data_6UAL # _entry.id 6UAL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UAL pdb_00006ual 10.2210/pdb6ual/pdb WWPDB D_1000244283 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-16 2 'Structure model' 1 1 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_refine_hist.d_res_high' 4 2 'Structure model' '_refine_hist.d_res_low' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UAL _pdbx_database_status.recvd_initial_deposition_date 2019-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6U40 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Simmons, C.R.' 1 ? 'MacCulloch, T.' 2 ? 'Stephanopoulos, N.' 3 ? 'Yan, H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Simmons, C.R.' 1 ? primary 'MacCulloch, T.' 2 ? primary 'Stephanopoulos, N.' 3 ? primary 'Yan, H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (32-MER)' 9718.252 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3') ; 2146.449 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*TP*CP*AP*G)-3') ; 1520.036 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*TP*GP*GP*AP*AP*AP*CP*AP*GP*AP*CP*TP*GP*TP*CP*AP*GP*AP*TP*G)-3') ; 6207.042 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DA)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DT)(DG)(DC)(DT)(DC)(DA)(DT)(DC)(DT)(DG) (DA)(DC)(DA)(DG)(DT)(DC)(DT)(DG)(DT)(DT)(DT)(DC) ; CACTGACTCATGCTCATCTGACAGTCTGTTTC B ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DA)(DT)(DG)(DA)' AGCATGA C ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DA)(DG)' GTCAG D ? 4 polydeoxyribonucleotide no no '(DT)(DG)(DG)(DA)(DA)(DA)(DC)(DA)(DG)(DA)(DC)(DT)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DG)' TGGAAACAGACTGTCAGATG A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DT n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DC n 1 16 DA n 1 17 DT n 1 18 DC n 1 19 DT n 1 20 DG n 1 21 DA n 1 22 DC n 1 23 DA n 1 24 DG n 1 25 DT n 1 26 DC n 1 27 DT n 1 28 DG n 1 29 DT n 1 30 DT n 1 31 DT n 1 32 DC n 2 1 DA n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DA n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DA n 3 5 DG n 4 1 DT n 4 2 DG n 4 3 DG n 4 4 DA n 4 5 DA n 4 6 DA n 4 7 DC n 4 8 DA n 4 9 DG n 4 10 DA n 4 11 DC n 4 12 DT n 4 13 DG n 4 14 DT n 4 15 DC n 4 16 DA n 4 17 DG n 4 18 DA n 4 19 DT n 4 20 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 32 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? 3 1 sample 1 5 'synthetic construct' ? 32630 ? 4 1 sample 1 20 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DA 2 2 2 DA DA B . n A 1 3 DC 3 3 3 DC DC B . n A 1 4 DT 4 4 4 DT DT B . n A 1 5 DG 5 5 5 DG DG B . n A 1 6 DA 6 6 6 DA DA B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DT 8 8 8 DT DT B . n A 1 9 DC 9 9 9 DC DC B . n A 1 10 DA 10 10 10 DA DA B . n A 1 11 DT 11 11 11 DT DT B . n A 1 12 DG 12 12 12 DG DG B . n A 1 13 DC 13 13 13 DC DC B . n A 1 14 DT 14 14 14 DT DT B . n A 1 15 DC 15 15 15 DC DC B . n A 1 16 DA 16 16 16 DA DA B . n A 1 17 DT 17 17 17 DT DT B . n A 1 18 DC 18 18 18 DC DC B . n A 1 19 DT 19 19 19 DT DT B . n A 1 20 DG 20 20 20 DG DG B . n A 1 21 DA 21 21 21 DA DA B . n A 1 22 DC 22 22 22 DC DC B . n A 1 23 DA 23 23 23 DA DA B . n A 1 24 DG 24 24 24 DG DG B . n A 1 25 DT 25 25 25 DT DT B . n A 1 26 DC 26 26 26 DC DC B . n A 1 27 DT 27 27 27 DT DT B . n A 1 28 DG 28 28 28 DG DG B . n A 1 29 DT 29 29 29 DT DT B . n A 1 30 DT 30 30 30 DT DT B . n A 1 31 DT 31 31 31 DT DT B . n A 1 32 DC 32 32 32 DC DC B . n B 2 1 DA 1 19 19 DA DA C . n B 2 2 DG 2 20 20 DG DG C . n B 2 3 DC 3 21 21 DC DC C . n B 2 4 DA 4 22 22 DA DA C . n B 2 5 DT 5 23 23 DT DT C . n B 2 6 DG 6 24 24 DG DG C . n B 2 7 DA 7 25 25 DA DA C . n C 3 1 DG 1 26 26 DG DG D . n C 3 2 DT 2 27 27 DT DT D . n C 3 3 DC 3 28 28 DC DC D . n C 3 4 DA 4 29 29 DA DA D . n C 3 5 DG 5 30 30 DG DG D . n D 4 1 DT 1 1 1 DT DT A . n D 4 2 DG 2 2 2 DG DG A . n D 4 3 DG 3 3 3 DG DG A . n D 4 4 DA 4 4 4 DA DA A . n D 4 5 DA 5 5 5 DA DA A . n D 4 6 DA 6 6 6 DA DA A . n D 4 7 DC 7 7 7 DC DC A . n D 4 8 DA 8 8 8 DA DA A . n D 4 9 DG 9 9 9 DG DG A . n D 4 10 DA 10 10 10 DA DA A . n D 4 11 DC 11 11 11 DC DC A . n D 4 12 DT 12 12 12 DT DT A . n D 4 13 DG 13 13 13 DG DG A . n D 4 14 DT 14 14 14 DT DT A . n D 4 15 DC 15 15 15 DC DC A . n D 4 16 DA 16 16 16 DA DA A . n D 4 17 DG 17 17 17 DG DG A . n D 4 18 DA 18 18 18 DA DA A . n D 4 19 DT 19 19 19 DT DT A . n D 4 20 DG 20 20 20 DG DG A . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6UAL _cell.details ? _cell.formula_units_Z ? _cell.length_a 179.251 _cell.length_a_esd ? _cell.length_b 179.251 _cell.length_b_esd ? _cell.length_c 48.138 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UAL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 7.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 83.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details 'temperature gradient generated from 60 to 25 C at 0.3 degrees per hour' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.5 mL of 0.05 M cacodylate pH 7.0, 20 mM MgCl2, 1mM spermine, 1.0 mM cobalt hexamine, 15% ethanol was added to the reservoir with 2 uL added to the drop containing 4 uL of DNA stock. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal si (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6UAL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 4.514 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3195 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.700 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 4.623 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.104 _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 4.514 4.580 ? ? ? ? ? ? 111 73.000 ? ? ? ? 0.777 ? ? ? ? ? ? ? ? 7.100 ? 0.555 ? ? 0.833 0.294 ? 1 1 0.867 ? 4.580 4.660 ? ? ? ? ? ? 138 80.700 ? ? ? ? 0.835 ? ? ? ? ? ? ? ? 7.100 ? 0.505 ? ? 0.899 0.326 ? 2 1 0.819 ? 4.660 4.750 ? ? ? ? ? ? 148 82.200 ? ? ? ? 0.797 ? ? ? ? ? ? ? ? 7.700 ? 0.560 ? ? 0.850 0.290 ? 3 1 0.838 ? 4.750 4.850 ? ? ? ? ? ? 145 90.600 ? ? ? ? 0.639 ? ? ? ? ? ? ? ? 7.500 ? 0.539 ? ? 0.683 0.235 ? 4 1 0.882 ? 4.850 4.950 ? ? ? ? ? ? 155 93.900 ? ? ? ? 0.553 ? ? ? ? ? ? ? ? 8.000 ? 0.593 ? ? 0.589 0.197 ? 5 1 0.930 ? 4.950 5.070 ? ? ? ? ? ? 154 93.300 ? ? ? ? 0.462 ? ? ? ? ? ? ? ? 7.900 ? 0.679 ? ? 0.492 0.167 ? 6 1 0.962 ? 5.070 5.190 ? ? ? ? ? ? 170 95.000 ? ? ? ? 0.401 ? ? ? ? ? ? ? ? 8.000 ? 0.837 ? ? 0.427 0.146 ? 7 1 0.953 ? 5.190 5.330 ? ? ? ? ? ? 158 95.800 ? ? ? ? 0.337 ? ? ? ? ? ? ? ? 8.300 ? 1.219 ? ? 0.358 0.121 ? 8 1 0.970 ? 5.330 5.490 ? ? ? ? ? ? 173 100.000 ? ? ? ? 0.321 ? ? ? ? ? ? ? ? 8.800 ? 1.029 ? ? 0.341 0.113 ? 9 1 0.977 ? 5.490 5.670 ? ? ? ? ? ? 153 100.000 ? ? ? ? 0.292 ? ? ? ? ? ? ? ? 8.500 ? 1.329 ? ? 0.310 0.104 ? 10 1 0.972 ? 5.670 5.870 ? ? ? ? ? ? 179 100.000 ? ? ? ? 0.256 ? ? ? ? ? ? ? ? 8.400 ? 2.191 ? ? 0.273 0.093 ? 11 1 0.985 ? 5.870 6.110 ? ? ? ? ? ? 172 99.400 ? ? ? ? 0.237 ? ? ? ? ? ? ? ? 7.800 ? 2.099 ? ? 0.253 0.090 ? 12 1 0.976 ? 6.110 6.380 ? ? ? ? ? ? 162 100.000 ? ? ? ? 0.214 ? ? ? ? ? ? ? ? 8.300 ? 2.349 ? ? 0.228 0.078 ? 13 1 0.977 ? 6.380 6.720 ? ? ? ? ? ? 176 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 9.600 ? 2.386 ? ? 0.196 0.063 ? 14 1 0.994 ? 6.720 7.140 ? ? ? ? ? ? 161 100.000 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 8.800 ? 3.638 ? ? 0.160 0.053 ? 15 1 0.995 ? 7.140 7.690 ? ? ? ? ? ? 168 100.000 ? ? ? ? 0.140 ? ? ? ? ? ? ? ? 9.300 ? 6.026 ? ? 0.148 0.048 ? 16 1 0.991 ? 7.690 8.460 ? ? ? ? ? ? 168 100.000 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 10.800 ? 8.793 ? ? 0.128 0.039 ? 17 1 0.995 ? 8.460 9.670 ? ? ? ? ? ? 174 100.000 ? ? ? ? 0.114 ? ? ? ? ? ? ? ? 10.800 ? 12.733 ? ? 0.120 0.037 ? 18 1 0.996 ? 9.670 12.160 ? ? ? ? ? ? 166 100.000 ? ? ? ? 0.100 ? ? ? ? ? ? ? ? 10.500 ? 12.843 ? ? 0.105 0.033 ? 19 1 0.998 ? 12.160 50.000 ? ? ? ? ? ? 164 97.000 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 9.800 ? 16.818 ? ? 0.082 0.027 ? 20 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 589.290 _refine.B_iso_mean ? _refine.B_iso_min 112.720 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UAL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 4.514 _refine.ls_d_res_low 45.978 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3183 _refine.ls_number_reflns_R_free 158 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.0900 _refine.ls_percent_reflns_R_free 4.9600 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1993 _refine.ls_R_factor_R_free 0.2427 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1974 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.0300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 4.514 _refine_hist.d_res_low 45.978 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1306 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 64 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1306 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1462 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.679 ? 2248 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 254 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 64 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.541 ? 626 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 4.5141 _refine_ls_shell.d_res_low 45.9805 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.number_reflns_R_work 3025 _refine_ls_shell.percent_reflns_obs 94.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2427 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1974 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6UAL _struct.title 'A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UAL _struct_keywords.text 'Self-Assembly, DNA Nanotechnology, DNA Scaffold, Crystal Lattice, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6UAL 6UAL ? 1 ? 1 2 PDB 6UAL 6UAL ? 2 ? 1 3 PDB 6UAL 6UAL ? 3 ? 1 4 PDB 6UAL 6UAL ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UAL B 1 ? 32 ? 6UAL 1 ? 32 ? 1 32 2 2 6UAL C 1 ? 7 ? 6UAL 19 ? 25 ? 19 25 3 3 6UAL D 1 ? 5 ? 6UAL 26 ? 30 ? 26 30 4 4 6UAL A 1 ? 20 ? 6UAL 1 ? 20 ? 1 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 C DG 5 N2 ? ? B DC 3 D DG 30 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DG 5 N2 ? ? ? 1_555 C DA 4 N1 ? ? B DG 5 D DA 29 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog3 hydrog ? ? A DA 6 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 6 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 6 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 6 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 7 N3 ? ? ? 1_555 C DG 1 N2 ? ? B DC 7 D DG 26 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog6 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 8 C DA 25 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog7 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 9 C DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 10 C DT 23 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog9 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 11 C DA 22 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog10 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 12 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 12 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 12 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 13 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 13 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 13 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 14 C DA 19 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog17 hydrog ? ? A DC 15 N3 ? ? ? 1_555 D DG 20 N2 ? ? B DC 15 A DG 20 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog18 hydrog ? ? A DA 16 N1 ? ? ? 1_555 D DT 19 N3 ? ? B DA 16 A DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 16 N6 ? ? ? 1_555 D DT 19 O4 ? ? B DA 16 A DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 17 N3 ? ? ? 1_555 D DA 18 N1 ? ? B DT 17 A DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 17 O4 ? ? ? 1_555 D DA 18 N6 ? ? B DT 17 A DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 18 N3 ? ? ? 1_555 D DG 17 N2 ? ? B DC 18 A DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog23 hydrog ? ? A DT 19 N3 ? ? ? 1_555 D DA 16 N1 ? ? B DT 19 A DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 19 O4 ? ? ? 1_555 D DA 16 N6 ? ? B DT 19 A DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 20 N2 ? ? ? 1_555 D DC 15 N3 ? ? B DG 20 A DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog26 hydrog ? ? A DA 21 N1 ? ? ? 1_555 D DT 14 N3 ? ? B DA 21 A DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 21 N6 ? ? ? 1_555 D DT 14 O4 ? ? B DA 21 A DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 22 N3 ? ? ? 1_555 D DG 13 N1 ? ? B DC 22 A DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 22 N4 ? ? ? 1_555 D DG 13 O6 ? ? B DC 22 A DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 22 O2 ? ? ? 1_555 D DG 13 N2 ? ? B DC 22 A DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 24 N2 ? ? ? 1_555 D DC 11 N3 ? ? B DG 24 A DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? A DT 25 N3 ? ? ? 1_555 D DA 10 N1 ? ? B DT 25 A DA 10 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog33 hydrog ? ? A DC 26 N3 ? ? ? 1_555 D DG 9 N2 ? ? B DC 26 A DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog34 hydrog ? ? A DT 27 O4 ? ? ? 1_555 D DA 8 N6 ? ? B DT 27 A DA 8 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog35 hydrog ? ? A DG 28 N2 ? ? ? 1_555 D DC 7 N3 ? ? B DG 28 A DC 7 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog36 hydrog ? ? A DT 29 N3 ? ? ? 1_555 D DA 6 N1 ? ? B DT 29 A DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 29 O4 ? ? ? 1_555 D DA 6 N6 ? ? B DT 29 A DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 30 N3 ? ? ? 1_555 D DA 5 N1 ? ? B DT 30 A DA 5 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog39 hydrog ? ? A DT 31 O4 ? ? ? 1_555 D DA 4 N6 ? ? B DT 31 A DA 4 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog40 hydrog ? ? A DC 32 N3 ? ? ? 1_555 D DG 3 N1 ? ? B DC 32 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 32 N4 ? ? ? 1_555 D DG 3 O6 ? ? B DC 32 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 32 O2 ? ? ? 1_555 D DG 3 N2 ? ? B DC 32 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP1 _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 26 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O3'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 DG _pdbx_validate_symm_contact.auth_seq_id_2 20 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_444 _pdbx_validate_symm_contact.dist 2.05 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 21 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 21 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 21 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.62 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.32 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6UAL 'double helix' 6UAL 'a-form double helix' 6UAL 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 C DG 5 1_555 -1.490 0.673 -0.826 12.391 -11.990 14.922 1 B_DC3:DG30_D B 3 ? D 30 ? ? 1 1 A DG 5 1_555 C DA 4 1_555 2.160 2.132 2.460 10.663 -12.351 32.212 2 B_DG5:DA29_D B 5 ? D 29 ? ? ? 1 A DA 6 1_555 C DT 2 1_555 1.367 -0.438 -0.836 -2.333 -19.603 -1.457 3 B_DA6:DT27_D B 6 ? D 27 ? 20 1 1 A DC 7 1_555 C DG 1 1_555 -2.633 1.341 0.265 -13.527 -5.823 12.728 4 B_DC7:DG26_D B 7 ? D 26 ? ? ? 1 A DT 8 1_555 B DA 7 1_555 -1.607 0.471 0.922 12.384 8.921 -13.855 5 B_DT8:DA25_C B 8 ? C 25 ? ? ? 1 A DC 9 1_555 B DG 6 1_555 -0.233 0.638 0.379 4.702 -1.278 7.531 6 B_DC9:DG24_C B 9 ? C 24 ? ? 1 1 A DA 10 1_555 B DT 5 1_555 0.587 0.913 0.207 9.648 2.868 -9.569 7 B_DA10:DT23_C B 10 ? C 23 ? ? ? 1 A DT 11 1_555 B DA 4 1_555 0.092 0.754 0.285 12.344 -4.508 9.444 8 B_DT11:DA22_C B 11 ? C 22 ? ? ? 1 A DG 12 1_555 B DC 3 1_555 0.354 -0.076 1.122 0.865 -8.619 -0.139 9 B_DG12:DC21_C B 12 ? C 21 ? 19 1 1 A DC 13 1_555 B DG 2 1_555 0.672 -0.428 0.733 -13.921 -2.035 -15.201 10 B_DC13:DG20_C B 13 ? C 20 ? 19 1 1 A DT 14 1_555 B DA 1 1_555 -0.581 0.952 -0.146 -7.799 -1.732 -35.590 11 B_DT14:DA19_C B 14 ? C 19 ? ? ? 1 A DC 15 1_555 D DG 20 1_555 -1.456 0.897 0.507 12.556 -11.935 14.599 12 B_DC15:DG20_A B 15 ? A 20 ? ? 1 1 A DA 16 1_555 D DT 19 1_555 0.518 0.779 -0.293 -0.038 -24.164 -6.304 13 B_DA16:DT19_A B 16 ? A 19 ? 20 1 1 A DT 17 1_555 D DA 18 1_555 0.265 0.389 0.085 -19.237 -17.440 0.220 14 B_DT17:DA18_A B 17 ? A 18 ? 20 1 1 A DC 18 1_555 D DG 17 1_555 -2.545 0.363 -0.710 -30.737 -1.651 11.140 15 B_DC18:DG17_A B 18 ? A 17 ? ? ? 1 A DT 19 1_555 D DA 16 1_555 -1.518 0.521 -0.749 -10.911 -0.471 -9.002 16 B_DT19:DA16_A B 19 ? A 16 ? 20 1 1 A DG 20 1_555 D DC 15 1_555 1.320 0.733 0.576 4.335 -1.857 11.419 17 B_DG20:DC15_A B 20 ? A 15 ? ? 1 1 A DA 21 1_555 D DT 14 1_555 0.794 -0.194 0.229 2.356 -4.699 -9.527 18 B_DA21:DT14_A B 21 ? A 14 ? 20 1 1 A DC 22 1_555 D DG 13 1_555 0.127 -0.044 0.062 1.028 -1.036 -16.474 19 B_DC22:DG13_A B 22 ? A 13 ? 19 1 1 A DG 24 1_555 D DC 11 1_555 1.675 1.025 0.668 -4.847 -2.035 13.202 20 B_DG24:DC11_A B 24 ? A 11 ? ? 1 1 A DT 25 1_555 D DA 10 1_555 -1.775 0.500 0.782 -2.529 1.245 1.539 21 B_DT25:DA10_A B 25 ? A 10 ? ? ? 1 A DC 26 1_555 D DG 9 1_555 -2.217 0.889 -0.038 2.759 3.693 3.829 22 B_DC26:DG9_A B 26 ? A 9 ? ? ? 1 A DT 27 1_555 D DA 8 1_555 -1.255 0.738 -0.440 7.932 3.312 -12.066 23 B_DT27:DA8_A B 27 ? A 8 ? ? ? 1 A DG 28 1_555 D DC 7 1_555 2.228 1.231 0.538 11.504 -17.030 16.984 24 B_DG28:DC7_A B 28 ? A 7 ? ? ? 1 A DT 29 1_555 D DA 6 1_555 -1.487 0.435 -0.049 5.849 -18.365 -15.643 25 B_DT29:DA6_A B 29 ? A 6 ? 20 1 1 A DT 30 1_555 D DA 5 1_555 -1.707 0.559 -0.359 -3.723 -17.696 0.056 26 B_DT30:DA5_A B 30 ? A 5 ? ? ? 1 A DT 31 1_555 D DA 4 1_555 1.022 0.541 -0.765 -14.372 -10.379 -12.339 27 B_DT31:DA4_A B 31 ? A 4 ? ? ? 1 A DC 32 1_555 D DG 3 1_555 -1.001 0.341 0.368 -12.466 -5.444 -0.021 28 B_DC32:DG3_A B 32 ? A 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 C DG 5 1_555 A DG 5 1_555 C DA 4 1_555 -1.522 1.022 5.214 0.859 6.084 60.085 0.540 1.581 5.266 6.059 -0.855 60.369 1 BB_DC3DG5:DA29DG30_DD B 3 ? D 30 ? B 5 ? D 29 ? 1 A DG 5 1_555 C DA 4 1_555 A DA 6 1_555 C DT 2 1_555 -0.477 -0.401 4.980 -6.467 5.481 47.130 -1.159 -0.196 4.927 6.790 8.012 47.843 2 BB_DG5DA6:DT27DA29_DD B 5 ? D 29 ? B 6 ? D 27 ? 1 A DA 6 1_555 C DT 2 1_555 A DC 7 1_555 C DG 1 1_555 1.273 -0.950 2.986 -4.543 -1.766 28.927 -1.536 -3.388 2.809 -3.503 9.013 29.326 3 BB_DA6DC7:DG26DT27_DD B 6 ? D 27 ? B 7 ? D 26 ? 1 A DC 7 1_555 C DG 1 1_555 A DT 8 1_555 B DA 7 1_555 -3.352 -1.395 2.846 -8.343 -5.490 25.562 -1.486 4.858 3.935 -11.848 18.003 27.413 4 BB_DC7DT8:DA25DG26_CD B 7 ? D 26 ? B 8 ? C 25 ? 1 A DT 8 1_555 B DA 7 1_555 A DC 9 1_555 B DG 6 1_555 1.475 -0.716 3.474 3.647 4.818 35.411 -1.899 -1.834 3.480 7.851 -5.943 35.907 5 BB_DT8DC9:DG24DA25_CC B 8 ? C 25 ? B 9 ? C 24 ? 1 A DC 9 1_555 B DG 6 1_555 A DA 10 1_555 B DT 5 1_555 -0.734 -0.396 3.226 -0.908 -1.600 38.873 -0.402 0.993 3.255 -2.402 1.363 38.915 6 BB_DC9DA10:DT23DG24_CC B 9 ? C 24 ? B 10 ? C 23 ? 1 A DA 10 1_555 B DT 5 1_555 A DT 11 1_555 B DA 4 1_555 1.202 -1.595 3.356 -1.318 1.635 27.765 -3.707 -2.816 3.199 3.400 2.742 27.843 7 BB_DA10DT11:DA22DT23_CC B 10 ? C 23 ? B 11 ? C 22 ? 1 A DT 11 1_555 B DA 4 1_555 A DG 12 1_555 B DC 3 1_555 0.639 -0.428 3.492 1.241 -1.006 40.694 -0.495 -0.772 3.518 -1.446 -1.783 40.724 8 BB_DT11DG12:DC21DA22_CC B 11 ? C 22 ? B 12 ? C 21 ? 1 A DG 12 1_555 B DC 3 1_555 A DC 13 1_555 B DG 2 1_555 -0.741 -1.406 3.841 1.002 -1.779 34.971 -2.020 1.409 3.884 -2.958 -1.666 35.029 9 BB_DG12DC13:DG20DC21_CC B 12 ? C 21 ? B 13 ? C 20 ? 1 A DC 13 1_555 B DG 2 1_555 A DT 14 1_555 B DA 1 1_555 -1.266 -1.545 3.058 5.280 -4.512 30.502 -2.066 3.287 2.994 -8.439 -9.877 31.264 10 BB_DC13DT14:DA19DG20_CC B 13 ? C 20 ? B 14 ? C 19 ? 1 A DT 14 1_555 B DA 1 1_555 A DC 15 1_555 D DG 20 1_555 1.260 -0.642 2.868 -8.530 4.769 20.704 -2.949 -5.555 2.002 12.415 22.207 22.872 11 BB_DT14DC15:DG20DA19_AC B 14 ? C 19 ? B 15 ? A 20 ? 1 A DC 15 1_555 D DG 20 1_555 A DA 16 1_555 D DT 19 1_555 -1.800 -0.513 3.839 1.860 -1.149 43.266 -0.564 2.649 3.774 -1.557 -2.521 43.319 12 BB_DC15DA16:DT19DG20_AA B 15 ? A 20 ? B 16 ? A 19 ? 1 A DA 16 1_555 D DT 19 1_555 A DT 17 1_555 D DA 18 1_555 0.973 -1.504 3.816 -0.931 -1.476 27.347 -2.748 -2.324 3.856 -3.118 1.967 27.402 13 BB_DA16DT17:DA18DT19_AA B 16 ? A 19 ? B 17 ? A 18 ? 1 A DT 17 1_555 D DA 18 1_555 A DC 18 1_555 D DG 17 1_555 0.637 -0.033 3.224 5.674 4.344 34.367 -0.706 -0.206 3.256 7.255 -9.475 35.080 14 BB_DT17DC18:DG17DA18_AA B 17 ? A 18 ? B 18 ? A 17 ? 1 A DC 18 1_555 D DG 17 1_555 A DT 19 1_555 D DA 16 1_555 -2.028 -0.262 3.102 1.242 -3.321 38.190 -0.008 3.233 3.048 -5.062 -1.893 38.348 15 BB_DC18DT19:DA16DG17_AA B 18 ? A 17 ? B 19 ? A 16 ? 1 A DT 19 1_555 D DA 16 1_555 A DG 20 1_555 D DC 15 1_555 1.754 0.909 3.146 -4.739 4.596 51.142 0.748 -2.323 3.049 5.298 5.463 51.538 16 BB_DT19DG20:DC15DA16_AA B 19 ? A 16 ? B 20 ? A 15 ? 1 A DG 20 1_555 D DC 15 1_555 A DA 21 1_555 D DT 14 1_555 -1.064 -0.860 3.410 -0.533 0.102 27.842 -1.813 2.077 3.427 0.212 1.108 27.847 17 BB_DG20DA21:DT14DC15_AA B 20 ? A 15 ? B 21 ? A 14 ? 1 A DA 21 1_555 D DT 14 1_555 A DC 22 1_555 D DG 13 1_555 -0.282 -1.568 3.486 3.154 0.485 29.260 -3.196 1.269 3.412 0.957 -6.219 29.430 18 BB_DA21DC22:DG13DT14_AA B 21 ? A 14 ? B 22 ? A 13 ? 1 A DC 22 1_555 D DG 13 1_555 A DG 24 1_555 D DC 11 1_555 1.384 -2.717 6.531 0.528 1.598 76.848 -2.277 -1.083 6.490 1.285 -0.425 76.864 19 BB_DC22DG24:DC11DG13_AA B 22 ? A 13 ? B 24 ? A 11 ? 1 A DG 24 1_555 D DC 11 1_555 A DT 25 1_555 D DA 10 1_555 -0.400 -1.233 3.210 2.355 2.485 22.580 -3.962 1.814 3.001 6.300 -5.970 22.835 20 BB_DG24DT25:DA10DC11_AA B 24 ? A 11 ? B 25 ? A 10 ? 1 A DT 25 1_555 D DA 10 1_555 A DC 26 1_555 D DG 9 1_555 0.594 -0.005 3.227 2.784 4.725 42.269 -0.480 -0.539 3.239 6.519 -3.841 42.607 21 BB_DT25DC26:DG9DA10_AA B 25 ? A 10 ? B 26 ? A 9 ? 1 A DC 26 1_555 D DG 9 1_555 A DT 27 1_555 D DA 8 1_555 -1.046 -0.704 3.548 0.289 1.265 35.948 -1.334 1.738 3.514 2.048 -0.469 35.971 22 BB_DC26DT27:DA8DG9_AA B 26 ? A 9 ? B 27 ? A 8 ? 1 A DT 27 1_555 D DA 8 1_555 A DG 28 1_555 D DC 7 1_555 1.523 -0.709 3.150 -2.807 7.745 39.960 -1.811 -2.473 2.860 11.189 4.056 40.766 23 BB_DT27DG28:DC7DA8_AA B 27 ? A 8 ? B 28 ? A 7 ? 1 A DG 28 1_555 D DC 7 1_555 A DT 29 1_555 D DA 6 1_555 -1.052 -1.148 2.882 1.479 0.739 24.993 -2.836 2.805 2.781 1.705 -3.412 25.046 24 BB_DG28DT29:DA6DC7_AA B 28 ? A 7 ? B 29 ? A 6 ? 1 A DT 29 1_555 D DA 6 1_555 A DT 30 1_555 D DA 5 1_555 0.420 -0.855 3.466 1.377 1.382 31.931 -1.815 -0.499 3.442 2.508 -2.500 31.989 25 BB_DT29DT30:DA5DA6_AA B 29 ? A 6 ? B 30 ? A 5 ? 1 A DT 30 1_555 D DA 5 1_555 A DT 31 1_555 D DA 4 1_555 -0.883 -0.752 3.509 0.904 1.109 42.839 -1.147 1.305 3.471 1.518 -1.237 42.862 26 BB_DT30DT31:DA4DA5_AA B 30 ? A 5 ? B 31 ? A 4 ? 1 A DT 31 1_555 D DA 4 1_555 A DC 32 1_555 D DG 3 1_555 1.267 -1.332 3.385 -1.467 4.989 22.911 -4.923 -3.599 2.946 12.355 3.634 23.486 27 BB_DT31DC32:DG3DA4_AA B 31 ? A 4 ? B 32 ? A 3 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 1360635 1 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' R01GM104960 2 # _atom_sites.entry_id 6UAL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.005579 _atom_sites.fract_transf_matrix[1][2] 0.003221 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020774 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_