data_6SBX # _entry.id 6SBX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.325 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6SBX WWPDB D_1292103443 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'form one' _pdbx_database_related.db_id 6SBW _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6SBX _pdbx_database_status.recvd_initial_deposition_date 2019-07-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lovering, A.L.' 1 ? 'Cadby, I.T.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 1791 _citation.page_last 1791 _citation.title 'CdbA is a DNA-binding protein and c-di-GMP receptor important for nucleoid organization and segregation in Myxococcus xanthus.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-15628-8 _citation.pdbx_database_id_PubMed 32286293 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Skotnicka, D.' 1 ? primary 'Steinchen, W.' 2 ? primary 'Szadkowski, D.' 3 ? primary 'Cadby, I.T.' 4 0000-0002-3135-6769 primary 'Lovering, A.L.' 5 0000-0002-1856-7975 primary 'Bange, G.' 6 ? primary 'Sogaard-Andersen, L.' 7 0000-0002-0674-0013 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6SBX _cell.details ? _cell.formula_units_Z ? _cell.length_a 134.690 _cell.length_a_esd ? _cell.length_b 134.690 _cell.length_b_esd ? _cell.length_c 53.130 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description CdbA _entity.formula_weight 7964.869 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAGTDKRKQSLYFPEEMLKEIQEEATRQDRSLSWVVQQAWKIARERIKSFPAVNDVTGDERQDPREE _entity_poly.pdbx_seq_one_letter_code_can MAGTDKRKQSLYFPEEMLKEIQEEATRQDRSLSWVVQQAWKIARERIKSFPAVNDVTGDERQDPREE _entity_poly.pdbx_strand_id A,C,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLY n 1 4 THR n 1 5 ASP n 1 6 LYS n 1 7 ARG n 1 8 LYS n 1 9 GLN n 1 10 SER n 1 11 LEU n 1 12 TYR n 1 13 PHE n 1 14 PRO n 1 15 GLU n 1 16 GLU n 1 17 MET n 1 18 LEU n 1 19 LYS n 1 20 GLU n 1 21 ILE n 1 22 GLN n 1 23 GLU n 1 24 GLU n 1 25 ALA n 1 26 THR n 1 27 ARG n 1 28 GLN n 1 29 ASP n 1 30 ARG n 1 31 SER n 1 32 LEU n 1 33 SER n 1 34 TRP n 1 35 VAL n 1 36 VAL n 1 37 GLN n 1 38 GLN n 1 39 ALA n 1 40 TRP n 1 41 LYS n 1 42 ILE n 1 43 ALA n 1 44 ARG n 1 45 GLU n 1 46 ARG n 1 47 ILE n 1 48 LYS n 1 49 SER n 1 50 PHE n 1 51 PRO n 1 52 ALA n 1 53 VAL n 1 54 ASN n 1 55 ASP n 1 56 VAL n 1 57 THR n 1 58 GLY n 1 59 ASP n 1 60 GLU n 1 61 ARG n 1 62 GLN n 1 63 ASP n 1 64 PRO n 1 65 ARG n 1 66 GLU n 1 67 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 67 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MXAN_4361 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Myxococcus xanthus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 34 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1D489_MYXXD _struct_ref.pdbx_db_accession Q1D489 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAGTDKRKQSLYFPEEMLKEIQEEATRQDRSLSWVVQQAWKIARERIKSFPAVNDVTGDERQDPREE _struct_ref.pdbx_align_begin 52 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6SBX A 1 ? 67 ? Q1D489 52 ? 118 ? 1 67 2 1 6SBX C 1 ? 67 ? Q1D489 52 ? 118 ? 1 67 3 1 6SBX B 1 ? 67 ? Q1D489 52 ? 118 ? 1 67 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6SBX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M Na malonate pH 7 0.1M Hepes 30% polyacrylate 2100 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6SBX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.330 _reflns.d_resolution_low 49.47 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10699 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 23.600 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.090 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.330 2.390 ? ? 14271 ? ? ? 743 95.600 ? ? ? ? 1.625 ? ? ? ? ? ? ? ? 19.200 ? ? ? 1.600 1.670 0.378 ? 1 1 0.647 ? 10.420 49.420 ? ? 2780 ? ? ? 152 99.400 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 18.300 ? ? ? 48.900 0.051 0.011 ? 2 1 0.998 ? # _refine.aniso_B[1][1] -2.5100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -2.5100 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 5.0100 _refine.B_iso_max 184.100 _refine.B_iso_mean 99.7280 _refine.B_iso_min 54.840 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6SBX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3300 _refine.ls_d_res_low 49.4700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9739 _refine.ls_number_reflns_R_free 954 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3600 _refine.ls_percent_reflns_R_free 8.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2183 _refine.ls_R_factor_R_free 0.2441 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2157 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2840 _refine.pdbx_overall_ESU_R_Free 0.2170 _refine.pdbx_solvent_vdw_probe_radii 1.3000 _refine.pdbx_solvent_ion_probe_radii 1.2000 _refine.pdbx_solvent_shrinkage_radii 1.2000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 22.9090 _refine.overall_SU_ML 0.2260 _refine.overall_SU_R_Cruickshank_DPI 0.2838 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3300 _refine_hist.d_res_low 49.4700 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1325 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 157 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1325 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.013 1349 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.018 1279 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.552 1.654 1810 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.218 1.592 2969 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.037 5.000 154 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.934 21.477 88 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.928 15.000 269 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 18.839 15.000 15 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.078 0.200 170 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 1472 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 301 ? r_gen_planes_other ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? 0.160 ? 0.050 1 'interatomic distance' ? A 1492 ? ? 1 'X-RAY DIFFRACTION' 2 ? ? 0.160 ? 0.050 2 'interatomic distance' ? C 1492 ? ? 1 'X-RAY DIFFRACTION' 1 ? ? 0.140 ? 0.050 3 'interatomic distance' ? A 1357 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? 0.140 ? 0.050 4 'interatomic distance' ? B 1357 ? ? 2 'X-RAY DIFFRACTION' 1 ? ? 0.140 ? 0.050 5 'interatomic distance' ? C 1376 ? ? 3 'X-RAY DIFFRACTION' 2 ? ? 0.140 ? 0.050 6 'interatomic distance' ? B 1376 ? ? 3 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.3300 _refine_ls_shell.d_res_low 2.3910 _refine_ls_shell.number_reflns_all 743 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_R_work 678 _refine_ls_shell.percent_reflns_obs 95.1300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3400 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3270 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 C 2 1 A 2 2 B 3 1 C 3 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 0 0 A 5 A 57 ? ? ? ? ? ? ? ? ? 1 2 0 0 C 5 C 57 ? ? ? ? ? ? ? ? ? 2 1 0 0 A 5 A 51 ? ? ? ? ? ? ? ? ? 2 2 0 0 B 5 B 51 ? ? ? ? ? ? ? ? ? 3 1 0 0 C 5 C 51 ? ? ? ? ? ? ? ? ? 3 2 0 0 B 5 B 51 ? ? ? ? ? ? ? ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 6SBX _struct.title 'CdbA Form Two' _struct.pdbx_descriptor CdbA _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6SBX _struct_keywords.text 'nucleoid ribbon-helix-helix, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 15 ? GLN A 28 ? GLU A 15 GLN A 28 1 ? 14 HELX_P HELX_P2 AA2 SER A 31 ? PHE A 50 ? SER A 31 PHE A 50 1 ? 20 HELX_P HELX_P3 AA3 PRO B 14 ? GLN B 28 ? PRO C 14 GLN C 28 1 ? 15 HELX_P HELX_P4 AA4 SER B 31 ? PHE B 50 ? SER C 31 PHE C 50 1 ? 20 HELX_P HELX_P5 AA5 GLU C 15 ? GLN C 28 ? GLU B 15 GLN B 28 1 ? 14 HELX_P HELX_P6 AA6 SER C 31 ? PHE C 50 ? SER B 31 PHE B 50 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 6 ? PRO A 14 ? LYS A 6 PRO A 14 AA1 2 LYS C 6 ? PRO C 14 ? LYS B 6 PRO B 14 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ARG _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 7 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 7 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 13 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 13 # _atom_sites.entry_id 6SBX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007424 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007424 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018822 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ASP 59 59 ? ? ? A . n A 1 60 GLU 60 60 ? ? ? A . n A 1 61 ARG 61 61 ? ? ? A . n A 1 62 GLN 62 62 ? ? ? A . n A 1 63 ASP 63 63 ? ? ? A . n A 1 64 PRO 64 64 ? ? ? A . n A 1 65 ARG 65 65 ? ? ? A . n A 1 66 GLU 66 66 ? ? ? A . n A 1 67 GLU 67 67 ? ? ? A . n B 1 1 MET 1 1 ? ? ? C . n B 1 2 ALA 2 2 ? ? ? C . n B 1 3 GLY 3 3 ? ? ? C . n B 1 4 THR 4 4 4 THR THR C . n B 1 5 ASP 5 5 5 ASP ASP C . n B 1 6 LYS 6 6 6 LYS LYS C . n B 1 7 ARG 7 7 7 ARG ARG C . n B 1 8 LYS 8 8 8 LYS LYS C . n B 1 9 GLN 9 9 9 GLN GLN C . n B 1 10 SER 10 10 10 SER SER C . n B 1 11 LEU 11 11 11 LEU LEU C . n B 1 12 TYR 12 12 12 TYR TYR C . n B 1 13 PHE 13 13 13 PHE PHE C . n B 1 14 PRO 14 14 14 PRO PRO C . n B 1 15 GLU 15 15 15 GLU GLU C . n B 1 16 GLU 16 16 16 GLU GLU C . n B 1 17 MET 17 17 17 MET MET C . n B 1 18 LEU 18 18 18 LEU LEU C . n B 1 19 LYS 19 19 19 LYS LYS C . n B 1 20 GLU 20 20 20 GLU GLU C . n B 1 21 ILE 21 21 21 ILE ILE C . n B 1 22 GLN 22 22 22 GLN GLN C . n B 1 23 GLU 23 23 23 GLU GLU C . n B 1 24 GLU 24 24 24 GLU GLU C . n B 1 25 ALA 25 25 25 ALA ALA C . n B 1 26 THR 26 26 26 THR THR C . n B 1 27 ARG 27 27 27 ARG ARG C . n B 1 28 GLN 28 28 28 GLN GLN C . n B 1 29 ASP 29 29 29 ASP ASP C . n B 1 30 ARG 30 30 30 ARG ARG C . n B 1 31 SER 31 31 31 SER SER C . n B 1 32 LEU 32 32 32 LEU LEU C . n B 1 33 SER 33 33 33 SER SER C . n B 1 34 TRP 34 34 34 TRP TRP C . n B 1 35 VAL 35 35 35 VAL VAL C . n B 1 36 VAL 36 36 36 VAL VAL C . n B 1 37 GLN 37 37 37 GLN GLN C . n B 1 38 GLN 38 38 38 GLN GLN C . n B 1 39 ALA 39 39 39 ALA ALA C . n B 1 40 TRP 40 40 40 TRP TRP C . n B 1 41 LYS 41 41 41 LYS LYS C . n B 1 42 ILE 42 42 42 ILE ILE C . n B 1 43 ALA 43 43 43 ALA ALA C . n B 1 44 ARG 44 44 44 ARG ARG C . n B 1 45 GLU 45 45 45 GLU GLU C . n B 1 46 ARG 46 46 46 ARG ARG C . n B 1 47 ILE 47 47 47 ILE ILE C . n B 1 48 LYS 48 48 48 LYS LYS C . n B 1 49 SER 49 49 49 SER SER C . n B 1 50 PHE 50 50 50 PHE PHE C . n B 1 51 PRO 51 51 51 PRO PRO C . n B 1 52 ALA 52 52 52 ALA ALA C . n B 1 53 VAL 53 53 53 VAL VAL C . n B 1 54 ASN 54 54 54 ASN ASN C . n B 1 55 ASP 55 55 55 ASP ASP C . n B 1 56 VAL 56 56 56 VAL VAL C . n B 1 57 THR 57 57 57 THR THR C . n B 1 58 GLY 58 58 58 GLY GLY C . n B 1 59 ASP 59 59 ? ? ? C . n B 1 60 GLU 60 60 ? ? ? C . n B 1 61 ARG 61 61 ? ? ? C . n B 1 62 GLN 62 62 ? ? ? C . n B 1 63 ASP 63 63 ? ? ? C . n B 1 64 PRO 64 64 ? ? ? C . n B 1 65 ARG 65 65 ? ? ? C . n B 1 66 GLU 66 66 ? ? ? C . n B 1 67 GLU 67 67 ? ? ? C . n C 1 1 MET 1 1 ? ? ? B . n C 1 2 ALA 2 2 ? ? ? B . n C 1 3 GLY 3 3 ? ? ? B . n C 1 4 THR 4 4 ? ? ? B . n C 1 5 ASP 5 5 5 ASP ASP B . n C 1 6 LYS 6 6 6 LYS LYS B . n C 1 7 ARG 7 7 7 ARG ARG B . n C 1 8 LYS 8 8 8 LYS LYS B . n C 1 9 GLN 9 9 9 GLN GLN B . n C 1 10 SER 10 10 10 SER SER B . n C 1 11 LEU 11 11 11 LEU LEU B . n C 1 12 TYR 12 12 12 TYR TYR B . n C 1 13 PHE 13 13 13 PHE PHE B . n C 1 14 PRO 14 14 14 PRO PRO B . n C 1 15 GLU 15 15 15 GLU GLU B . n C 1 16 GLU 16 16 16 GLU GLU B . n C 1 17 MET 17 17 17 MET MET B . n C 1 18 LEU 18 18 18 LEU LEU B . n C 1 19 LYS 19 19 19 LYS LYS B . n C 1 20 GLU 20 20 20 GLU GLU B . n C 1 21 ILE 21 21 21 ILE ILE B . n C 1 22 GLN 22 22 22 GLN GLN B . n C 1 23 GLU 23 23 23 GLU GLU B . n C 1 24 GLU 24 24 24 GLU GLU B . n C 1 25 ALA 25 25 25 ALA ALA B . n C 1 26 THR 26 26 26 THR THR B . n C 1 27 ARG 27 27 27 ARG ARG B . n C 1 28 GLN 28 28 28 GLN GLN B . n C 1 29 ASP 29 29 29 ASP ASP B . n C 1 30 ARG 30 30 30 ARG ARG B . n C 1 31 SER 31 31 31 SER SER B . n C 1 32 LEU 32 32 32 LEU LEU B . n C 1 33 SER 33 33 33 SER SER B . n C 1 34 TRP 34 34 34 TRP TRP B . n C 1 35 VAL 35 35 35 VAL VAL B . n C 1 36 VAL 36 36 36 VAL VAL B . n C 1 37 GLN 37 37 37 GLN GLN B . n C 1 38 GLN 38 38 38 GLN GLN B . n C 1 39 ALA 39 39 39 ALA ALA B . n C 1 40 TRP 40 40 40 TRP TRP B . n C 1 41 LYS 41 41 41 LYS LYS B . n C 1 42 ILE 42 42 42 ILE ILE B . n C 1 43 ALA 43 43 43 ALA ALA B . n C 1 44 ARG 44 44 44 ARG ARG B . n C 1 45 GLU 45 45 45 GLU GLU B . n C 1 46 ARG 46 46 46 ARG ARG B . n C 1 47 ILE 47 47 47 ILE ILE B . n C 1 48 LYS 48 48 48 LYS LYS B . n C 1 49 SER 49 49 49 SER SER B . n C 1 50 PHE 50 50 50 PHE PHE B . n C 1 51 PRO 51 51 51 PRO PRO B . n C 1 52 ALA 52 52 52 ALA ALA B . n C 1 53 VAL 53 53 ? ? ? B . n C 1 54 ASN 54 54 ? ? ? B . n C 1 55 ASP 55 55 ? ? ? B . n C 1 56 VAL 56 56 ? ? ? B . n C 1 57 THR 57 57 ? ? ? B . n C 1 58 GLY 58 58 ? ? ? B . n C 1 59 ASP 59 59 ? ? ? B . n C 1 60 GLU 60 60 ? ? ? B . n C 1 61 ARG 61 61 ? ? ? B . n C 1 62 GLN 62 62 ? ? ? B . n C 1 63 ASP 63 63 ? ? ? B . n C 1 64 PRO 64 64 ? ? ? B . n C 1 65 ARG 65 65 ? ? ? B . n C 1 66 GLU 66 66 ? ? ? B . n C 1 67 GLU 67 67 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 1 1,2 B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 15_554 y,x,-z-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -53.1300000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-04-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 4.3810 -22.3610 -9.4880 0.3437 ? -0.1279 ? -0.0805 ? 0.4354 ? -0.2331 ? 0.4838 ? 3.6418 ? 1.6693 ? 2.0154 ? 5.9294 ? 1.8281 ? 7.9935 ? 0.1860 ? -0.4268 ? 0.3457 ? 0.7482 ? -0.1551 ? -0.6310 ? -0.6943 ? 0.8457 ? -0.0309 ? 2 'X-RAY DIFFRACTION' ? refined -19.5250 -20.2720 -26.6370 0.1466 ? -0.0370 ? 0.2005 ? 0.1668 ? -0.1042 ? 0.4269 ? 6.1014 ? -1.8342 ? 4.6082 ? 5.1708 ? -2.5262 ? 4.9669 ? 0.2118 ? 0.2087 ? 0.4100 ? -0.0157 ? 0.0698 ? -0.3832 ? -0.1623 ? 0.2076 ? -0.2816 ? 3 'X-RAY DIFFRACTION' ? refined 2.1930 -22.7300 -11.3300 0.3145 ? -0.1219 ? -0.0543 ? 0.3312 ? -0.2929 ? 0.3985 ? 6.6748 ? 0.0816 ? 1.7301 ? 4.2618 ? -1.5320 ? 6.8278 ? 0.3295 ? -0.2207 ? 0.3517 ? 0.6682 ? -0.1424 ? -0.5382 ? -0.5275 ? 0.5117 ? -0.1871 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 5 ? ? A 58 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? C 4 ? ? C 58 ? ? 3 'X-RAY DIFFRACTION' 3 ? ? B 5 ? ? B 52 ? ? # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Phil Evans' ? ? ? ? ? ? http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? Aimless ? ? program . 2 ? phasing ? ? 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de ? ? ? ? Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ ? SHELX ? ? package . 3 ? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program 5.8.0253 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 45 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 49 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE C ARG 30 ? ? CZ C ARG 30 ? ? NH2 C ARG 30 ? ? 116.42 120.30 -3.88 0.50 N 2 1 CB B PHE 50 ? ? CA B PHE 50 ? ? C B PHE 50 ? ? 123.46 110.40 13.06 2.00 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 52 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -57.79 _pdbx_validate_torsion.psi 103.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A ASP 59 ? A ASP 59 6 1 Y 1 A GLU 60 ? A GLU 60 7 1 Y 1 A ARG 61 ? A ARG 61 8 1 Y 1 A GLN 62 ? A GLN 62 9 1 Y 1 A ASP 63 ? A ASP 63 10 1 Y 1 A PRO 64 ? A PRO 64 11 1 Y 1 A ARG 65 ? A ARG 65 12 1 Y 1 A GLU 66 ? A GLU 66 13 1 Y 1 A GLU 67 ? A GLU 67 14 1 Y 1 C MET 1 ? B MET 1 15 1 Y 1 C ALA 2 ? B ALA 2 16 1 Y 1 C GLY 3 ? B GLY 3 17 1 Y 1 C ASP 59 ? B ASP 59 18 1 Y 1 C GLU 60 ? B GLU 60 19 1 Y 1 C ARG 61 ? B ARG 61 20 1 Y 1 C GLN 62 ? B GLN 62 21 1 Y 1 C ASP 63 ? B ASP 63 22 1 Y 1 C PRO 64 ? B PRO 64 23 1 Y 1 C ARG 65 ? B ARG 65 24 1 Y 1 C GLU 66 ? B GLU 66 25 1 Y 1 C GLU 67 ? B GLU 67 26 1 Y 1 B MET 1 ? C MET 1 27 1 Y 1 B ALA 2 ? C ALA 2 28 1 Y 1 B GLY 3 ? C GLY 3 29 1 Y 1 B THR 4 ? C THR 4 30 1 Y 1 B VAL 53 ? C VAL 53 31 1 Y 1 B ASN 54 ? C ASN 54 32 1 Y 1 B ASP 55 ? C ASP 55 33 1 Y 1 B VAL 56 ? C VAL 56 34 1 Y 1 B THR 57 ? C THR 57 35 1 Y 1 B GLY 58 ? C GLY 58 36 1 Y 1 B ASP 59 ? C ASP 59 37 1 Y 1 B GLU 60 ? C GLU 60 38 1 Y 1 B ARG 61 ? C ARG 61 39 1 Y 1 B GLN 62 ? C GLN 62 40 1 Y 1 B ASP 63 ? C ASP 63 41 1 Y 1 B PRO 64 ? C PRO 64 42 1 Y 1 B ARG 65 ? C ARG 65 43 1 Y 1 B GLU 66 ? C GLU 66 44 1 Y 1 B GLU 67 ? C GLU 67 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #