data_6UG6 # _entry.id 6UG6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.336 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6UG6 WWPDB D_1000244574 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'same protein in a different crystal form' _pdbx_database_related.db_id 6UG3 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UG6 _pdbx_database_status.recvd_initial_deposition_date 2019-09-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mulligan, V.K.' 1 0000-0001-6038-8922 'Kang, C.S.' 2 0000-0003-0959-0783 'Antselovich, I.' 3 0000-0002-2208-9937 'Sawaya, M.R.' 4 0000-0003-0874-9043 'Yeates, T.O.' 5 0000-0001-5709-9839 'Baker, D.' 6 0000-0001-7896-6217 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 29 _citation.language ? _citation.page_first 2433 _citation.page_last 2445 _citation.title 'Computational design of mixed chirality peptide macrocycles with internal symmetry.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3974 _citation.pdbx_database_id_PubMed 33058266 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mulligan, V.K.' 1 0000-0001-6038-8922 primary 'Kang, C.S.' 2 0000-0003-0959-0783 primary 'Sawaya, M.R.' 3 ? primary 'Rettie, S.' 4 ? primary 'Li, X.' 5 ? primary 'Antselovich, I.' 6 ? primary 'Craven, T.W.' 7 ? primary 'Watkins, A.M.' 8 ? primary 'Labonte, J.W.' 9 ? primary 'DiMaio, F.' 10 ? primary 'Yeates, T.O.' 11 0000-0001-5709-9839 primary 'Baker, D.' 12 ? # _cell.angle_alpha 109.499 _cell.angle_alpha_esd ? _cell.angle_beta 108.863 _cell.angle_beta_esd ? _cell.angle_gamma 107.911 _cell.angle_gamma_esd ? _cell.entry_id 6UG6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.530 _cell.length_a_esd ? _cell.length_b 29.960 _cell.length_b_esd ? _cell.length_c 30.100 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'C3-1, Sporty, crystal form 2' 1423.597 4 ? ? ? ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 8 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 6 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 7 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'PR(DVA)DPR(DVA)DPR(DVA)D' _entity_poly.pdbx_seq_one_letter_code_can PRVDPRVDPRVD _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 DVA n 1 4 ASP n 1 5 PRO n 1 6 ARG n 1 7 DVA n 1 8 ASP n 1 9 PRO n 1 10 ARG n 1 11 DVA n 1 12 ASP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'ab initio design' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UG6 _struct_ref.pdbx_db_accession 6UG6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UG6 A 1 ? 12 ? 6UG6 1 ? 12 ? 1 12 2 1 6UG6 B 1 ? 12 ? 6UG6 1 ? 12 ? 1 12 3 1 6UG6 C 1 ? 12 ? 6UG6 1 ? 12 ? 1 12 4 1 6UG6 D 1 ? 12 ? 6UG6 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UG6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 31.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.09 M sodium nitrate, 0.09 M Sodium phosphate dibasic, 0.09 M ammonium sulfate, 0.1 M HEPES, 0.1M MOPS pH 7.5, 12.5% v/v MPD, 12.5% PEG 1000, 12.5% PEG 3350 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-03-22 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 9.781 _reflns.entry_id 6UG6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.100 _reflns.d_resolution_low 24.992 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28588 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.511 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.920 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.156 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.062 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.100 1.130 ? 3.580 ? ? ? ? 1633 68.400 ? ? ? ? 0.156 ? ? ? ? ? ? ? ? 3.122 ? ? ? ? 0.190 ? ? 1 1 0.992 ? 1.130 1.160 ? 4.000 ? ? ? ? 1919 82.900 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? 3.404 ? ? ? ? 0.194 ? ? 2 1 0.989 ? 1.160 1.190 ? 4.380 ? ? ? ? 2007 87.900 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 3.455 ? ? ? ? 0.168 ? ? 3 1 0.993 ? 1.190 1.230 ? 4.720 ? ? ? ? 1906 88.200 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 3.381 ? ? ? ? 0.147 ? ? 4 1 0.993 ? 1.230 1.270 ? 4.860 ? ? ? ? 1877 89.300 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 3.532 ? ? ? ? 0.146 ? ? 5 1 0.994 ? 1.270 1.310 ? 4.780 ? ? ? ? 1898 90.600 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 3.305 ? ? ? ? 0.145 ? ? 6 1 0.992 ? 1.310 1.360 ? 5.290 ? ? ? ? 1784 90.500 ? ? ? ? 0.111 ? ? ? ? ? ? ? ? 3.515 ? ? ? ? 0.132 ? ? 7 1 0.993 ? 1.360 1.420 ? 5.990 ? ? ? ? 1727 91.900 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? 3.676 ? ? ? ? 0.119 ? ? 8 1 0.994 ? 1.420 1.480 ? 6.360 ? ? ? ? 1680 91.500 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 3.608 ? ? ? ? 0.105 ? ? 9 1 0.996 ? 1.480 1.560 ? 7.070 ? ? ? ? 1592 92.100 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 3.609 ? ? ? ? 0.093 ? ? 10 1 0.996 ? 1.560 1.640 ? 7.420 ? ? ? ? 1531 90.800 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 3.601 ? ? ? ? 0.083 ? ? 11 1 0.996 ? 1.640 1.740 ? 8.020 ? ? ? ? 1411 90.700 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 3.391 ? ? ? ? 0.074 ? ? 12 1 0.997 ? 1.740 1.860 ? 8.620 ? ? ? ? 1343 91.500 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 3.554 ? ? ? ? 0.062 ? ? 13 1 0.998 ? 1.860 2.010 ? 9.530 ? ? ? ? 1306 93.400 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 3.760 ? ? ? ? 0.056 ? ? 14 1 0.998 ? 2.010 2.200 ? 10.850 ? ? ? ? 1176 93.600 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 3.697 ? ? ? ? 0.051 ? ? 15 1 0.997 ? 2.200 2.460 ? 11.120 ? ? ? ? 1065 93.800 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 3.681 ? ? ? ? 0.045 ? ? 16 1 0.998 ? 2.460 2.840 ? 12.350 ? ? ? ? 956 93.700 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 3.644 ? ? ? ? 0.045 ? ? 17 1 0.999 ? 2.840 3.480 ? 12.400 ? ? ? ? 784 92.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 3.332 ? ? ? ? 0.042 ? ? 18 1 0.998 ? 3.480 4.920 ? 13.730 ? ? ? ? 647 96.600 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 3.747 ? ? ? ? 0.036 ? ? 19 1 0.999 ? 4.920 24.992 ? 14.430 ? ? ? ? 346 95.800 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 3.656 ? ? ? ? 0.040 ? ? 20 1 0.998 ? # _refine.aniso_B[1][1] -0.069 _refine.aniso_B[1][2] -0.348 _refine.aniso_B[1][3] 0.024 _refine.aniso_B[2][2] -0.309 _refine.aniso_B[2][3] 0.049 _refine.aniso_B[3][3] 0.267 _refine.B_iso_max ? _refine.B_iso_mean 8.572 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.984 _refine.correlation_coeff_Fo_to_Fc_free 0.973 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UG6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.100 _refine.ls_d_res_low 24.992 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28587 _refine.ls_number_reflns_R_free 2859 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 89.393 _refine.ls_percent_reflns_R_free 10.001 _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2137 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1801 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.036 _refine.pdbx_overall_ESU_R_Free 0.038 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.100 _refine_hist.d_res_low 24.992 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 543 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 396 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 105 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.013 547 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 597 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.685 1.803 760 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.543 1.604 1335 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.643 5.000 52 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 24.413 17.368 38 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.250 15.000 50 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 11.919 15.000 12 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.097 0.200 65 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 474 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 98 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.289 0.200 58 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.210 0.200 427 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.161 0.200 216 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.078 0.200 307 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.183 0.200 23 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.407 0.200 3 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.153 0.200 15 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.110 0.200 133 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.150 0.200 22 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.511 0.420 196 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.504 0.420 195 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 0.586 0.642 246 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 0.585 0.641 247 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.002 0.889 351 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.999 0.891 352 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.875 1.319 512 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.872 1.321 513 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 1.892 6.493 439 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 1.750 6.372 436 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 1.218 3.000 1144 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 0.142 0.050 347 ? r_ncsr_local_group_1 ? ? 'X-RAY DIFFRACTION' ? 0.189 0.050 337 ? r_ncsr_local_group_2 ? ? 'X-RAY DIFFRACTION' ? 0.141 0.050 347 ? r_ncsr_local_group_3 ? ? 'X-RAY DIFFRACTION' ? 0.165 0.050 305 ? r_ncsr_local_group_4 ? ? 'X-RAY DIFFRACTION' ? 0.005 0.050 325 ? r_ncsr_local_group_5 ? ? 'X-RAY DIFFRACTION' ? 0.175 0.050 334 ? r_ncsr_local_group_6 ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.100 1.129 2379 . 164 1469 68.6423 . 0.242 . 0.246 . 0.241 . . . . . 0.219 20 . 0.980 0.976 'X-RAY DIFFRACTION' 1.129 1.159 2285 . 191 1718 83.5449 . 0.214 . 0.240 . 0.212 . . . . . 0.196 20 . 0.981 0.976 'X-RAY DIFFRACTION' 1.159 1.193 2277 . 200 1804 88.0105 . 0.191 . 0.241 . 0.186 . . . . . 0.176 20 . 0.986 0.975 'X-RAY DIFFRACTION' 1.193 1.230 2160 . 191 1718 88.3796 . 0.188 . 0.213 . 0.185 . . . . . 0.177 20 . 0.986 0.979 'X-RAY DIFFRACTION' 1.230 1.270 2078 . 187 1680 89.8460 . 0.186 . 0.188 . 0.186 . . . . . 0.178 20 . 0.986 0.986 'X-RAY DIFFRACTION' 1.270 1.314 2075 . 189 1703 91.1807 . 0.194 . 0.221 . 0.191 . . . . . 0.180 20 . 0.983 0.976 'X-RAY DIFFRACTION' 1.314 1.364 1969 . 179 1609 90.8075 . 0.177 . 0.216 . 0.173 . . . . . 0.166 20 . 0.987 0.980 'X-RAY DIFFRACTION' 1.364 1.419 1860 . 171 1539 91.9355 . 0.162 . 0.189 . 0.159 . . . . . 0.156 20 . 0.989 0.986 'X-RAY DIFFRACTION' 1.419 1.482 1832 . 169 1521 92.2489 . 0.157 . 0.214 . 0.152 . . . . . 0.158 20 . 0.990 0.979 'X-RAY DIFFRACTION' 1.482 1.554 1718 . 158 1428 92.3166 . 0.150 . 0.170 . 0.147 . . . . . 0.154 20 . 0.991 0.986 'X-RAY DIFFRACTION' 1.554 1.638 1663 . 152 1371 91.5815 . 0.150 . 0.185 . 0.147 . . . . . 0.159 20 . 0.990 0.987 'X-RAY DIFFRACTION' 1.638 1.737 1549 . 142 1271 91.2201 . 0.161 . 0.179 . 0.159 . . . . . 0.178 20 . 0.988 0.985 'X-RAY DIFFRACTION' 1.737 1.856 1476 . 135 1221 91.8699 . 0.177 . 0.224 . 0.172 . . . . . 0.202 20 . 0.987 0.980 'X-RAY DIFFRACTION' 1.856 2.004 1372 . 129 1162 94.0962 . 0.151 . 0.160 . 0.150 . . . . . 0.195 20 . 0.991 0.991 'X-RAY DIFFRACTION' 2.004 2.194 1257 . 119 1066 94.2721 . 0.156 . 0.171 . 0.154 . . . . . 0.209 20 . 0.990 0.987 'X-RAY DIFFRACTION' 2.194 2.450 1124 . 106 957 94.5730 . 0.173 . 0.182 . 0.173 . . . . . 0.250 20 . 0.988 0.984 'X-RAY DIFFRACTION' 2.450 2.825 1010 . 96 858 94.4554 . 0.191 . 0.213 . 0.188 . . . . . 0.270 20 . 0.986 0.972 'X-RAY DIFFRACTION' 2.825 3.449 858 . 79 719 93.0070 . 0.198 . 0.221 . 0.196 . . . . . 0.314 20 . 0.983 0.975 'X-RAY DIFFRACTION' 3.449 4.831 656 . 65 579 98.1707 . 0.217 . 0.314 . 0.207 . . . . . 0.384 20 . 0.983 0.961 'X-RAY DIFFRACTION' 4.831 24.992 375 . 37 331 98.1333 . 0.280 . 0.351 . 0.274 . . . . . 0.610 20 . 0.979 0.967 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 'Chains A B' 1 2 'Chains A C' 1 3 'Chains A D' 1 4 'Chains B C' 1 5 'Chains B D' 1 6 'Chains C D' 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 6UG6 _struct.title 'C3 symmetric peptide design number 1, Sporty, crystal form 2' _struct.pdbx_descriptor 'C2-1, Zappy, crystal form 1' _struct.pdbx_model_details 'S2 symmetric cyclic peptide' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UG6 _struct_keywords.text 'cyclic peptide, 3-fold symmetric, L and D-amino acids, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 4 ? J N N 5 ? K N N 2 ? L N N 6 ? M N N 2 ? N N N 3 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 6 ? S N N 5 ? T N N 6 ? U N N 7 ? V N N 7 ? W N N 7 ? X N N 7 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 1 N ? ? ? 1_555 A ASP 12 C ? ? A PRO 1 A ASP 12 1_555 ? ? ? ? ? ? ? 1.333 sing ? covale2 covale both ? A ARG 2 C ? ? ? 1_555 A DVA 3 N ? ? A ARG 2 A DVA 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A DVA 3 C ? ? ? 1_555 A ASP 4 N ? ? A DVA 3 A ASP 4 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A ARG 6 C ? ? ? 1_555 A DVA 7 N ? ? A ARG 6 A DVA 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A DVA 7 C ? ? ? 1_555 A ASP 8 N ? ? A DVA 7 A ASP 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? A ARG 10 C ? ? ? 1_555 A DVA 11 N ? ? A ARG 10 A DVA 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A DVA 11 C ? ? ? 1_555 A ASP 12 N ? ? A DVA 11 A ASP 12 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale8 covale both ? B PRO 1 N ? ? ? 1_555 B ASP 12 C ? ? B PRO 1 B ASP 12 1_555 ? ? ? ? ? ? ? 1.336 sing ? covale9 covale both ? B ARG 2 C ? ? ? 1_555 B DVA 3 N ? ? B ARG 2 B DVA 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? B DVA 3 C ? ? ? 1_555 B ASP 4 N ? ? B DVA 3 B ASP 4 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? B ARG 6 C ? ? ? 1_555 B DVA 7 N ? ? B ARG 6 B DVA 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? B DVA 7 C ? ? ? 1_555 B ASP 8 N ? ? B DVA 7 B ASP 8 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? B ARG 10 C ? ? ? 1_555 B DVA 11 N ? ? B ARG 10 B DVA 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? B DVA 11 C ? ? ? 1_555 B ASP 12 N ? ? B DVA 11 B ASP 12 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? C PRO 1 N ? ? ? 1_555 C ASP 12 C ? ? C PRO 1 C ASP 12 1_555 ? ? ? ? ? ? ? 1.339 sing ? covale16 covale both ? C ARG 2 C ? ? ? 1_555 C DVA 3 N ? ? C ARG 2 C DVA 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? C DVA 3 C ? ? ? 1_555 C ASP 4 N ? ? C DVA 3 C ASP 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? C ARG 6 C ? ? ? 1_555 C DVA 7 N ? ? C ARG 6 C DVA 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale19 covale both ? C DVA 7 C ? ? ? 1_555 C ASP 8 N ? ? C DVA 7 C ASP 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale20 covale both ? C ARG 10 C ? ? ? 1_555 C DVA 11 N ? ? C ARG 10 C DVA 11 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? C DVA 11 C ? ? ? 1_555 C ASP 12 N ? ? C DVA 11 C ASP 12 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale22 covale both ? D PRO 1 N ? ? ? 1_555 D ASP 12 C ? ? D PRO 1 D ASP 12 1_555 ? ? ? ? ? ? ? 1.337 sing ? covale23 covale both ? D ARG 2 C ? ? ? 1_555 D DVA 3 N ? ? D ARG 2 D DVA 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale24 covale both ? D DVA 3 C ? ? ? 1_555 D ASP 4 N ? ? D DVA 3 D ASP 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale25 covale both ? D ARG 6 C ? ? ? 1_555 D DVA 7 N ? ? D ARG 6 D DVA 7 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale26 covale both ? D DVA 7 C ? ? ? 1_555 D ASP 8 N ? ? D DVA 7 D ASP 8 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale both ? D ARG 10 C ? ? ? 1_555 D DVA 11 N ? ? D ARG 10 D DVA 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale28 covale both ? D DVA 11 C ? ? ? 1_555 D ASP 12 N ? ? D DVA 11 D ASP 12 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A ASP 8 O ? ? ? 1_555 F NA . NA ? ? A ASP 8 A NA 102 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc2 metalc ? ? F NA . NA ? ? ? 1_555 U HOH . O ? ? A NA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.556 ? ? metalc3 metalc ? ? F NA . NA ? ? ? 1_555 U HOH . O ? ? A NA 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 U HOH . O ? ? A NA 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 W HOH . O ? ? A NA 102 C HOH 201 2_666 ? ? ? ? ? ? ? 2.716 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 W HOH . O ? ? A NA 102 C HOH 210 2_666 ? ? ? ? ? ? ? 3.097 ? ? metalc7 metalc ? ? U HOH . O ? ? ? 2_666 N NA . NA ? ? A HOH 212 C NA 104 1_555 ? ? ? ? ? ? ? 3.066 ? ? metalc8 metalc ? ? C ASP 4 O ? ? ? 1_555 N NA . NA ? ? C ASP 4 C NA 104 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc9 metalc ? ? N NA . NA ? ? ? 1_555 W HOH . O ? ? C NA 104 C HOH 206 1_555 ? ? ? ? ? ? ? 2.693 ? ? metalc10 metalc ? ? N NA . NA ? ? ? 1_555 W HOH . O ? ? C NA 104 C HOH 207 1_555 ? ? ? ? ? ? ? 2.580 ? ? metalc11 metalc ? ? N NA . NA ? ? ? 1_555 W HOH . O ? ? C NA 104 C HOH 208 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc12 metalc ? ? N NA . NA ? ? ? 1_555 W HOH . O ? ? C NA 104 C HOH 210 1_555 ? ? ? ? ? ? ? 2.661 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _atom_sites.entry_id 6UG6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.035051 _atom_sites.fract_transf_matrix[1][2] 0.011329 _atom_sites.fract_transf_matrix[1][3] 0.019878 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035078 _atom_sites.fract_transf_matrix[2][3] 0.019251 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040048 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 DVA 3 3 3 DVA DVA A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 DVA 7 7 7 DVA DVA A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 DVA 11 11 11 DVA DVA A . n A 1 12 ASP 12 12 12 ASP ASP A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 DVA 3 3 3 DVA DVA B . n B 1 4 ASP 4 4 4 ASP ASP B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 ARG 6 6 6 ARG ARG B . n B 1 7 DVA 7 7 7 DVA DVA B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 DVA 11 11 11 DVA DVA B . n B 1 12 ASP 12 12 12 ASP ASP B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 ARG 2 2 2 ARG ARG C . n C 1 3 DVA 3 3 3 DVA DVA C . n C 1 4 ASP 4 4 4 ASP ASP C . n C 1 5 PRO 5 5 5 PRO PRO C . n C 1 6 ARG 6 6 6 ARG ARG C . n C 1 7 DVA 7 7 7 DVA DVA C . n C 1 8 ASP 8 8 8 ASP ASP C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 DVA 11 11 11 DVA DVA C . n C 1 12 ASP 12 12 12 ASP ASP C . n D 1 1 PRO 1 1 1 PRO PRO D . n D 1 2 ARG 2 2 2 ARG ARG D . n D 1 3 DVA 3 3 3 DVA DVA D . n D 1 4 ASP 4 4 4 ASP ASP D . n D 1 5 PRO 5 5 5 PRO PRO D . n D 1 6 ARG 6 6 6 ARG ARG D . n D 1 7 DVA 7 7 7 DVA DVA D . n D 1 8 ASP 8 8 8 ASP ASP D . n D 1 9 PRO 9 9 9 PRO PRO D . n D 1 10 ARG 10 10 10 ARG ARG D . n D 1 11 DVA 11 11 11 DVA DVA D . n D 1 12 ASP 12 12 12 ASP ASP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MRD 1 101 13 MRD MRD A . F 3 NA 1 102 14 NA NA A . G 2 MRD 1 101 13 MRD MRD B . H 2 MRD 1 102 14 MRD MRD B . I 4 SO4 1 103 15 SO4 SO4 B . J 5 PO4 1 104 16 PO4 PO4 B . K 2 MRD 1 101 13 MRD MRD C . L 6 MPD 1 102 14 MPD MRD C . M 2 MRD 1 103 15 MRD MRD C . N 3 NA 1 104 17 NA NA C . O 2 MRD 1 101 13 MRD MRD D . P 2 MRD 1 102 14 MRD MRD D . Q 2 MRD 1 103 15 MRD MRD D . R 6 MPD 1 104 16 MPD MRD D . S 5 PO4 1 105 17 PO4 PO4 D . T 6 MPD 1 106 18 MPD MRD D . U 7 HOH 1 201 22 HOH HOH A . U 7 HOH 2 202 21 HOH HOH A . U 7 HOH 3 203 18 HOH HOH A . U 7 HOH 4 204 19 HOH HOH A . U 7 HOH 5 205 17 HOH HOH A . U 7 HOH 6 206 15 HOH HOH A . U 7 HOH 7 207 23 HOH HOH A . U 7 HOH 8 208 20 HOH HOH A . U 7 HOH 9 209 25 HOH HOH A . U 7 HOH 10 210 22 HOH HOH A . U 7 HOH 11 211 24 HOH HOH A . U 7 HOH 12 212 16 HOH HOH A . V 7 HOH 1 201 17 HOH HOH B . V 7 HOH 2 202 18 HOH HOH B . V 7 HOH 3 203 24 HOH HOH B . V 7 HOH 4 204 19 HOH HOH B . V 7 HOH 5 205 16 HOH HOH B . V 7 HOH 6 206 23 HOH HOH B . V 7 HOH 7 207 21 HOH HOH B . V 7 HOH 8 208 25 HOH HOH B . V 7 HOH 9 209 20 HOH HOH B . V 7 HOH 10 210 26 HOH HOH B . W 7 HOH 1 201 27 HOH HOH C . W 7 HOH 2 202 25 HOH HOH C . W 7 HOH 3 203 26 HOH HOH C . W 7 HOH 4 204 24 HOH HOH C . W 7 HOH 5 205 23 HOH HOH C . W 7 HOH 6 206 19 HOH HOH C . W 7 HOH 7 207 18 HOH HOH C . W 7 HOH 8 208 22 HOH HOH C . W 7 HOH 9 209 20 HOH HOH C . W 7 HOH 10 210 21 HOH HOH C . X 7 HOH 1 201 25 HOH HOH D . X 7 HOH 2 202 21 HOH HOH D . X 7 HOH 3 203 26 HOH HOH D . X 7 HOH 4 204 20 HOH HOH D . X 7 HOH 5 205 27 HOH HOH D . X 7 HOH 6 206 19 HOH HOH D . X 7 HOH 7 207 24 HOH HOH D . X 7 HOH 8 208 22 HOH HOH D . X 7 HOH 9 209 23 HOH HOH D . X 7 HOH 10 210 28 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 4 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F,U 2 1 B,G,H,I,J,V 3 1 C,K,L,M,N,W 4 1 D,O,P,Q,R,S,T,X # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 8 ? A ASP 8 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 206 ? 1_555 98.1 ? 2 O ? A ASP 8 ? A ASP 8 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 207 ? 1_555 97.4 ? 3 O ? U HOH . ? A HOH 206 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 207 ? 1_555 108.8 ? 4 O ? A ASP 8 ? A ASP 8 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 212 ? 1_555 123.0 ? 5 O ? U HOH . ? A HOH 206 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 212 ? 1_555 59.8 ? 6 O ? U HOH . ? A HOH 207 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? U HOH . ? A HOH 212 ? 1_555 53.7 ? 7 O ? A ASP 8 ? A ASP 8 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 201 ? 2_666 78.2 ? 8 O ? U HOH . ? A HOH 206 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 201 ? 2_666 170.9 ? 9 O ? U HOH . ? A HOH 207 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 201 ? 2_666 80.0 ? 10 O ? U HOH . ? A HOH 212 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 201 ? 2_666 129.2 ? 11 O ? A ASP 8 ? A ASP 8 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 210 ? 2_666 159.1 ? 12 O ? U HOH . ? A HOH 206 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 210 ? 2_666 86.7 ? 13 O ? U HOH . ? A HOH 207 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 210 ? 2_666 100.2 ? 14 O ? U HOH . ? A HOH 212 ? 1_555 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 210 ? 2_666 77.0 ? 15 O ? W HOH . ? C HOH 201 ? 2_666 NA ? F NA . ? A NA 102 ? 1_555 O ? W HOH . ? C HOH 210 ? 2_666 93.9 ? 16 O ? U HOH . ? A HOH 212 ? 2_666 NA ? N NA . ? C NA 104 ? 1_555 O ? C ASP 4 ? C ASP 4 ? 1_555 159.9 ? 17 O ? U HOH . ? A HOH 212 ? 2_666 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 206 ? 1_555 95.2 ? 18 O ? C ASP 4 ? C ASP 4 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 206 ? 1_555 78.0 ? 19 O ? U HOH . ? A HOH 212 ? 2_666 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 207 ? 1_555 87.1 ? 20 O ? C ASP 4 ? C ASP 4 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 207 ? 1_555 96.8 ? 21 O ? W HOH . ? C HOH 206 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 207 ? 1_555 170.5 ? 22 O ? U HOH . ? A HOH 212 ? 2_666 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 208 ? 1_555 100.9 ? 23 O ? C ASP 4 ? C ASP 4 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 208 ? 1_555 96.4 ? 24 O ? W HOH . ? C HOH 206 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 208 ? 1_555 79.5 ? 25 O ? W HOH . ? C HOH 207 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 208 ? 1_555 109.1 ? 26 O ? U HOH . ? A HOH 212 ? 2_666 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 210 ? 1_555 77.1 ? 27 O ? C ASP 4 ? C ASP 4 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 210 ? 1_555 121.9 ? 28 O ? W HOH . ? C HOH 206 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 210 ? 1_555 129.6 ? 29 O ? W HOH . ? C HOH 207 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 210 ? 1_555 59.8 ? 30 O ? W HOH . ? C HOH 208 ? 1_555 NA ? N NA . ? C NA 104 ? 1_555 O ? W HOH . ? C HOH 210 ? 1_555 54.4 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2020-12-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20190315 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20190315 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0253 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _pdbx_entry_details.entry_id 6UG6 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.28 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1 'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 'SODIUM ION' NA 4 'SULFATE ION' SO4 5 'PHOSPHATE ION' PO4 6 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 7 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 none ? 2 2 none ? 3 3 none ? 4 4 none ? #