data_6TGY # _entry.id 6TGY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6TGY pdb_00006tgy 10.2210/pdb6tgy/pdb WWPDB D_1292105447 ? ? EMDB EMD-10501 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-12 2 'Structure model' 1 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' em_3d_fitting_list 5 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_em_3d_fitting_list.accession_code' 4 2 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 5 2 'Structure model' '_em_3d_fitting_list.source_name' 6 2 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6TGY _pdbx_database_status.recvd_initial_deposition_date 2019-11-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-10500 'other EM volume' EMDB . EMD-10499 'other EM volume' PDB . 6TGP unspecified PDB . 6TGN unspecified EMDB 'Cryo-EM structure of p62-PB1 filament (L-type)' EMD-10501 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jakobi, A.J.' 1 0000-0002-7761-2027 'Huber, S.T.' 2 ? 'Mortensen, S.A.' 3 ? 'Sachse, C.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 440 _citation.page_last 440 _citation.title 'Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-14343-8 _citation.pdbx_database_id_PubMed 31974402 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jakobi, A.J.' 1 0000-0002-7761-2027 primary 'Huber, S.T.' 2 0000-0003-3721-5104 primary 'Mortensen, S.A.' 3 ? primary 'Schultz, S.W.' 4 ? primary 'Palara, A.' 5 ? primary 'Kuhm, T.' 6 ? primary 'Shrestha, B.K.' 7 ? primary 'Lamark, T.' 8 0000-0001-6338-3342 primary 'Hagen, W.J.H.' 9 ? primary 'Wilmanns, M.' 10 0000-0002-4643-5435 primary 'Johansen, T.' 11 0000-0003-1451-9578 primary 'Brech, A.' 12 ? primary 'Sachse, C.' 13 0000-0002-1168-5143 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Sequestosome-1 _entity.formula_weight 13704.609 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;EBI3-associated protein of 60 kDa,p60,Phosphotyrosine-independent ligand for the Lck SH2 domain of 62 kDa,Ubiquitin-binding protein p62 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSD EELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMV ; _entity_poly.pdbx_seq_one_letter_code_can ;MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSD EELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 LEU n 1 5 THR n 1 6 VAL n 1 7 LYS n 1 8 ALA n 1 9 TYR n 1 10 LEU n 1 11 LEU n 1 12 GLY n 1 13 LYS n 1 14 GLU n 1 15 ASP n 1 16 ALA n 1 17 ALA n 1 18 ARG n 1 19 GLU n 1 20 ILE n 1 21 ARG n 1 22 ARG n 1 23 PHE n 1 24 SER n 1 25 PHE n 1 26 CYS n 1 27 CYS n 1 28 SER n 1 29 PRO n 1 30 GLU n 1 31 PRO n 1 32 GLU n 1 33 ALA n 1 34 GLU n 1 35 ALA n 1 36 GLU n 1 37 ALA n 1 38 ALA n 1 39 ALA n 1 40 GLY n 1 41 PRO n 1 42 GLY n 1 43 PRO n 1 44 CYS n 1 45 GLU n 1 46 ARG n 1 47 LEU n 1 48 LEU n 1 49 SER n 1 50 ARG n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 LEU n 1 55 PHE n 1 56 PRO n 1 57 ALA n 1 58 LEU n 1 59 ARG n 1 60 PRO n 1 61 GLY n 1 62 GLY n 1 63 PHE n 1 64 GLN n 1 65 ALA n 1 66 HIS n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 GLU n 1 71 ASP n 1 72 GLY n 1 73 ASP n 1 74 LEU n 1 75 VAL n 1 76 ALA n 1 77 PHE n 1 78 SER n 1 79 SER n 1 80 ASP n 1 81 GLU n 1 82 GLU n 1 83 LEU n 1 84 THR n 1 85 MET n 1 86 ALA n 1 87 MET n 1 88 SER n 1 89 TYR n 1 90 VAL n 1 91 LYS n 1 92 ASP n 1 93 ASP n 1 94 ILE n 1 95 PHE n 1 96 ARG n 1 97 ILE n 1 98 TYR n 1 99 ILE n 1 100 LYS n 1 101 GLU n 1 102 LYS n 1 103 LYS n 1 104 GLU n 1 105 CYS n 1 106 ARG n 1 107 ARG n 1 108 ASP n 1 109 HIS n 1 110 ARG n 1 111 PRO n 1 112 PRO n 1 113 CYS n 1 114 ALA n 1 115 GLN n 1 116 GLU n 1 117 ALA n 1 118 PRO n 1 119 ARG n 1 120 ASN n 1 121 MET n 1 122 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 122 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SQSTM1, ORCA, OSIL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 ARG 106 106 ? ? ? A . n A 1 107 ARG 107 107 ? ? ? A . n A 1 108 ASP 108 108 ? ? ? A . n A 1 109 HIS 109 109 ? ? ? A . n A 1 110 ARG 110 110 ? ? ? A . n A 1 111 PRO 111 111 ? ? ? A . n A 1 112 PRO 112 112 ? ? ? A . n A 1 113 CYS 113 113 ? ? ? A . n A 1 114 ALA 114 114 ? ? ? A . n A 1 115 GLN 115 115 ? ? ? A . n A 1 116 GLU 116 116 ? ? ? A . n A 1 117 ALA 117 117 ? ? ? A . n A 1 118 PRO 118 118 ? ? ? A . n A 1 119 ARG 119 119 ? ? ? A . n A 1 120 ASN 120 120 ? ? ? A . n A 1 121 MET 121 121 ? ? ? A . n A 1 122 VAL 122 122 ? ? ? A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6TGY _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6TGY _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6TGY _struct.title 'Cryo-EM structure of p62-PB1 filament (L-type)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6TGY _struct_keywords.text 'Autophagy, apoptosis' _struct_keywords.pdbx_keywords APOPTOSIS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SQSTM_HUMAN _struct_ref.pdbx_db_accession Q13501 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSD EELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMV ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6TGY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13501 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 122 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 122 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.12_b41623.' _pdbx_struct_assembly.oligomeric_details 120-meric _pdbx_struct_assembly.oligomeric_count 120 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? -0.931691 0.363251 -0.000000 208.79073 -0.363251 -0.931691 -0.000000 305.50274 -0.000000 -0.000000 1.000000 -143.61000 3 'point symmetry operation' ? ? 0.149363 0.988782 -0.000000 -18.38989 -0.988782 0.149363 -0.000000 244.86355 -0.000000 -0.000000 1.000000 -138.82300 4 'point symmetry operation' ? ? 0.997416 0.071846 -0.000000 -9.22007 -0.071846 0.997416 -0.000000 9.90810 -0.000000 -0.000000 1.000000 -134.03600 5 'point symmetry operation' ? ? 0.289533 -0.957168 -0.000000 221.99557 0.957168 0.289533 -0.000000 -32.84084 -0.000000 -0.000000 1.000000 -129.24900 6 'point symmetry operation' ? ? -0.870012 -0.493031 -0.000000 314.56825 0.493031 -0.870012 -0.000000 183.30366 -0.000000 -0.000000 1.000000 -124.46200 7 'point symmetry operation' ? ? -0.672367 0.740218 -0.000000 124.08763 -0.740218 -0.672367 -0.000000 321.16331 -0.000000 -0.000000 1.000000 -119.67500 8 'point symmetry operation' ? ? 0.574148 0.818751 -0.000000 -52.30279 -0.818751 0.574148 -0.000000 165.68158 -0.000000 -0.000000 1.000000 -114.88800 9 'point symmetry operation' ? ? 0.925011 -0.379941 -0.000000 60.56023 0.379941 0.925011 -0.000000 -40.59514 -0.000000 -0.000000 1.000000 -110.10100 10 'point symmetry operation' ? ? -0.167113 -0.985938 -0.000000 286.61411 0.985938 -0.167113 -0.000000 24.11804 -0.000000 -0.000000 1.000000 -105.31400 11 'point symmetry operation' ? ? -0.998546 -0.053905 -0.000000 273.22223 0.053905 -0.998546 -0.000000 258.87068 -0.000000 -0.000000 1.000000 -100.52700 12 'point symmetry operation' ? ? -0.272280 0.962218 -0.000000 41.27549 -0.962218 -0.272280 -0.000000 297.45641 -0.000000 -0.000000 1.000000 -95.74000 13 'point symmetry operation' ? ? 0.878734 0.477312 -0.000000 -47.39684 -0.477312 0.878734 -0.000000 79.68275 -0.000000 -0.000000 1.000000 -90.95300 14 'point symmetry operation' ? ? 0.658952 -0.752185 -0.000000 145.53116 0.752185 0.658952 -0.000000 -54.73056 -0.000000 -0.000000 1.000000 -86.16600 15 'point symmetry operation' ? ? -0.588773 -0.808298 -0.000000 319.09816 0.808298 -0.588773 -0.000000 103.89682 -0.000000 -0.000000 1.000000 -81.37900 16 'point symmetry operation' ? ? -0.918032 0.396507 -0.000000 202.54535 -0.396507 -0.918032 -0.000000 308.11140 -0.000000 -0.000000 1.000000 -76.59200 17 'point symmetry operation' ? ? 0.184809 0.982774 -0.000000 -22.30872 -0.982774 0.184809 -0.000000 239.34515 -0.000000 -0.000000 1.000000 -71.80500 18 'point symmetry operation' ? ? 0.999354 0.035946 -0.000000 -4.69911 -0.035946 0.999354 -0.000000 4.87117 -0.000000 -0.000000 1.000000 -67.01800 19 'point symmetry operation' ? ? 0.254939 -0.966957 -0.000000 227.90377 0.966957 0.254939 -0.000000 -29.53886 -0.000000 -0.000000 1.000000 -62.23100 20 'point symmetry operation' ? ? -0.887172 -0.461439 -0.000000 312.64709 0.461439 -0.887172 -0.000000 189.79358 -0.000000 -0.000000 1.000000 -57.44400 21 'point symmetry operation' ? ? -0.645324 0.763909 -0.000000 117.33406 -0.763909 -0.645324 -0.000000 320.71710 -0.000000 -0.000000 1.000000 -52.65700 22 'point symmetry operation' ? ? 0.603208 0.797584 -0.000000 -53.35342 -0.797584 0.603208 -0.000000 158.99533 -0.000000 -0.000000 1.000000 -47.87000 23 'point symmetry operation' ? ? 0.910756 -0.412945 -0.000000 66.85150 0.412945 0.910756 -0.000000 -43.09111 -0.000000 -0.000000 1.000000 -43.08300 24 'point symmetry operation' ? ? -0.202445 -0.979294 -0.000000 290.43310 0.979294 -0.202445 -0.000000 29.70599 -0.000000 -0.000000 1.000000 -38.29600 25 'point symmetry operation' ? ? -0.999838 -0.017976 -0.000000 268.61145 0.017976 -0.999838 -0.000000 263.82554 -0.000000 -0.000000 1.000000 -33.50900 26 'point symmetry operation' ? ? -0.237516 0.971384 -0.000000 35.42760 -0.971384 -0.237516 -0.000000 294.04875 -0.000000 -0.000000 1.000000 -28.72200 27 'point symmetry operation' ? ? 0.895323 0.445417 -0.000000 -45.35932 -0.445417 0.895323 -0.000000 73.22842 -0.000000 -0.000000 1.000000 -23.93500 28 'point symmetry operation' ? ? 0.631488 -0.775386 -0.000000 152.27562 0.775386 0.631488 -0.000000 -54.16302 -0.000000 -0.000000 1.000000 -19.14800 29 'point symmetry operation' ? ? -0.617448 -0.786612 -0.000000 320.02842 0.786612 -0.617448 -0.000000 110.60089 -0.000000 -0.000000 1.000000 -14.36100 30 'point symmetry operation' ? ? -0.903186 0.429250 -0.000000 196.21024 -0.429250 -0.903186 -0.000000 310.49387 -0.000000 -0.000000 1.000000 -9.57400 31 'point symmetry operation' ? ? 0.220016 0.975496 -0.000000 -26.02664 -0.975496 0.220016 -0.000000 233.68946 -0.000000 -0.000000 1.000000 -4.78700 32 'point symmetry operation' ? ? 0.220016 -0.975496 -0.000000 233.68946 0.975496 0.220016 -0.000000 -26.02664 -0.000000 -0.000000 1.000000 4.78700 33 'point symmetry operation' ? ? -0.903186 -0.429250 -0.000000 310.49387 0.429250 -0.903186 -0.000000 196.21024 -0.000000 -0.000000 1.000000 9.57400 34 'point symmetry operation' ? ? -0.617448 0.786612 -0.000000 110.60089 -0.786612 -0.617448 -0.000000 320.02842 -0.000000 -0.000000 1.000000 14.36100 35 'point symmetry operation' ? ? 0.631488 0.775386 -0.000000 -54.16302 -0.775386 0.631488 -0.000000 152.27562 -0.000000 -0.000000 1.000000 19.14800 36 'point symmetry operation' ? ? 0.895323 -0.445417 -0.000000 73.22842 0.445417 0.895323 -0.000000 -45.35932 -0.000000 -0.000000 1.000000 23.93500 37 'point symmetry operation' ? ? -0.237516 -0.971384 -0.000000 294.04875 0.971384 -0.237516 -0.000000 35.42760 -0.000000 -0.000000 1.000000 28.72200 38 'point symmetry operation' ? ? -0.999838 0.017976 -0.000000 263.82554 -0.017976 -0.999838 -0.000000 268.61145 -0.000000 -0.000000 1.000000 33.50900 39 'point symmetry operation' ? ? -0.202445 0.979294 -0.000000 29.70599 -0.979294 -0.202445 -0.000000 290.43310 -0.000000 -0.000000 1.000000 38.29600 40 'point symmetry operation' ? ? 0.910756 0.412945 -0.000000 -43.09111 -0.412945 0.910756 -0.000000 66.85150 -0.000000 -0.000000 1.000000 43.08300 41 'point symmetry operation' ? ? 0.603208 -0.797584 -0.000000 158.99533 0.797584 0.603208 -0.000000 -53.35342 -0.000000 -0.000000 1.000000 47.87000 42 'point symmetry operation' ? ? -0.645324 -0.763909 -0.000000 320.71710 0.763909 -0.645324 -0.000000 117.33406 -0.000000 -0.000000 1.000000 52.65700 43 'point symmetry operation' ? ? -0.887172 0.461439 -0.000000 189.79358 -0.461439 -0.887172 -0.000000 312.64709 -0.000000 -0.000000 1.000000 57.44400 44 'point symmetry operation' ? ? 0.254939 0.966957 -0.000000 -29.53886 -0.966957 0.254939 -0.000000 227.90377 -0.000000 -0.000000 1.000000 62.23100 45 'point symmetry operation' ? ? 0.999354 -0.035946 -0.000000 4.87117 0.035946 0.999354 -0.000000 -4.69911 -0.000000 -0.000000 1.000000 67.01800 46 'point symmetry operation' ? ? 0.184809 -0.982774 -0.000000 239.34515 0.982774 0.184809 -0.000000 -22.30872 -0.000000 -0.000000 1.000000 71.80500 47 'point symmetry operation' ? ? -0.918032 -0.396507 -0.000000 308.11140 0.396507 -0.918032 -0.000000 202.54535 -0.000000 -0.000000 1.000000 76.59200 48 'point symmetry operation' ? ? -0.588773 0.808298 -0.000000 103.89682 -0.808298 -0.588773 -0.000000 319.09816 -0.000000 -0.000000 1.000000 81.37900 49 'point symmetry operation' ? ? 0.658952 0.752185 -0.000000 -54.73056 -0.752185 0.658952 -0.000000 145.53116 -0.000000 -0.000000 1.000000 86.16600 50 'point symmetry operation' ? ? 0.878734 -0.477312 -0.000000 79.68275 0.477312 0.878734 -0.000000 -47.39684 -0.000000 -0.000000 1.000000 90.95300 51 'point symmetry operation' ? ? -0.272280 -0.962218 -0.000000 297.45641 0.962218 -0.272280 -0.000000 41.27549 -0.000000 -0.000000 1.000000 95.74000 52 'point symmetry operation' ? ? -0.998546 0.053905 -0.000000 258.87068 -0.053905 -0.998546 -0.000000 273.22223 -0.000000 -0.000000 1.000000 100.52700 53 'point symmetry operation' ? ? -0.167113 0.985938 -0.000000 24.11804 -0.985938 -0.167113 -0.000000 286.61411 -0.000000 -0.000000 1.000000 105.31400 54 'point symmetry operation' ? ? 0.925011 0.379941 -0.000000 -40.59514 -0.379941 0.925011 -0.000000 60.56023 -0.000000 -0.000000 1.000000 110.10100 55 'point symmetry operation' ? ? 0.574148 -0.818751 -0.000000 165.68158 0.818751 0.574148 -0.000000 -52.30279 -0.000000 -0.000000 1.000000 114.88800 56 'point symmetry operation' ? ? -0.672367 -0.740218 -0.000000 321.16331 0.740218 -0.672367 -0.000000 124.08763 -0.000000 -0.000000 1.000000 119.67500 57 'point symmetry operation' ? ? -0.870012 0.493031 -0.000000 183.30366 -0.493031 -0.870012 -0.000000 314.56825 -0.000000 -0.000000 1.000000 124.46200 58 'point symmetry operation' ? ? 0.289533 0.957168 -0.000000 -32.84084 -0.957168 0.289533 -0.000000 221.99557 -0.000000 -0.000000 1.000000 129.24900 59 'point symmetry operation' ? ? 0.997416 -0.071846 -0.000000 9.90810 0.071846 0.997416 -0.000000 -9.22007 -0.000000 -0.000000 1.000000 134.03600 60 'point symmetry operation' ? ? 0.149363 -0.988782 -0.000000 244.86355 0.988782 0.149363 -0.000000 -18.38989 -0.000000 -0.000000 1.000000 138.82300 61 'point symmetry operation' ? ? 0.931691 -0.363251 -0.000000 57.44927 0.363251 0.931691 -0.000000 -39.26274 -0.000000 -0.000000 1.000000 -143.61000 62 'point symmetry operation' ? ? -0.149363 -0.988782 -0.000000 284.62989 0.988782 -0.149363 -0.000000 21.37645 -0.000000 -0.000000 1.000000 -138.82300 63 'point symmetry operation' ? ? -0.997416 -0.071846 -0.000000 275.46007 0.071846 -0.997416 -0.000000 256.33190 -0.000000 -0.000000 1.000000 -134.03600 64 'point symmetry operation' ? ? -0.289533 0.957168 -0.000000 44.24443 -0.957168 -0.289533 -0.000000 299.08084 -0.000000 -0.000000 1.000000 -129.24900 65 'point symmetry operation' ? ? 0.870012 0.493031 -0.000000 -48.32825 -0.493031 0.870012 -0.000000 82.93634 -0.000000 -0.000000 1.000000 -124.46200 66 'point symmetry operation' ? ? 0.672367 -0.740218 -0.000000 142.15237 0.740218 0.672367 -0.000000 -54.92331 -0.000000 -0.000000 1.000000 -119.67500 67 'point symmetry operation' ? ? -0.574148 -0.818751 -0.000000 318.54279 0.818751 -0.574148 -0.000000 100.55842 -0.000000 -0.000000 1.000000 -114.88800 68 'point symmetry operation' ? ? -0.925011 0.379941 -0.000000 205.67977 -0.379941 -0.925011 -0.000000 306.83514 -0.000000 -0.000000 1.000000 -110.10100 69 'point symmetry operation' ? ? 0.167113 0.985938 -0.000000 -20.37411 -0.985938 0.167113 -0.000000 242.12196 -0.000000 -0.000000 1.000000 -105.31400 70 'point symmetry operation' ? ? 0.998546 0.053905 -0.000000 -6.98223 -0.053905 0.998546 -0.000000 7.36932 -0.000000 -0.000000 1.000000 -100.52700 71 'point symmetry operation' ? ? 0.272280 -0.962218 -0.000000 224.96451 0.962218 0.272280 -0.000000 -31.21641 -0.000000 -0.000000 1.000000 -95.74000 72 'point symmetry operation' ? ? -0.878734 -0.477312 -0.000000 313.63684 0.477312 -0.878734 -0.000000 186.55725 -0.000000 -0.000000 1.000000 -90.95300 73 'point symmetry operation' ? ? -0.658952 0.752185 -0.000000 120.70884 -0.752185 -0.658952 -0.000000 320.97056 -0.000000 -0.000000 1.000000 -86.16600 74 'point symmetry operation' ? ? 0.588773 0.808298 -0.000000 -52.85816 -0.808298 0.588773 -0.000000 162.34318 -0.000000 -0.000000 1.000000 -81.37900 75 'point symmetry operation' ? ? 0.918032 -0.396507 -0.000000 63.69465 0.396507 0.918032 -0.000000 -41.87140 -0.000000 -0.000000 1.000000 -76.59200 76 'point symmetry operation' ? ? -0.184809 -0.982774 -0.000000 288.54872 0.982774 -0.184809 -0.000000 26.89485 -0.000000 -0.000000 1.000000 -71.80500 77 'point symmetry operation' ? ? -0.999354 -0.035946 -0.000000 270.93911 0.035946 -0.999354 -0.000000 261.36883 -0.000000 -0.000000 1.000000 -67.01800 78 'point symmetry operation' ? ? -0.254939 0.966957 -0.000000 38.33623 -0.966957 -0.254939 -0.000000 295.77886 -0.000000 -0.000000 1.000000 -62.23100 79 'point symmetry operation' ? ? 0.887172 0.461439 -0.000000 -46.40709 -0.461439 0.887172 -0.000000 76.44642 -0.000000 -0.000000 1.000000 -57.44400 80 'point symmetry operation' ? ? 0.645324 -0.763909 -0.000000 148.90594 0.763909 0.645324 -0.000000 -54.47710 -0.000000 -0.000000 1.000000 -52.65700 81 'point symmetry operation' ? ? -0.603208 -0.797584 -0.000000 319.59342 0.797584 -0.603208 -0.000000 107.24467 -0.000000 -0.000000 1.000000 -47.87000 82 'point symmetry operation' ? ? -0.910756 0.412945 -0.000000 199.38850 -0.412945 -0.910756 -0.000000 309.33111 -0.000000 -0.000000 1.000000 -43.08300 83 'point symmetry operation' ? ? 0.202445 0.979294 -0.000000 -24.19310 -0.979294 0.202445 -0.000000 236.53401 -0.000000 -0.000000 1.000000 -38.29600 84 'point symmetry operation' ? ? 0.999838 0.017976 -0.000000 -2.37145 -0.017976 0.999838 -0.000000 2.41446 -0.000000 -0.000000 1.000000 -33.50900 85 'point symmetry operation' ? ? 0.237516 -0.971384 -0.000000 230.81240 0.971384 0.237516 -0.000000 -27.80875 -0.000000 -0.000000 1.000000 -28.72200 86 'point symmetry operation' ? ? -0.895323 -0.445417 -0.000000 311.59932 0.445417 -0.895323 -0.000000 193.01158 -0.000000 -0.000000 1.000000 -23.93500 87 'point symmetry operation' ? ? -0.631488 0.775386 -0.000000 113.96438 -0.775386 -0.631488 -0.000000 320.40302 -0.000000 -0.000000 1.000000 -19.14800 88 'point symmetry operation' ? ? 0.617448 0.786612 -0.000000 -53.78842 -0.786612 0.617448 -0.000000 155.63911 -0.000000 -0.000000 1.000000 -14.36100 89 'point symmetry operation' ? ? 0.903186 -0.429250 -0.000000 70.02976 0.429250 0.903186 -0.000000 -44.25387 -0.000000 -0.000000 1.000000 -9.57400 90 'point symmetry operation' ? ? -0.220016 -0.975496 -0.000000 292.26664 0.975496 -0.220016 -0.000000 32.55054 -0.000000 -0.000000 1.000000 -4.78700 91 'point symmetry operation' ? ? -1.000000 -0.000000 -0.000000 266.24000 -0.000000 -1.000000 -0.000000 266.24000 -0.000000 -0.000000 1.000000 0.00000 92 'point symmetry operation' ? ? -0.220016 0.975496 -0.000000 32.55054 -0.975496 -0.220016 -0.000000 292.26664 -0.000000 -0.000000 1.000000 4.78700 93 'point symmetry operation' ? ? 0.903186 0.429250 -0.000000 -44.25387 -0.429250 0.903186 -0.000000 70.02976 -0.000000 -0.000000 1.000000 9.57400 94 'point symmetry operation' ? ? 0.617448 -0.786612 -0.000000 155.63911 0.786612 0.617448 -0.000000 -53.78842 -0.000000 -0.000000 1.000000 14.36100 95 'point symmetry operation' ? ? -0.631488 -0.775386 -0.000000 320.40302 0.775386 -0.631488 -0.000000 113.96438 -0.000000 -0.000000 1.000000 19.14800 96 'point symmetry operation' ? ? -0.895323 0.445417 -0.000000 193.01158 -0.445417 -0.895323 -0.000000 311.59932 -0.000000 -0.000000 1.000000 23.93500 97 'point symmetry operation' ? ? 0.237516 0.971384 -0.000000 -27.80875 -0.971384 0.237516 -0.000000 230.81240 -0.000000 -0.000000 1.000000 28.72200 98 'point symmetry operation' ? ? 0.999838 -0.017976 -0.000000 2.41446 0.017976 0.999838 -0.000000 -2.37145 -0.000000 -0.000000 1.000000 33.50900 99 'point symmetry operation' ? ? 0.202445 -0.979294 -0.000000 236.53401 0.979294 0.202445 -0.000000 -24.19310 -0.000000 -0.000000 1.000000 38.29600 100 'point symmetry operation' ? ? -0.910756 -0.412945 -0.000000 309.33111 0.412945 -0.910756 -0.000000 199.38850 -0.000000 -0.000000 1.000000 43.08300 101 'point symmetry operation' ? ? -0.603208 0.797584 -0.000000 107.24467 -0.797584 -0.603208 -0.000000 319.59342 -0.000000 -0.000000 1.000000 47.87000 102 'point symmetry operation' ? ? 0.645324 0.763909 -0.000000 -54.47710 -0.763909 0.645324 -0.000000 148.90594 -0.000000 -0.000000 1.000000 52.65700 103 'point symmetry operation' ? ? 0.887172 -0.461439 -0.000000 76.44642 0.461439 0.887172 -0.000000 -46.40709 -0.000000 -0.000000 1.000000 57.44400 104 'point symmetry operation' ? ? -0.254939 -0.966957 -0.000000 295.77886 0.966957 -0.254939 -0.000000 38.33623 -0.000000 -0.000000 1.000000 62.23100 105 'point symmetry operation' ? ? -0.999354 0.035946 -0.000000 261.36883 -0.035946 -0.999354 -0.000000 270.93911 -0.000000 -0.000000 1.000000 67.01800 106 'point symmetry operation' ? ? -0.184809 0.982774 -0.000000 26.89485 -0.982774 -0.184809 -0.000000 288.54872 -0.000000 -0.000000 1.000000 71.80500 107 'point symmetry operation' ? ? 0.918032 0.396507 -0.000000 -41.87140 -0.396507 0.918032 -0.000000 63.69465 -0.000000 -0.000000 1.000000 76.59200 108 'point symmetry operation' ? ? 0.588773 -0.808298 -0.000000 162.34318 0.808298 0.588773 -0.000000 -52.85816 -0.000000 -0.000000 1.000000 81.37900 109 'point symmetry operation' ? ? -0.658952 -0.752185 -0.000000 320.97056 0.752185 -0.658952 -0.000000 120.70884 -0.000000 -0.000000 1.000000 86.16600 110 'point symmetry operation' ? ? -0.878734 0.477312 -0.000000 186.55725 -0.477312 -0.878734 -0.000000 313.63684 -0.000000 -0.000000 1.000000 90.95300 111 'point symmetry operation' ? ? 0.272280 0.962218 -0.000000 -31.21641 -0.962218 0.272280 -0.000000 224.96451 -0.000000 -0.000000 1.000000 95.74000 112 'point symmetry operation' ? ? 0.998546 -0.053905 -0.000000 7.36932 0.053905 0.998546 -0.000000 -6.98223 -0.000000 -0.000000 1.000000 100.52700 113 'point symmetry operation' ? ? 0.167113 -0.985938 -0.000000 242.12196 0.985938 0.167113 -0.000000 -20.37411 -0.000000 -0.000000 1.000000 105.31400 114 'point symmetry operation' ? ? -0.925011 -0.379941 -0.000000 306.83514 0.379941 -0.925011 -0.000000 205.67977 -0.000000 -0.000000 1.000000 110.10100 115 'point symmetry operation' ? ? -0.574148 0.818751 -0.000000 100.55842 -0.818751 -0.574148 -0.000000 318.54279 -0.000000 -0.000000 1.000000 114.88800 116 'point symmetry operation' ? ? 0.672367 0.740218 -0.000000 -54.92331 -0.740218 0.672367 -0.000000 142.15237 -0.000000 -0.000000 1.000000 119.67500 117 'point symmetry operation' ? ? 0.870012 -0.493031 -0.000000 82.93634 0.493031 0.870012 -0.000000 -48.32825 -0.000000 -0.000000 1.000000 124.46200 118 'point symmetry operation' ? ? -0.289533 -0.957168 -0.000000 299.08084 0.957168 -0.289533 -0.000000 44.24443 -0.000000 -0.000000 1.000000 129.24900 119 'point symmetry operation' ? ? -0.997416 0.071846 -0.000000 256.33190 -0.071846 -0.997416 -0.000000 275.46007 -0.000000 -0.000000 1.000000 134.03600 120 'point symmetry operation' ? ? -0.149363 0.988782 -0.000000 21.37645 -0.988782 -0.149363 -0.000000 284.62989 -0.000000 -0.000000 1.000000 138.82300 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 42 ? PHE A 55 ? GLY A 42 PHE A 55 1 ? 14 HELX_P HELX_P2 AA2 GLU A 82 ? MET A 87 ? GLU A 82 MET A 87 1 ? 6 HELX_P HELX_P3 AA3 SER A 88 ? VAL A 90 ? SER A 88 VAL A 90 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 17 ? ILE A 20 ? ALA A 17 ILE A 20 AA1 2 LEU A 4 ? LEU A 11 ? LEU A 4 LEU A 11 AA1 3 PHE A 23 ? PHE A 25 ? PHE A 23 PHE A 25 AA2 1 ALA A 17 ? ILE A 20 ? ALA A 17 ILE A 20 AA2 2 LEU A 4 ? LEU A 11 ? LEU A 4 LEU A 11 AA2 3 ILE A 94 ? GLU A 101 ? ILE A 94 GLU A 101 AA2 4 PHE A 63 ? ARG A 68 ? PHE A 63 ARG A 68 AA2 5 LEU A 74 ? ALA A 76 ? LEU A 74 ALA A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ARG A 18 ? O ARG A 18 N LEU A 10 ? N LEU A 10 AA1 2 3 N LEU A 4 ? N LEU A 4 O PHE A 25 ? O PHE A 25 AA2 1 2 O ARG A 18 ? O ARG A 18 N LEU A 10 ? N LEU A 10 AA2 2 3 N TYR A 9 ? N TYR A 9 O ILE A 99 ? O ILE A 99 AA2 3 4 O LYS A 100 ? O LYS A 100 N GLN A 64 ? N GLN A 64 AA2 4 5 N TYR A 67 ? N TYR A 67 O VAL A 75 ? O VAL A 75 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 22 ? ? 57.12 75.29 2 1 PRO A 31 ? ? -72.97 -169.83 3 1 ALA A 39 ? ? -154.74 86.81 4 1 LYS A 91 ? ? -92.83 -65.41 5 1 ASP A 92 ? ? -105.36 -67.29 6 1 ASP A 93 ? ? -145.67 16.95 # _em_3d_fitting.entry_id 6TGY _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 2KKC _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 2KKC # _em_3d_reconstruction.entry_id 6TGY _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 51853 _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '50 mM TRIS (pH 7.5), 100 mM NaCl, 4 mM DTT' _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'p62-PB1 domain filament (L-type)' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6TGY _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6TGY _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 283 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6TGY _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6TGY _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ARG 106 ? A ARG 106 3 1 Y 1 A ARG 107 ? A ARG 107 4 1 Y 1 A ASP 108 ? A ASP 108 5 1 Y 1 A HIS 109 ? A HIS 109 6 1 Y 1 A ARG 110 ? A ARG 110 7 1 Y 1 A PRO 111 ? A PRO 111 8 1 Y 1 A PRO 112 ? A PRO 112 9 1 Y 1 A CYS 113 ? A CYS 113 10 1 Y 1 A ALA 114 ? A ALA 114 11 1 Y 1 A GLN 115 ? A GLN 115 12 1 Y 1 A GLU 116 ? A GLU 116 13 1 Y 1 A ALA 117 ? A ALA 117 14 1 Y 1 A PRO 118 ? A PRO 118 15 1 Y 1 A ARG 119 ? A ARG 119 16 1 Y 1 A ASN 120 ? A ASN 120 17 1 Y 1 A MET 121 ? A MET 121 18 1 Y 1 A VAL 122 ? A VAL 122 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 77.29 _em_helical_entity.axial_rise_per_subunit 4.787 _em_helical_entity.axial_symmetry C2 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 2277 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? SPRING ? 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? PHENIX ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Commission' ? PIEF-GA-2012-331285 1 'European Commission' ? PCOFUND-GA-2008-229597 2 'German Research Foundation' Germany EXC1074 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2KKC # _atom_sites.entry_id 6TGY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_