data_6SYJ # _entry.id 6SYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6SYJ pdb_00006syj 10.2210/pdb6syj/pdb WWPDB D_1292104480 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-29 2 'Structure model' 1 1 2020-02-12 3 'Structure model' 1 2 2020-04-01 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 2 1 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' atom_site 6 4 'Structure model' atom_site_anisotrop 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_validate_main_chain_plane 11 4 'Structure model' pdbx_validate_peptide_omega 12 4 'Structure model' pdbx_validate_rmsd_angle 13 4 'Structure model' pdbx_validate_torsion 14 4 'Structure model' struct_conn 15 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 3 'Structure model' '_citation_author.identifier_ORCID' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.label_atom_id' 8 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 9 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6SYJ _pdbx_database_status.recvd_initial_deposition_date 2019-09-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gebauer, J.M.' 1 0000-0002-3989-4748 'Maassen, A.' 2 0000-0002-1446-0994 'Schmalz, H.-G.' 3 0000-0003-0489-1827 'Baumann, U.' 4 0000-0003-0383-0168 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 5747 _citation.page_last 5755 _citation.title 'Triple-Helix-Stabilizing Effects in Collagen Model Peptides Containing PPII-Helix-Preorganized Diproline Modules.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201914101 _citation.pdbx_database_id_PubMed 31944532 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maassen, A.' 1 ? primary 'Gebauer, J.M.' 2 ? primary 'Theres Abraham, E.' 3 ? primary 'Grimm, I.' 4 ? primary 'Neudorfl, J.M.' 5 ? primary 'Kuhne, R.' 6 ? primary 'Neundorf, I.' 7 ? primary 'Baumann, U.' 8 ? primary 'Schmalz, H.G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'ProM2 containing collagen model peptide.' 2892.248 3 ? ? ? ? 2 water nat water 18.015 163 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PPGPPGPPGPPGPPGPRGPPG(2L6)GPPGPPGPPG' _entity_poly.pdbx_seq_one_letter_code_can XPPGPPGPPGPPGPPGPRGPPGXGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 PRO n 1 4 GLY n 1 5 PRO n 1 6 PRO n 1 7 GLY n 1 8 PRO n 1 9 PRO n 1 10 GLY n 1 11 PRO n 1 12 PRO n 1 13 GLY n 1 14 PRO n 1 15 PRO n 1 16 GLY n 1 17 PRO n 1 18 ARG n 1 19 GLY n 1 20 PRO n 1 21 PRO n 1 22 GLY n 1 23 2L6 n 1 24 GLY n 1 25 PRO n 1 26 PRO n 1 27 GLY n 1 28 PRO n 1 29 PRO n 1 30 GLY n 1 31 PRO n 1 32 PRO n 1 33 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2L6 'L-peptide linking' . ;(3S,6R,8aS)-5-oxo-1,2,3,8a-tetrahydrospiro[indolizine-6,2'-pyrrolidine]-3-carboxylic acid ; ? 'C12 H16 N2 O3' 236.267 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 ? ? ? A . n A 1 2 PRO 2 1 ? ? ? A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 2L6 23 22 22 2L6 P2J A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 PRO 31 30 30 PRO PRO A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 GLY 33 32 32 GLY GLY A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 PRO 2 1 1 PRO PRO B . n B 1 3 PRO 3 2 2 PRO PRO B . n B 1 4 GLY 4 3 3 GLY GLY B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 PRO 6 5 5 PRO PRO B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 PRO 8 7 7 PRO PRO B . n B 1 9 PRO 9 8 8 PRO PRO B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 PRO 11 10 10 PRO PRO B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 PRO 14 13 13 PRO PRO B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 PRO 17 16 16 PRO PRO B . n B 1 18 ARG 18 17 17 ARG ARG B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 PRO 20 19 19 PRO PRO B . n B 1 21 PRO 21 20 20 PRO PRO B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 2L6 23 22 22 2L6 P2J B . n B 1 24 GLY 24 23 23 GLY GLY B . n B 1 25 PRO 25 24 24 PRO PRO B . n B 1 26 PRO 26 25 25 PRO PRO B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 PRO 28 27 27 PRO PRO B . n B 1 29 PRO 29 28 28 PRO PRO B . n B 1 30 GLY 30 29 29 GLY GLY B . n B 1 31 PRO 31 30 30 PRO PRO B . n B 1 32 PRO 32 31 ? ? ? B . n B 1 33 GLY 33 32 ? ? ? B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 PRO 2 1 1 PRO PRO C . n C 1 3 PRO 3 2 2 PRO PRO C . n C 1 4 GLY 4 3 3 GLY GLY C . n C 1 5 PRO 5 4 4 PRO PRO C . n C 1 6 PRO 6 5 5 PRO PRO C . n C 1 7 GLY 7 6 6 GLY GLY C . n C 1 8 PRO 8 7 7 PRO PRO C . n C 1 9 PRO 9 8 8 PRO PRO C . n C 1 10 GLY 10 9 9 GLY GLY C . n C 1 11 PRO 11 10 10 PRO PRO C . n C 1 12 PRO 12 11 11 PRO PRO C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 PRO 14 13 13 PRO PRO C . n C 1 15 PRO 15 14 14 PRO PRO C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 PRO 17 16 16 PRO PRO C . n C 1 18 ARG 18 17 17 ARG ARG C . n C 1 19 GLY 19 18 18 GLY GLY C . n C 1 20 PRO 20 19 19 PRO PRO C . n C 1 21 PRO 21 20 20 PRO PRO C . n C 1 22 GLY 22 21 21 GLY GLY C . n C 1 23 2L6 23 22 22 2L6 P2J C . n C 1 24 GLY 24 23 23 GLY GLY C . n C 1 25 PRO 25 24 24 PRO PRO C . n C 1 26 PRO 26 25 25 PRO PRO C . n C 1 27 GLY 27 26 26 GLY GLY C . n C 1 28 PRO 28 27 27 PRO PRO C . n C 1 29 PRO 29 28 28 PRO PRO C . n C 1 30 GLY 30 29 29 GLY GLY C . n C 1 31 PRO 31 30 30 PRO PRO C . n C 1 32 PRO 32 31 ? ? ? C . n C 1 33 GLY 33 32 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 33 HOH HOH A . D 2 HOH 2 102 81 HOH HOH A . D 2 HOH 3 103 73 HOH HOH A . D 2 HOH 4 104 102 HOH HOH A . D 2 HOH 5 105 41 HOH HOH A . D 2 HOH 6 106 52 HOH HOH A . D 2 HOH 7 107 56 HOH HOH A . D 2 HOH 8 108 153 HOH HOH A . D 2 HOH 9 109 4 HOH HOH A . D 2 HOH 10 110 15 HOH HOH A . D 2 HOH 11 111 115 HOH HOH A . D 2 HOH 12 112 146 HOH HOH A . D 2 HOH 13 113 31 HOH HOH A . D 2 HOH 14 114 30 HOH HOH A . D 2 HOH 15 115 5 HOH HOH A . D 2 HOH 16 116 42 HOH HOH A . D 2 HOH 17 117 122 HOH HOH A . D 2 HOH 18 118 114 HOH HOH A . D 2 HOH 19 119 28 HOH HOH A . D 2 HOH 20 120 86 HOH HOH A . D 2 HOH 21 121 87 HOH HOH A . D 2 HOH 22 122 14 HOH HOH A . D 2 HOH 23 123 74 HOH HOH A . D 2 HOH 24 124 47 HOH HOH A . D 2 HOH 25 125 138 HOH HOH A . D 2 HOH 26 126 49 HOH HOH A . D 2 HOH 27 127 51 HOH HOH A . D 2 HOH 28 128 84 HOH HOH A . D 2 HOH 29 129 109 HOH HOH A . D 2 HOH 30 130 128 HOH HOH A . D 2 HOH 31 131 111 HOH HOH A . D 2 HOH 32 132 100 HOH HOH A . D 2 HOH 33 133 88 HOH HOH A . D 2 HOH 34 134 18 HOH HOH A . D 2 HOH 35 135 26 HOH HOH A . D 2 HOH 36 136 141 HOH HOH A . D 2 HOH 37 137 10 HOH HOH A . D 2 HOH 38 138 110 HOH HOH A . D 2 HOH 39 139 34 HOH HOH A . D 2 HOH 40 140 165 HOH HOH A . D 2 HOH 41 141 20 HOH HOH A . D 2 HOH 42 142 147 HOH HOH A . D 2 HOH 43 143 140 HOH HOH A . D 2 HOH 44 144 83 HOH HOH A . D 2 HOH 45 145 61 HOH HOH A . D 2 HOH 46 146 16 HOH HOH A . D 2 HOH 47 147 9 HOH HOH A . D 2 HOH 48 148 29 HOH HOH A . D 2 HOH 49 149 145 HOH HOH A . D 2 HOH 50 150 94 HOH HOH A . D 2 HOH 51 151 67 HOH HOH A . D 2 HOH 52 152 125 HOH HOH A . D 2 HOH 53 153 150 HOH HOH A . D 2 HOH 54 154 7 HOH HOH A . D 2 HOH 55 155 1 HOH HOH A . D 2 HOH 56 156 130 HOH HOH A . D 2 HOH 57 157 82 HOH HOH A . D 2 HOH 58 158 129 HOH HOH A . D 2 HOH 59 159 103 HOH HOH A . D 2 HOH 60 160 98 HOH HOH A . E 2 HOH 1 101 149 HOH HOH B . E 2 HOH 2 102 108 HOH HOH B . E 2 HOH 3 103 127 HOH HOH B . E 2 HOH 4 104 91 HOH HOH B . E 2 HOH 5 105 117 HOH HOH B . E 2 HOH 6 106 66 HOH HOH B . E 2 HOH 7 107 60 HOH HOH B . E 2 HOH 8 108 8 HOH HOH B . E 2 HOH 9 109 6 HOH HOH B . E 2 HOH 10 110 62 HOH HOH B . E 2 HOH 11 111 54 HOH HOH B . E 2 HOH 12 112 93 HOH HOH B . E 2 HOH 13 113 120 HOH HOH B . E 2 HOH 14 114 53 HOH HOH B . E 2 HOH 15 115 152 HOH HOH B . E 2 HOH 16 116 79 HOH HOH B . E 2 HOH 17 117 13 HOH HOH B . E 2 HOH 18 118 45 HOH HOH B . E 2 HOH 19 119 40 HOH HOH B . E 2 HOH 20 120 17 HOH HOH B . E 2 HOH 21 121 64 HOH HOH B . E 2 HOH 22 122 151 HOH HOH B . E 2 HOH 23 123 97 HOH HOH B . E 2 HOH 24 124 63 HOH HOH B . E 2 HOH 25 125 23 HOH HOH B . E 2 HOH 26 126 48 HOH HOH B . E 2 HOH 27 127 144 HOH HOH B . E 2 HOH 28 128 77 HOH HOH B . E 2 HOH 29 129 112 HOH HOH B . E 2 HOH 30 130 116 HOH HOH B . E 2 HOH 31 131 154 HOH HOH B . E 2 HOH 32 132 121 HOH HOH B . E 2 HOH 33 133 113 HOH HOH B . E 2 HOH 34 134 158 HOH HOH B . E 2 HOH 35 135 107 HOH HOH B . E 2 HOH 36 136 65 HOH HOH B . E 2 HOH 37 137 159 HOH HOH B . E 2 HOH 38 138 36 HOH HOH B . E 2 HOH 39 139 132 HOH HOH B . E 2 HOH 40 140 69 HOH HOH B . E 2 HOH 41 141 105 HOH HOH B . E 2 HOH 42 142 104 HOH HOH B . E 2 HOH 43 143 25 HOH HOH B . E 2 HOH 44 144 118 HOH HOH B . E 2 HOH 45 145 24 HOH HOH B . E 2 HOH 46 146 124 HOH HOH B . E 2 HOH 47 147 75 HOH HOH B . E 2 HOH 48 148 143 HOH HOH B . E 2 HOH 49 149 2 HOH HOH B . E 2 HOH 50 150 90 HOH HOH B . E 2 HOH 51 151 12 HOH HOH B . E 2 HOH 52 152 46 HOH HOH B . E 2 HOH 53 153 155 HOH HOH B . E 2 HOH 54 154 22 HOH HOH B . E 2 HOH 55 155 164 HOH HOH B . E 2 HOH 56 156 163 HOH HOH B . F 2 HOH 1 101 161 HOH HOH C . F 2 HOH 2 102 32 HOH HOH C . F 2 HOH 3 103 55 HOH HOH C . F 2 HOH 4 104 38 HOH HOH C . F 2 HOH 5 105 142 HOH HOH C . F 2 HOH 6 106 119 HOH HOH C . F 2 HOH 7 107 131 HOH HOH C . F 2 HOH 8 108 50 HOH HOH C . F 2 HOH 9 109 157 HOH HOH C . F 2 HOH 10 110 156 HOH HOH C . F 2 HOH 11 111 95 HOH HOH C . F 2 HOH 12 112 101 HOH HOH C . F 2 HOH 13 113 19 HOH HOH C . F 2 HOH 14 114 123 HOH HOH C . F 2 HOH 15 115 134 HOH HOH C . F 2 HOH 16 116 3 HOH HOH C . F 2 HOH 17 117 70 HOH HOH C . F 2 HOH 18 118 58 HOH HOH C . F 2 HOH 19 119 71 HOH HOH C . F 2 HOH 20 120 35 HOH HOH C . F 2 HOH 21 121 76 HOH HOH C . F 2 HOH 22 122 80 HOH HOH C . F 2 HOH 23 123 89 HOH HOH C . F 2 HOH 24 124 85 HOH HOH C . F 2 HOH 25 125 59 HOH HOH C . F 2 HOH 26 126 72 HOH HOH C . F 2 HOH 27 127 78 HOH HOH C . F 2 HOH 28 128 139 HOH HOH C . F 2 HOH 29 129 162 HOH HOH C . F 2 HOH 30 130 135 HOH HOH C . F 2 HOH 31 131 137 HOH HOH C . F 2 HOH 32 132 96 HOH HOH C . F 2 HOH 33 133 68 HOH HOH C . F 2 HOH 34 134 27 HOH HOH C . F 2 HOH 35 135 57 HOH HOH C . F 2 HOH 36 136 92 HOH HOH C . F 2 HOH 37 137 21 HOH HOH C . F 2 HOH 38 138 39 HOH HOH C . F 2 HOH 39 139 43 HOH HOH C . F 2 HOH 40 140 106 HOH HOH C . F 2 HOH 41 141 126 HOH HOH C . F 2 HOH 42 142 37 HOH HOH C . F 2 HOH 43 143 148 HOH HOH C . F 2 HOH 44 144 133 HOH HOH C . F 2 HOH 45 145 11 HOH HOH C . F 2 HOH 46 146 44 HOH HOH C . F 2 HOH 47 147 136 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 2 ? CG ? A PRO 3 CG 2 1 Y 1 A PRO 2 ? CD ? A PRO 3 CD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17rc5-3630 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? ARP/wARP ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 103.830 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6SYJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.080 _cell.length_a_esd ? _cell.length_b 22.850 _cell.length_b_esd ? _cell.length_c 53.430 _cell.length_c_esd ? _cell.volume 30917.355 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6SYJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.1 M (NH4)2HPO4, 0.1 M Tris' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-06-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8266 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6SYJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.81 _reflns.d_resolution_low 25.26 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 57795 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.26 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.03824 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.74 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.04171 _reflns.pdbx_Rpim_I_all 0.01637 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.81 _reflns_shell.d_res_low 0.839 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.17 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3409 _reflns_shell.percent_possible_all 55.12 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.8166 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.9748 _reflns_shell.pdbx_Rpim_I_all 0.5215 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.605 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 9.55 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6SYJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.81 _refine.ls_d_res_low 25.26 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 57691 _refine.ls_number_reflns_R_free 1994 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.26 _refine.ls_percent_reflns_R_free 3.45 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1363 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1282 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3AH9 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection (Phenix)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 587 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 750 _refine_hist.d_res_high 0.81 _refine_hist.d_res_low 25.26 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0208 ? 754 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.9066 ? 1096 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0741 ? 74 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0140 ? 180 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.7764 ? 344 ? f_dihedral_angle_d ? ? # _struct.entry_id 6SYJ _struct.title 'Crystal structure of a ProM2 containing triple-helical collagen peptide.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6SYJ _struct_keywords.text 'Collagen model peptide, protein engineering, collagen stability, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6SYJ _struct_ref.pdbx_db_accession 6SYJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6SYJ A 1 ? 33 ? 6SYJ 0 ? 32 ? 0 32 2 1 6SYJ B 1 ? 33 ? 6SYJ 0 ? 32 ? 0 32 3 1 6SYJ C 1 ? 33 ? 6SYJ 0 ? 32 ? 0 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5820 ? 1 MORE -34 ? 1 'SSA (A^2)' 4970 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details 'The collagen triple helix was confirmed by CD spectroscopy' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 22 C ? ? ? 1_555 A 2L6 23 N ? ? A GLY 21 A 2L6 22 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? A 2L6 23 C ? ? ? 1_555 A GLY 24 N ? ? A 2L6 22 A GLY 23 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B PRO 2 N ? ? B ACE 0 B PRO 1 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? B GLY 22 C ? ? ? 1_555 B 2L6 23 N ? ? B GLY 21 B 2L6 22 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? B 2L6 23 C ? ? ? 1_555 B GLY 24 N ? ? B 2L6 22 B GLY 23 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? C ACE 1 C ? ? ? 1_555 C PRO 2 N ? ? C ACE 0 C PRO 1 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale7 covale both ? C GLY 22 C ? ? ? 1_555 C 2L6 23 N ? ? C GLY 21 C 2L6 22 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? C 2L6 23 C ? ? ? 1_555 C GLY 24 N ? ? C 2L6 22 C GLY 23 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 134 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 137 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A 2L6 22 ? ? C A 2L6 22 ? ? N A GLY 23 ? ? 143.10 116.20 26.90 2.00 Y 2 1 CA B 2L6 22 ? ? C B 2L6 22 ? ? N B GLY 23 ? ? 142.78 116.20 26.58 2.00 Y 3 1 CA C 2L6 22 ? ? C C 2L6 22 ? ? N C GLY 23 ? ? 143.23 116.20 27.03 2.00 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 2L6 A 22 ? ? -79.88 31.50 2 1 PRO A 31 ? A -49.91 156.49 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 2L6 A 22 ? ? GLY A 23 ? ? -120.57 2 1 2L6 B 22 ? ? GLY B 23 ? ? -124.04 3 1 2L6 C 22 ? ? GLY C 23 ? ? -128.79 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 2L6 A 22 ? ? 32.91 2 1 2L6 B 22 ? ? 34.83 3 1 2L6 C 22 ? ? 32.52 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # _pdbx_entry_details.entry_id 6SYJ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 154 ? 5.83 . 2 1 O ? B HOH 155 ? 7.01 . 3 1 O ? B HOH 156 ? 7.02 . 4 1 O A C HOH 146 ? 5.85 . 5 1 O ? C HOH 147 ? 7.17 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ACE 0 ? A ACE 1 2 1 Y 1 A PRO 1 ? A PRO 2 3 1 Y 1 B PRO 31 ? B PRO 32 4 1 Y 1 B GLY 32 ? B GLY 33 5 1 Y 1 C PRO 31 ? C PRO 32 6 1 Y 1 C GLY 32 ? C GLY 33 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2L6 N N N N 1 2L6 C30 C N N 2 2L6 C29 C N N 3 2L6 C34 C N N 4 2L6 CA C N R 5 2L6 C31 C N N 6 2L6 O3 O N N 7 2L6 N3 N N N 8 2L6 C26 C N N 9 2L6 C28 C N N 10 2L6 C27 C N S 11 2L6 C24 C N N 12 2L6 C9 C N N 13 2L6 C10 C N S 14 2L6 C C N N 15 2L6 O O N N 16 2L6 H12 H N N 17 2L6 H13 H N N 18 2L6 H14 H N N 19 2L6 H15 H N N 20 2L6 H16 H N N 21 2L6 H17 H N N 22 2L6 H18 H N N 23 2L6 H19 H N N 24 2L6 H20 H N N 25 2L6 H21 H N N 26 2L6 H22 H N N 27 2L6 H23 H N N 28 2L6 H24 H N N 29 2L6 H25 H N N 30 2L6 H H N N 31 2L6 OXT O N N 32 2L6 HXT H N N 33 ACE C C N N 34 ACE O O N N 35 ACE CH3 C N N 36 ACE H H N N 37 ACE H1 H N N 38 ACE H2 H N N 39 ACE H3 H N N 40 ARG N N N N 41 ARG CA C N S 42 ARG C C N N 43 ARG O O N N 44 ARG CB C N N 45 ARG CG C N N 46 ARG CD C N N 47 ARG NE N N N 48 ARG CZ C N N 49 ARG NH1 N N N 50 ARG NH2 N N N 51 ARG OXT O N N 52 ARG H H N N 53 ARG H2 H N N 54 ARG HA H N N 55 ARG HB2 H N N 56 ARG HB3 H N N 57 ARG HG2 H N N 58 ARG HG3 H N N 59 ARG HD2 H N N 60 ARG HD3 H N N 61 ARG HE H N N 62 ARG HH11 H N N 63 ARG HH12 H N N 64 ARG HH21 H N N 65 ARG HH22 H N N 66 ARG HXT H N N 67 GLY N N N N 68 GLY CA C N N 69 GLY C C N N 70 GLY O O N N 71 GLY OXT O N N 72 GLY H H N N 73 GLY H2 H N N 74 GLY HA2 H N N 75 GLY HA3 H N N 76 GLY HXT H N N 77 HOH O O N N 78 HOH H1 H N N 79 HOH H2 H N N 80 PRO N N N N 81 PRO CA C N S 82 PRO C C N N 83 PRO O O N N 84 PRO CB C N N 85 PRO CG C N N 86 PRO CD C N N 87 PRO OXT O N N 88 PRO H H N N 89 PRO HA H N N 90 PRO HB2 H N N 91 PRO HB3 H N N 92 PRO HG2 H N N 93 PRO HG3 H N N 94 PRO HD2 H N N 95 PRO HD3 H N N 96 PRO HXT H N N 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2L6 N C30 sing N N 1 2L6 N CA sing N N 2 2L6 C26 C28 doub N N 3 2L6 C26 CA sing N N 4 2L6 C28 C27 sing N N 5 2L6 C30 C29 sing N N 6 2L6 CA C31 sing N N 7 2L6 CA C34 sing N N 8 2L6 C24 C27 sing N N 9 2L6 C24 C9 sing N N 10 2L6 C31 O3 doub N N 11 2L6 C31 N3 sing N N 12 2L6 C27 N3 sing N N 13 2L6 N3 C10 sing N N 14 2L6 C9 C10 sing N N 15 2L6 C10 C sing N N 16 2L6 C34 C29 sing N N 17 2L6 C O doub N N 18 2L6 C30 H12 sing N N 19 2L6 C30 H13 sing N N 20 2L6 C29 H14 sing N N 21 2L6 C29 H15 sing N N 22 2L6 C34 H16 sing N N 23 2L6 C34 H17 sing N N 24 2L6 C26 H18 sing N N 25 2L6 C28 H19 sing N N 26 2L6 C27 H20 sing N N 27 2L6 C24 H21 sing N N 28 2L6 C24 H22 sing N N 29 2L6 C9 H23 sing N N 30 2L6 C9 H24 sing N N 31 2L6 C10 H25 sing N N 32 2L6 N H sing N N 33 2L6 C OXT sing N N 34 2L6 OXT HXT sing N N 35 ACE C O doub N N 36 ACE C CH3 sing N N 37 ACE C H sing N N 38 ACE CH3 H1 sing N N 39 ACE CH3 H2 sing N N 40 ACE CH3 H3 sing N N 41 ARG N CA sing N N 42 ARG N H sing N N 43 ARG N H2 sing N N 44 ARG CA C sing N N 45 ARG CA CB sing N N 46 ARG CA HA sing N N 47 ARG C O doub N N 48 ARG C OXT sing N N 49 ARG CB CG sing N N 50 ARG CB HB2 sing N N 51 ARG CB HB3 sing N N 52 ARG CG CD sing N N 53 ARG CG HG2 sing N N 54 ARG CG HG3 sing N N 55 ARG CD NE sing N N 56 ARG CD HD2 sing N N 57 ARG CD HD3 sing N N 58 ARG NE CZ sing N N 59 ARG NE HE sing N N 60 ARG CZ NH1 sing N N 61 ARG CZ NH2 doub N N 62 ARG NH1 HH11 sing N N 63 ARG NH1 HH12 sing N N 64 ARG NH2 HH21 sing N N 65 ARG NH2 HH22 sing N N 66 ARG OXT HXT sing N N 67 GLY N CA sing N N 68 GLY N H sing N N 69 GLY N H2 sing N N 70 GLY CA C sing N N 71 GLY CA HA2 sing N N 72 GLY CA HA3 sing N N 73 GLY C O doub N N 74 GLY C OXT sing N N 75 GLY OXT HXT sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 PRO N CA sing N N 79 PRO N CD sing N N 80 PRO N H sing N N 81 PRO CA C sing N N 82 PRO CA CB sing N N 83 PRO CA HA sing N N 84 PRO C O doub N N 85 PRO C OXT sing N N 86 PRO CB CG sing N N 87 PRO CB HB2 sing N N 88 PRO CB HB3 sing N N 89 PRO CG CD sing N N 90 PRO CG HG2 sing N N 91 PRO CG HG3 sing N N 92 PRO CD HD2 sing N N 93 PRO CD HD3 sing N N 94 PRO OXT HXT sing N N 95 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'INST 216/682-1' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 2L6 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 2L6 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3AH9 _pdbx_initial_refinement_model.details ? # _space_group.crystal_system monoclinic _space_group.name_H-M_alt 'P 1 21 1' _space_group.IT_number 4 _space_group.name_Hall 'P 2yb' _space_group.id 1 # _atom_sites.entry_id 6SYJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.038344 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009439 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043764 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019275 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_