HEADER HYDROLASE 10-OCT-19 6T3D TITLE CRYSTAL STRUCTURE OF AMPC FROM E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: AMPC, AMPA, B4150, JW4111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI STR. K-12 SUBSTR. W3110; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407 KEYWDS BETA LACTAMASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.LANG,T.M.LEISSING,C.J.SCHOFIELD,J.BREM REVDAT 4 24-JAN-24 6T3D 1 REMARK REVDAT 3 30-SEP-20 6T3D 1 JRNL LINK REVDAT 2 01-JUL-20 6T3D 1 JRNL REVDAT 1 24-JUN-20 6T3D 0 JRNL AUTH P.A.LANG,A.PARKOVA,T.M.LEISSING,K.CALVOPINA,R.CAIN,A.KRAJNC, JRNL AUTH 2 T.D.PANDUWAWALA,J.PHILIPPE,C.W.G.FISHWICK,P.TRAPENCIERIS, JRNL AUTH 3 M.G.P.PAGE,C.J.SCHOFIELD,J.BREM JRNL TITL BICYCLIC BORONATES AS POTENT INHIBITORS OF AMPC, THE CLASS C JRNL TITL 2 BETA-LACTAMASE FROM ESCHERICHIA COLI . JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 32545682 JRNL DOI 10.3390/BIOM10060899 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2080 - 4.4428 1.00 2991 150 0.1673 0.1712 REMARK 3 2 4.4428 - 3.5267 1.00 2806 150 0.1362 0.1764 REMARK 3 3 3.5267 - 3.0810 1.00 2760 131 0.1580 0.1722 REMARK 3 4 3.0810 - 2.7993 1.00 2758 135 0.1562 0.1732 REMARK 3 5 2.7993 - 2.5987 1.00 2723 150 0.1541 0.1608 REMARK 3 6 2.5987 - 2.4455 1.00 2706 149 0.1492 0.1671 REMARK 3 7 2.4455 - 2.3230 1.00 2696 150 0.1460 0.1591 REMARK 3 8 2.3230 - 2.2219 1.00 2687 148 0.1548 0.1712 REMARK 3 9 2.2219 - 2.1363 1.00 2690 150 0.1479 0.1716 REMARK 3 10 2.1363 - 2.0626 1.00 2684 154 0.1545 0.1895 REMARK 3 11 2.0626 - 1.9981 1.00 2683 138 0.1574 0.1675 REMARK 3 12 1.9981 - 1.9410 1.00 2706 112 0.1565 0.1851 REMARK 3 13 1.9410 - 1.8899 1.00 2674 136 0.1609 0.1712 REMARK 3 14 1.8899 - 1.8438 1.00 2685 134 0.1578 0.1621 REMARK 3 15 1.8438 - 1.8019 1.00 2666 141 0.1516 0.1807 REMARK 3 16 1.8019 - 1.7635 1.00 2648 153 0.1588 0.1896 REMARK 3 17 1.7635 - 1.7282 1.00 2672 130 0.1700 0.2048 REMARK 3 18 1.7282 - 1.6956 1.00 2665 128 0.1769 0.2279 REMARK 3 19 1.6956 - 1.6653 1.00 2632 159 0.1950 0.1974 REMARK 3 20 1.6653 - 1.6371 1.00 2657 147 0.2007 0.2241 REMARK 3 21 1.6371 - 1.6107 1.00 2663 150 0.2120 0.2589 REMARK 3 22 1.6107 - 1.5859 1.00 2631 141 0.2202 0.2366 REMARK 3 23 1.5859 - 1.5626 1.00 2631 150 0.2269 0.2564 REMARK 3 24 1.5626 - 1.5406 1.00 2641 152 0.2441 0.3056 REMARK 3 25 1.5406 - 1.5198 1.00 2657 144 0.2820 0.2949 REMARK 3 26 1.5198 - 1.5000 1.00 2683 120 0.2998 0.3132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1698 -0.1618 6.9343 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2308 REMARK 3 T33: 0.1790 T12: 0.0093 REMARK 3 T13: 0.0266 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.6666 L22: 2.1140 REMARK 3 L33: 5.4119 L12: -0.1583 REMARK 3 L13: -1.3128 L23: -0.9646 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1662 S13: -0.0277 REMARK 3 S21: -0.3413 S22: -0.1511 S23: -0.4165 REMARK 3 S31: 0.1410 S32: -0.0633 S33: 0.1237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3418 1.1869 17.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.1736 T22: 0.1859 REMARK 3 T33: 0.1771 T12: -0.0041 REMARK 3 T13: 0.0007 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.3951 L22: 2.6723 REMARK 3 L33: 2.6234 L12: 0.7530 REMARK 3 L13: -0.7446 L23: 0.1518 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.1275 S13: 0.0424 REMARK 3 S21: 0.1564 S22: -0.0157 S23: -0.1967 REMARK 3 S31: -0.0666 S32: 0.2704 S33: -0.0245 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2107 5.3928 36.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.3571 T22: 0.2420 REMARK 3 T33: 0.2274 T12: -0.0083 REMARK 3 T13: 0.0595 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.5667 L22: 0.8069 REMARK 3 L33: 2.1001 L12: 0.2804 REMARK 3 L13: -1.2318 L23: -0.3382 REMARK 3 S TENSOR REMARK 3 S11: 0.1546 S12: -0.2284 S13: 0.1453 REMARK 3 S21: 0.2998 S22: -0.0286 S23: 0.1611 REMARK 3 S31: -0.2438 S32: -0.1069 S33: -0.1491 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9547 16.2333 34.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.4405 T22: 0.2442 REMARK 3 T33: 0.3329 T12: 0.0695 REMARK 3 T13: 0.1536 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.7476 L22: 2.4691 REMARK 3 L33: 4.2010 L12: -0.0661 REMARK 3 L13: -0.9084 L23: 0.3757 REMARK 3 S TENSOR REMARK 3 S11: 0.2646 S12: -0.1272 S13: 0.5032 REMARK 3 S21: 0.2431 S22: 0.0577 S23: 0.0973 REMARK 3 S31: -0.7288 S32: -0.2447 S33: -0.2537 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7236 1.0560 39.7047 REMARK 3 T TENSOR REMARK 3 T11: 0.3719 T22: 0.3658 REMARK 3 T33: 0.2279 T12: -0.0427 REMARK 3 T13: -0.0217 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.2496 L22: 1.3613 REMARK 3 L33: 2.3998 L12: 0.5376 REMARK 3 L13: -1.4979 L23: -0.2147 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: -0.5303 S13: 0.0193 REMARK 3 S21: 0.3448 S22: -0.1215 S23: -0.1091 REMARK 3 S31: -0.1486 S32: 0.2576 S33: -0.0125 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8444 7.3752 28.7563 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.2500 REMARK 3 T33: 0.1933 T12: -0.0504 REMARK 3 T13: -0.0066 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.0055 L22: 2.1508 REMARK 3 L33: 2.0996 L12: 0.6727 REMARK 3 L13: -1.1709 L23: -0.1195 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.3139 S13: 0.2506 REMARK 3 S21: 0.2246 S22: 0.0075 S23: -0.1190 REMARK 3 S31: -0.2814 S32: 0.2938 S33: -0.1217 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9923 -10.8075 32.3289 REMARK 3 T TENSOR REMARK 3 T11: 0.3560 T22: 0.2321 REMARK 3 T33: 0.2912 T12: -0.0224 REMARK 3 T13: 0.0900 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.3797 L22: 2.5238 REMARK 3 L33: 3.1203 L12: 0.2912 REMARK 3 L13: -1.3127 L23: -0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.2684 S12: -0.2048 S13: -0.4905 REMARK 3 S21: 0.3233 S22: -0.0080 S23: -0.0564 REMARK 3 S31: 0.4091 S32: 0.1227 S33: 0.2000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5386 1.7675 21.4211 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.3347 REMARK 3 T33: 0.2610 T12: 0.0279 REMARK 3 T13: 0.0281 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 3.4132 L22: 1.5972 REMARK 3 L33: 2.4074 L12: 0.3738 REMARK 3 L13: -1.2321 L23: 0.3303 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.5282 S13: 0.1391 REMARK 3 S21: -0.1429 S22: 0.1159 S23: 0.1870 REMARK 3 S31: -0.2359 S32: -0.4261 S33: -0.0390 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3645 3.0831 17.5353 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.2301 REMARK 3 T33: 0.1747 T12: 0.0140 REMARK 3 T13: 0.0090 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.1555 L22: 2.1984 REMARK 3 L33: 1.9178 L12: 0.7332 REMARK 3 L13: -1.0125 L23: -0.7268 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.2317 S13: 0.0766 REMARK 3 S21: -0.0593 S22: 0.1027 S23: 0.1679 REMARK 3 S31: -0.0685 S32: -0.3397 S33: -0.1173 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2630 1.1940 12.5507 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2001 REMARK 3 T33: 0.1537 T12: 0.0066 REMARK 3 T13: 0.0202 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.5152 L22: 6.3907 REMARK 3 L33: 3.9748 L12: 0.1150 REMARK 3 L13: 0.1580 L23: 0.2371 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.3069 S13: -0.0720 REMARK 3 S21: -0.2786 S22: 0.0396 S23: 0.3319 REMARK 3 S31: -0.0441 S32: -0.1943 S33: -0.0597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 76.60 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 77.10 REMARK 200 R MERGE FOR SHELL (I) : 6.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1IEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG6000, 0.01 M ZNCL2, 0.1 M REMARK 280 MES PH = 6.0, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.59000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.59000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.59000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.59000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.59000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.59000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.59000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.59000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.59000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.79500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 104.38500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.79500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.79500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.79500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 104.38500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.79500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 104.38500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.79500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 104.38500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.79500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 104.38500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 104.38500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.79500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 104.38500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.79500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.79500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.79500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 104.38500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.79500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.79500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 104.38500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 104.38500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 104.38500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.79500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 104.38500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.79500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 104.38500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.79500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.79500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 402 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 787 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CD OE1 NE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 ARG A 14 CZ NH1 NH2 REMARK 470 TYR A 45 OH REMARK 470 LYS A 51 CD CE NZ REMARK 470 GLN A 52 OE1 NE2 REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 LYS A 84 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASN A 102 OD1 ND2 REMARK 470 GLN A 120 OE1 NE2 REMARK 470 ASP A 123 OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 SER A 128 OG REMARK 470 SER A 129 OG REMARK 470 ARG A 133 CD NE CZ NH1 NH2 REMARK 470 GLN A 139 CD OE1 NE2 REMARK 470 LYS A 164 CE NZ REMARK 470 GLN A 172 CD OE1 NE2 REMARK 470 LYS A 183 CE NZ REMARK 470 GLU A 196 OE1 OE2 REMARK 470 LYS A 197 CE NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 ASN A 244 OD1 ND2 REMARK 470 LYS A 246 NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 ARG A 296 CZ NH1 NH2 REMARK 470 LYS A 299 CD CE NZ REMARK 470 THR A 302 OG1 CG2 REMARK 470 ARG A 309 CZ NH1 NH2 REMARK 470 GLU A 331 CD OE1 OE2 REMARK 470 LYS A 332 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 178 -58.97 -124.96 REMARK 500 TYR A 221 19.10 -159.57 REMARK 500 ALA A 307 123.20 -39.49 REMARK 500 ASN A 341 41.93 -99.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HIS A 13 NE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 NE2 REMARK 620 2 HOH A 510 O 100.4 REMARK 620 3 HOH A 562 O 91.8 86.3 REMARK 620 4 HOH A 691 O 89.0 167.6 85.3 REMARK 620 5 HOH A 749 O 97.7 92.6 170.4 94.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 DBREF 6T3D A 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN HET EDO A 401 10 HET ZN A 402 1 HET ZN A 403 1 HET SO4 A 404 5 HET CL A 405 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 CL CL 1- FORMUL 7 HOH *335(H2 O) HELIX 1 AA1 PRO A 5 LYS A 24 1 20 HELIX 2 AA2 VAL A 65 ARG A 80 1 16 HELIX 3 AA3 PRO A 88 TYR A 92 5 5 HELIX 4 AA4 ALA A 98 ASN A 102 5 5 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 ALA A 151 VAL A 163 1 13 HELIX 8 AA8 LYS A 164 GLY A 167 5 4 HELIX 9 AA9 SER A 169 VAL A 178 1 10 HELIX 10 AB1 PRO A 192 TYR A 199 5 8 HELIX 11 AB2 LEU A 216 TYR A 221 1 6 HELIX 12 AB3 THR A 226 LYS A 239 1 14 HELIX 13 AB4 PRO A 240 ILE A 243 5 4 HELIX 14 AB5 GLU A 245 GLN A 256 1 12 HELIX 15 AB6 ASN A 279 ASP A 288 1 10 HELIX 16 AB7 ASP A 288 LEU A 293 1 6 HELIX 17 AB8 PRO A 330 GLU A 333 5 4 HELIX 18 AB9 PRO A 345 GLN A 361 1 17 SHEET 1 AA110 GLN A 52 PRO A 53 0 SHEET 2 AA110 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 AA110 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 AA110 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 AA110 PHE A 322 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 AA110 SER A 311 THR A 319 -1 N GLY A 317 O SER A 324 SHEET 7 AA110 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 AA110 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 AA110 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 AA110 LYS A 299 THR A 305 -1 O LYS A 299 N GLN A 261 SHEET 1 AA2 3 PHE A 60 GLU A 61 0 SHEET 2 AA2 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 AA2 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 AA3 2 GLN A 147 ARG A 148 0 SHEET 2 AA3 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 AA4 2 GLY A 202 ARG A 204 0 SHEET 2 AA4 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 LINK NE2 HIS A 13 ZN ZN A 402 1555 1555 2.03 LINK NE2 HIS A 13 ZN ZN A 402 1555 5555 2.03 LINK NE2 HIS A 186 ZN ZN A 403 1555 1555 2.19 LINK ZN ZN A 403 O HOH A 510 1555 1555 2.04 LINK ZN ZN A 403 O HOH A 562 1555 1555 2.13 LINK ZN ZN A 403 O HOH A 691 1555 1555 1.98 LINK ZN ZN A 403 O HOH A 749 1555 1555 2.11 CISPEP 1 TRP A 276 PRO A 277 0 5.02 CISPEP 2 THR A 302 PRO A 303 0 -1.89 SITE 1 AC1 1 TRP A 93 SITE 1 AC2 2 HIS A 13 CL A 405 SITE 1 AC3 5 HIS A 186 HOH A 510 HOH A 562 HOH A 691 SITE 2 AC3 5 HOH A 749 SITE 1 AC4 5 VAL A 211 SER A 212 THR A 319 GLY A 320 SITE 2 AC4 5 HOH A 506 SITE 1 AC5 3 HIS A 13 ZN A 402 HOH A 829 CRYST1 139.180 139.180 139.180 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007185 0.00000