221 9 HOH HOH C . B 2 HOH 22 222 41 HOH HOH C . B 2 HOH 23 223 5 HOH HOH C . B 2 HOH 24 224 27 HOH HOH C . B 2 HOH 25 225 30 HOH HOH C . B 2 HOH 26 226 36 HOH HOH C . B 2 HOH 27 227 2 HOH HOH C . B 2 HOH 28 228 54 HOH HOH C . B 2 HOH 29 229 33 HOH HOH C . B 2 HOH 30 230 52 HOH HOH C . B 2 HOH 31 231 80 HOH HOH C . B 2 HOH 32 232 106 HOH HOH C . B 2 HOH 33 233 62 HOH HOH C . B 2 HOH 34 234 65 HOH HOH C . B 2 HOH 35 235 38 HOH HOH C . B 2 HOH 36 236 21 HOH HOH C . B 2 HOH 37 237 22 HOH HOH C . B 2 HOH 38 238 63 HOH HOH C . B 2 HOH 39 239 45 HOH HOH C . B 2 HOH 40 240 35 HOH HOH C . B 2 HOH 41 241 3 HOH HOH C . B 2 HOH 42 242 104 HOH HOH C . B 2 HOH 43 243 28 HOH HOH C . B 2 HOH 44 244 83 HOH HOH C . B 2 HOH 45 245 10 HOH HOH C . B 2 HOH 46 246 23 HOH HOH C . B 2 HOH 47 247 4 HOH HOH C . B 2 HOH 48 248 78 HOH HOH C . B 2 HOH 49 249 122 HOH HOH C . B 2 HOH 50 250 95 HOH HOH C . B 2 HOH 51 251 24 HOH HOH C . B 2 HOH 52 252 8 HOH HOH C . B 2 HOH 53 253 48 HOH HOH C . B 2 HOH 54 254 81 HOH HOH C . B 2 HOH 55 255 20 HOH HOH C . B 2 HOH 56 256 26 HOH HOH C . B 2 HOH 57 257 49 HOH HOH C . B 2 HOH 58 258 71 HOH HOH C . B 2 HOH 59 259 114 HOH HOH C . B 2 HOH 60 260 58 HOH HOH C . B 2 HOH 61 261 131 HOH HOH C . B 2 HOH 62 262 16 HOH HOH C . B 2 HOH 63 263 55 HOH HOH C . B 2 HOH 64 264 108 HOH HOH C . B 2 HOH 65 265 29 HOH HOH C . B 2 HOH 66 266 13 HOH HOH C . B 2 HOH 67 267 69 HOH HOH C . B 2 HOH 68 268 43 HOH HOH C . B 2 HOH 69 269 15 HOH HOH C . B 2 HOH 70 270 86 HOH HOH C . B 2 HOH 71 271 93 HOH HOH C . B 2 HOH 72 272 128 HOH HOH C . B 2 HOH 73 273 107 HOH HOH C . B 2 HOH 74 274 120 HOH HOH C . B 2 HOH 75 275 124 HOH HOH C . B 2 HOH 76 276 6 HOH HOH C . B 2 HOH 77 277 37 HOH HOH C . B 2 HOH 78 278 134 HOH HOH C . B 2 HOH 79 279 133 HOH HOH C . B 2 HOH 80 280 11 HOH HOH C . B 2 HOH 81 281 76 HOH HOH C . B 2 HOH 82 282 101 HOH HOH C . B 2 HOH 83 283 123 HOH HOH C . B 2 HOH 84 284 57 HOH HOH C . B 2 HOH 85 285 135 HOH HOH C . B 2 HOH 86 286 42 HOH HOH C . B 2 HOH 87 287 50 HOH HOH C . B 2 HOH 88 288 99 HOH HOH C . B 2 HOH 89 289 67 HOH HOH C . B 2 HOH 90 290 53 HOH HOH C . B 2 HOH 91 291 66 HOH HOH C . B 2 HOH 92 292 126 HOH HOH C . B 2 HOH 93 293 85 HOH HOH C . B 2 HOH 94 294 44 HOH HOH C . B 2 HOH 95 295 116 HOH HOH C . B 2 HOH 96 296 132 HOH HOH C . B 2 HOH 97 297 14 HOH HOH C . B 2 HOH 98 298 127 HOH HOH C . B 2 HOH 99 299 75 HOH HOH C . B 2 HOH 100 300 68 HOH HOH C . B 2 HOH 101 301 51 HOH HOH C . B 2 HOH 102 302 19 HOH HOH C . B 2 HOH 103 303 115 HOH HOH C . B 2 HOH 104 304 113 HOH HOH C . B 2 HOH 105 305 64 HOH HOH C . B 2 HOH 106 306 56 HOH HOH C . B 2 HOH 107 307 98 HOH HOH C . B 2 HOH 108 308 97 HOH HOH C . B 2 HOH 109 309 130 HOH HOH C . B 2 HOH 110 310 96 HOH HOH C . B 2 HOH 111 311 111 HOH HOH C . B 2 HOH 112 312 61 HOH HOH C . B 2 HOH 113 313 12 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C HOH 276 ? B HOH . 2 1 C HOH 308 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-21 2 'Structure model' 1 1 2019-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 84 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 84 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 84 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 79.05 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -21.15 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 93 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 179.88 _pdbx_validate_torsion.psi 164.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET 1 ? A MET 1 2 1 Y 1 C HIS 126 ? A HIS 126 3 1 Y 1 C HIS 127 ? A HIS 127 4 1 Y 1 C HIS 128 ? A HIS 128 5 1 Y 1 C HIS 129 ? A HIS 129 6 1 Y 1 C HIS 130 ? A HIS 130 7 1 Y 1 C HIS 131 ? A HIS 131 # _pdbx_audit_support.funding_organization Lundbeckfonden _pdbx_audit_support.country Denmark _pdbx_audit_support.grant_number R155-2015-2666 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.id 1 _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 #