data_6T33 # _entry.id 6T33 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6T33 pdb_00006t33 10.2210/pdb6t33/pdb WWPDB D_1292104735 ? ? BMRB 50027 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 50027 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6T33 _pdbx_database_status.recvd_initial_deposition_date 2019-10-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chiumento, S.' 1 ? 'Roblin, C.' 2 ? 'Bornet, O.' 3 ? 'Nouailler, M.' 4 ? 'Muller, C.' 5 ? 'Basset, C.' 6 ? 'Kieffer-Jaquinod, S.' 7 ? 'Coute, Y.' 8 ? 'Torelli, S.' 9 ? 'Le Pape, L.' 10 ? 'Shunemann, V.' 11 ? 'Jeannot, K.' 12 ? 'Nicoletti, C.' 13 ? 'Iranzo, O.' 14 ? 'Maresca, M.' 15 ? 'Giardina, T.' 16 ? 'Fons, M.' 17 ? 'Devillard, E.' 18 ? 'Perrier, J.' 19 ? 'Atta, M.' 20 ? 'Guerlesquin, F.' 21 ? 'Lafond, M.' 22 ? 'Duarte, V.' 23 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 117 _citation.language ? _citation.page_first 19168 _citation.page_last 19177 _citation.title 'The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2004045117 _citation.pdbx_database_id_PubMed 32719135 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Roblin, C.' 1 ? primary 'Chiumento, S.' 2 ? primary 'Bornet, O.' 3 ? primary 'Nouailler, M.' 4 ? primary 'Muller, C.S.' 5 ? primary 'Jeannot, K.' 6 ? primary 'Basset, C.' 7 ? primary 'Kieffer-Jaquinod, S.' 8 ? primary 'Coute, Y.' 9 ? primary 'Torelli, S.' 10 ? primary 'Le Pape, L.' 11 ? primary 'Schunemann, V.' 12 ? primary 'Olleik, H.' 13 ? primary 'De La Villeon, B.' 14 ? primary 'Sockeel, P.' 15 ? primary 'Di Pasquale, E.' 16 ? primary 'Nicoletti, C.' 17 ? primary 'Vidal, N.' 18 ? primary 'Poljak, L.' 19 ? primary 'Iranzo, O.' 20 ? primary 'Giardina, T.' 21 ? primary 'Fons, M.' 22 ? primary 'Devillard, E.' 23 ? primary 'Polard, P.' 24 ? primary 'Maresca, M.' 25 ? primary 'Perrier, J.' 26 ? primary 'Atta, M.' 27 ? primary 'Guerlesquin, F.' 28 ? primary 'Lafond, M.' 29 ? primary 'Duarte, V.' 30 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ruminococcin C' _entity.formula_weight 4333.760 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;Four cysteine sulfur to alpha-carbon cross-links between C3/N16, C5/A12, C22/K42 and C26/R34 D stereochemistry at Ala12 (alpha-S), Asn16 (alpha-S), Arg34 (alpha-S) and Lys42 (alpha-S) ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code WGCVCSGSTAVANSHNAGPAYCVGYCGNNGVVTRNANANVAKTA _entity_poly.pdbx_seq_one_letter_code_can WGCVCSGSTAVANSHNAGPAYCVGYCGNNGVVTRNANANVAKTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 GLY n 1 3 CYS n 1 4 VAL n 1 5 CYS n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 THR n 1 10 ALA n 1 11 VAL n 1 12 ALA n 1 13 ASN n 1 14 SER n 1 15 HIS n 1 16 ASN n 1 17 ALA n 1 18 GLY n 1 19 PRO n 1 20 ALA n 1 21 TYR n 1 22 CYS n 1 23 VAL n 1 24 GLY n 1 25 TYR n 1 26 CYS n 1 27 GLY n 1 28 ASN n 1 29 ASN n 1 30 GLY n 1 31 VAL n 1 32 VAL n 1 33 THR n 1 34 ARG n 1 35 ASN n 1 36 ALA n 1 37 ASN n 1 38 ALA n 1 39 ASN n 1 40 VAL n 1 41 ALA n 1 42 LYS n 1 43 THR n 1 44 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 44 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rumC1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name '[Ruminococcus] gnavus E1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 935582 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code F8QV07_RUMGN _struct_ref.pdbx_db_accession F8QV07 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code WGCVCSGSTAVANSHNAGPAYCVGYCGNNGVVTRNANANVAKTA _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6T33 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession F8QV07 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 63 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 44 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 2 2 '2D 1H-15N HSQC' 2 isotropic 2 2 2 '2D 1H-13C HSQC' 2 isotropic 6 2 2 '3D 1H-15N NOESY' 2 isotropic 15 2 2 '3D 1H-15N TOCSY' 2 isotropic 7 2 2 '3D HNHA' 2 isotropic 3 2 2 '3D HNCA' 2 isotropic 4 2 2 '3D HN(CO)CA' 2 isotropic 5 2 2 '3D HNCACB' 2 isotropic 11 2 2 '3D CBCA(CO)NH' 2 isotropic 10 2 2 '3D HNCO' 2 isotropic 9 2 2 '3D HN(CA)CO' 2 isotropic 8 2 2 '3D HCCH-TOCSY' 2 isotropic 14 1 2 '2D 1H-1H TOCSY' 1 isotropic 13 1 2 '2D 1H-1H NOESY' 1 isotropic 12 1 2 '2D DQF-COSY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 300 bar 1 6.8 10 ? 0.1 mM 1H_sample 0.05 pH ? 0.1 K 2 300 bar 1 6.8 10 ? 0.1 mM 15N13C_sample 0.05 pH 0.1 0.1 K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '2 mM Ruminococcin C1, 10 mM sodium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' 1H_sample solution ? 2 '0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N13C_sample solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 ? 2 'AVANCE III' ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 6T33 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details 'steps : 60000' _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 6T33 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6T33 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 3 collection TopSpin ? 'Bruker Biospin' 6 processing TopSpin ? 'Bruker Biospin' 2 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'peak picking' 'CcpNmr Analysis' ? CCPN 1 'structure calculation' CYANA 2.1 'Guntert P.' 5 refinement CYANA ? 'Guntert, Mumenthaler and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6T33 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6T33 _struct.title 'The unusual structure of Ruminococcin C1 antimicrobial peptide confers activity against clinical pathogens' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6T33 _struct_keywords.text 'bacteriocin, ruminoccin, antibiotic, thioether bridge, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 8 ? ASN A 16 ? SER A 8 ASN A 16 1 ? 9 HELX_P HELX_P2 AA2 GLY A 30 ? ALA A 44 ? GLY A 30 ALA A 44 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 3 ? CYS A 5 ? CYS A 3 CYS A 5 AA1 2 VAL A 23 ? TYR A 25 ? VAL A 23 TYR A 25 # _atom_sites.entry_id 6T33 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ALA 12 12 12 ALA ALS A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 ASN 16 16 16 ASN NSS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ARG 34 34 34 ARG RSS A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LYS 42 42 42 LYS KSS A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ALA 44 44 44 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-12 2 'Structure model' 1 1 2020-08-26 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 6T33 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Ruminococcin C1' 2 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 2 'Ruminococcin C1' 0.2 ? mM '[U-13C; U-15N]' 2 'sodium phosphate' 10 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 2 1 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 3 1 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 4 1 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 5 2 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 6 2 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 7 2 SG A CYS 22 ? ? CA A LYS 42 ? ? 2.00 8 2 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 9 3 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 10 3 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 11 3 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 12 3 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 13 4 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 14 4 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 15 4 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 16 4 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 17 5 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.98 18 5 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 19 5 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 20 5 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 21 6 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 22 6 SG A CYS 22 ? ? CA A LYS 42 ? ? 2.00 23 6 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 24 6 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 25 7 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.97 26 7 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 27 7 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 28 7 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 29 8 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.97 30 8 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 31 8 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 32 8 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 33 9 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 34 9 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 35 9 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 36 9 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 37 10 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.97 38 10 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 39 10 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 40 10 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 41 11 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 42 11 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 43 11 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 44 11 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 45 12 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 46 12 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 47 12 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 48 12 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 49 13 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.98 50 13 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 51 13 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 52 13 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 53 14 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 54 14 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 55 14 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 56 14 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 57 15 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.98 58 15 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 59 15 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 60 15 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 61 16 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 62 16 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 63 16 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 64 16 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 65 17 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 66 17 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.99 67 17 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 68 17 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 69 18 SG A CYS 22 ? ? CA A LYS 42 ? ? 1.98 70 18 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 71 18 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 72 18 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 73 19 SG A CYS 5 ? ? CA A ALA 12 ? ? 1.99 74 19 SG A CYS 22 ? ? CA A LYS 42 ? ? 2.00 75 19 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 76 19 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 77 20 SG A CYS 5 ? ? CA A ALA 12 ? ? 2.00 78 20 SG A CYS 26 ? ? CA A ARG 34 ? ? 2.00 79 20 SG A CYS 22 ? ? CA A LYS 42 ? ? 2.00 80 20 SG A CYS 3 ? ? CA A ASN 16 ? ? 2.04 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? -93.56 57.03 2 1 HIS A 15 ? ? -94.48 -62.06 3 1 ASN A 16 ? ? 51.88 -169.35 4 1 ALA A 17 ? ? -172.39 -59.97 5 1 ASN A 28 ? ? -108.11 43.07 6 2 HIS A 15 ? ? -96.41 -60.71 7 2 ASN A 16 ? ? 51.84 -169.36 8 2 ALA A 17 ? ? -167.04 -66.92 9 2 ASN A 29 ? ? -136.62 -57.53 10 3 SER A 6 ? ? -91.29 58.21 11 3 HIS A 15 ? ? -97.88 -61.45 12 3 ASN A 16 ? ? 51.82 -169.36 13 3 ALA A 17 ? ? -163.82 -60.54 14 3 ASN A 28 ? ? -106.03 40.29 15 4 HIS A 15 ? ? -94.91 -62.16 16 4 ASN A 16 ? ? 51.77 -169.35 17 4 ALA A 17 ? ? -168.20 -53.25 18 5 SER A 6 ? ? -91.10 56.18 19 5 ASN A 16 ? ? 51.84 -169.38 20 5 ALA A 17 ? ? -167.43 -51.74 21 5 CYS A 26 ? ? -167.90 73.68 22 5 ASN A 28 ? ? -145.20 33.57 23 5 ASN A 29 ? ? -152.15 -61.58 24 6 HIS A 15 ? ? -98.28 -62.16 25 6 ASN A 16 ? ? 51.81 -169.39 26 6 ALA A 17 ? ? -168.71 -40.94 27 6 ASN A 29 ? ? -120.98 -66.54 28 7 SER A 6 ? ? -94.15 59.92 29 7 HIS A 15 ? ? -94.10 -62.26 30 7 ASN A 16 ? ? 51.80 -169.36 31 7 ALA A 17 ? ? -169.42 -53.74 32 7 ASN A 29 ? ? -127.96 -55.79 33 8 HIS A 15 ? ? -90.69 -61.50 34 8 ASN A 16 ? ? 51.78 -169.33 35 8 ALA A 17 ? ? -160.85 -62.19 36 8 CYS A 26 ? ? -173.53 55.19 37 8 ASN A 28 ? ? -166.69 31.80 38 8 ASN A 29 ? ? -145.68 -51.83 39 9 HIS A 15 ? ? -101.82 -60.67 40 9 ASN A 16 ? ? 51.80 -169.43 41 9 ALA A 17 ? ? -167.00 -54.60 42 10 HIS A 15 ? ? -91.50 -61.19 43 10 ASN A 16 ? ? 51.78 -169.31 44 10 ALA A 17 ? ? -158.54 -66.08 45 11 HIS A 15 ? ? -97.38 -61.20 46 11 ASN A 16 ? ? 51.78 -169.36 47 11 ALA A 17 ? ? -160.74 -63.88 48 11 CYS A 26 ? ? -167.26 118.04 49 11 ASN A 29 ? ? -149.05 -65.69 50 12 SER A 6 ? ? -92.88 54.91 51 12 HIS A 15 ? ? -91.11 -62.57 52 12 ASN A 16 ? ? 51.82 -169.34 53 12 ALA A 17 ? ? -167.25 -63.04 54 13 SER A 6 ? ? -91.41 51.92 55 13 HIS A 15 ? ? -97.29 -62.83 56 13 ASN A 16 ? ? 51.88 -169.40 57 13 ALA A 17 ? ? -169.93 -48.14 58 13 ASN A 28 ? ? -94.86 51.89 59 13 ASN A 29 ? ? -99.33 -63.38 60 14 HIS A 15 ? ? -92.97 -61.86 61 14 ASN A 16 ? ? 51.80 -169.36 62 14 ALA A 17 ? ? -161.05 -66.56 63 14 ASN A 28 ? ? -99.05 31.89 64 15 ASN A 16 ? ? 51.82 -169.29 65 15 ALA A 17 ? ? -160.14 -62.99 66 15 ASN A 29 ? ? -153.27 -59.40 67 16 HIS A 15 ? ? -90.52 -60.36 68 16 ASN A 16 ? ? 51.80 -169.40 69 16 ALA A 17 ? ? -163.93 -57.39 70 16 ASN A 29 ? ? -132.12 -72.74 71 17 SER A 6 ? ? -95.68 54.81 72 17 HIS A 15 ? ? -97.99 -62.28 73 17 ASN A 16 ? ? 51.88 -169.39 74 17 ALA A 17 ? ? -168.47 -65.11 75 18 SER A 6 ? ? -91.08 57.16 76 18 HIS A 15 ? ? -97.22 -62.10 77 18 ASN A 16 ? ? 51.84 -169.33 78 18 ALA A 17 ? ? -160.69 -63.29 79 19 HIS A 15 ? ? -98.48 -61.44 80 19 ASN A 16 ? ? 51.83 -169.37 81 19 ALA A 17 ? ? -161.97 -56.70 82 19 ASN A 28 ? ? -95.77 48.29 83 20 HIS A 15 ? ? -101.80 -60.27 84 20 ASN A 16 ? ? 51.82 -169.44 85 20 ALA A 17 ? ? -167.33 -54.55 86 20 CYS A 26 ? ? -104.11 -61.16 87 20 ASN A 28 ? ? -145.00 32.87 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-15-CE21-0020 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #