data_6UP0 # _entry.id 6UP0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UP0 pdb_00006up0 10.2210/pdb6up0/pdb WWPDB D_1000244981 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6E8S _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UP0 _pdbx_database_status.recvd_initial_deposition_date 2019-10-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trachman, R.J.' 1 0000-0001-7459-2457 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary Rna RNARFU 2122 1469-9001 ? ? 27 ? 433 444 'Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET.' 2021 ? 10.1261/rna.078220.120 33376189 ? ? ? ? ? ? ? ? US ? ? 1 'Acta Crystallogr.,Sect.D' ABCRE6 ? 1399-0047 ? ? 68 ? 352 367 'Towards automated crystallographic structure refinement with phenix.refine.' 2012 ? 10.1107/S0907444912001308 22505256 ? ? ? ? ? ? ? ? US ? ? 2 'Acta Crystallogr.,Sect.D' ABCRE6 ? 1399-0047 ? ? 66 ? 213 221 'PHENIX: a comprehensive Python-based system for macromolecular structure solution.' 2010 ? 10.1107/S0907444909052925 20124702 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeng, S.C.Y.' 1 ? primary 'Trachman III, R.J.' 2 ? primary 'Weissenboeck, F.' 3 ? primary 'Truong, L.' 4 ? primary 'Link, K.A.' 5 ? primary 'Jepsen, M.D.E.' 6 ? primary 'Knutson, J.R.' 7 ? primary 'Andersen, E.S.' 8 ? primary ;Ferre-D'Amare, A.R. ; 9 ? primary 'Unrau, P.J.' 10 ? 1 'Afonine, P.V.' 11 ? 1 'Grosse-Kunstleve, R.W.' 12 ? 1 'Echols, N.' 13 ? 1 'Headd, J.J.' 14 ? 1 'Moriarty, N.W.' 15 ? 1 'Mustyakimov, M.' 16 ? 1 'Terwilliger, T.C.' 17 ? 1 'Urzhumtsev, A.' 18 ? 1 'Zwart, P.H.' 19 ? 1 'Adams, P.D.' 20 ? 2 'Adams, P.D.' 21 ? 2 'Afonine, P.V.' 22 ? 2 'Bunkoczi, G.' 23 ? 2 'Chen, V.B.' 24 ? 2 'Davis, I.W.' 25 ? 2 'Echols, N.' 26 ? 2 'Headd, J.J.' 27 ? 2 'Hung, L.W.' 28 ? 2 'Kapral, G.J.' 29 ? 2 'Grosse-Kunstleve, R.W.' 30 ? 2 'McCoy, A.J.' 31 ? 2 'Moriarty, N.W.' 32 ? 2 'Oeffner, R.' 33 ? 2 'Read, R.J.' 34 ? 2 'Richardson, D.C.' 35 ? 2 'Richardson, J.S.' 36 ? 2 'Terwilliger, T.C.' 37 ? 2 'Zwart, P.H.' 38 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6UP0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.284 _cell.length_a_esd ? _cell.length_b 66.921 _cell.length_b_esd ? _cell.length_c 76.628 _cell.length_c_esd ? _cell.volume 319393.746 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Mango-III fluorescent aptamer' 12323.325 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 3 non-polymer syn YO3-biotin 315.388 2 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUACGAAGGAAGGAUUGGUAUGUGGUAUAUUCGUAGC _entity_poly.pdbx_seq_one_letter_code_can GCUACGAAGGAAGGAUUGGUAUGUGGUAUAUUCGUAGC _entity_poly.pdbx_strand_id C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 A n 1 5 C n 1 6 G n 1 7 A n 1 8 A n 1 9 G n 1 10 G n 1 11 A n 1 12 A n 1 13 G n 1 14 G n 1 15 A n 1 16 U n 1 17 U n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 A n 1 29 U n 1 30 A n 1 31 U n 1 32 U n 1 33 C n 1 34 G n 1 35 U n 1 36 A n 1 37 G n 1 38 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 38 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UP0 _struct_ref.pdbx_db_accession 6UP0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UP0 C 1 ? 38 ? 6UP0 1 ? 38 ? 1 38 2 1 6UP0 D 1 ? 38 ? 6UP0 1 ? 38 ? 1 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 YO3 non-polymer . YO3-biotin '3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium' 'C21 H19 N2 O 1' 315.388 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UP0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, 0.08 M sodium chloride, 0.012 M potassium chloride, 0.02 M magnesium chloride, 0.012 M spermine, 5.5% sucrose, 31% MPD ; _exptl_crystal_grow.pdbx_pH_range 6.5-7.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-08-24 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'cryo-cooled double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 89.21 _reflns.entry_id 6UP0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.72 _reflns.d_resolution_low 50.41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16604 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_Rmerge_I_obs 1.0 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.34 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1351 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.34 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 80.47 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UP0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.80 _refine.ls_d_res_low 50.41 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15179 _refine.ls_number_reflns_R_free 1498 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.51 _refine.ls_percent_reflns_R_free 9.87 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1777 _refine.ls_R_factor_R_free 0.2146 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1736 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 6E8S' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.3404 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5295 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 50.41 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1688 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1632 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0060 ? 1882 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1975 ? 2926 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0514 ? 378 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0074 ? 82 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.2785 ? 910 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.80 2.89 . . 142 1226 98.77 . . . 0.4443 . 0.4431 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.89 2.99 . . 126 1283 99.23 . . . 0.4494 . 0.3571 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.99 3.11 . . 137 1207 99.63 . . . 0.3489 . 0.2744 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.11 3.26 . . 139 1267 99.79 . . . 0.2646 . 0.2184 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.26 3.43 . . 140 1235 99.71 . . . 0.2526 . 0.1836 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.43 3.64 . . 132 1244 99.28 . . . 0.1932 . 0.1897 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.64 3.92 . . 135 1246 99.57 . . . 0.2486 . 0.1864 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.92 4.32 . . 141 1230 99.85 . . . 0.2006 . 0.1389 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.32 4.94 . . 139 1245 99.93 . . . 0.1655 . 0.1325 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.94 6.22 . . 135 1256 99.86 . . . 0.1792 . 0.1324 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.22 50.41 . . 132 1242 99.06 . . . 0.1914 . 0.1675 . . . . . . . . . . . # loop_ _struct_ncs_dom.id _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.details 1 1 ? 2 1 ? # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A G 1 . A C 38 . C G 1 C C 38 ? ;chain 'C' ; 1 2 2 B G 1 . B C 38 . D G 1 D C 38 ? ;chain 'D' ; # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 6UP0 _struct.title 'Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UP0 _struct_keywords.text 'RNA, fluorescent, aptamer' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 9 O6 ? ? ? 1_555 G K . K ? ? C G 9 C K 105 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc2 metalc ? ? A G 10 O6 ? ? ? 1_555 G K . K ? ? C G 10 C K 105 1_555 ? ? ? ? ? ? ? 2.675 ? ? metalc3 metalc ? ? A A 12 OP1 ? ? ? 1_555 C MG . MG ? ? C A 12 C MG 101 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc4 metalc ? ? A G 13 O6 ? ? ? 1_555 G K . K ? ? C G 13 C K 105 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc5 metalc ? ? A G 14 O6 ? ? ? 1_555 G K . K ? ? C G 14 C K 105 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc6 metalc ? ? A U 16 OP2 ? ? ? 1_555 E MG . MG ? ? C U 16 C MG 103 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc7 metalc ? ? A U 16 OP2 ? ? ? 1_555 I MG . MG ? ? C U 16 D MG 102 2_455 ? ? ? ? ? ? ? 2.593 ? ? metalc8 metalc ? ? A G 18 O6 ? ? ? 1_555 G K . K ? ? C G 18 C K 105 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc9 metalc ? ? A G 19 O6 ? ? ? 1_555 G K . K ? ? C G 19 C K 105 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc10 metalc ? ? A A 21 OP1 ? ? ? 1_555 D MG . MG ? ? C A 21 C MG 102 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc11 metalc ? ? A A 21 OP1 ? ? ? 1_555 J MG . MG ? ? C A 21 D MG 103 2_455 ? ? ? ? ? ? ? 2.271 ? ? metalc12 metalc ? ? A G 23 O6 ? ? ? 1_555 G K . K ? ? C G 23 C K 105 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc13 metalc ? ? A G 25 O6 ? ? ? 1_555 G K . K ? ? C G 25 C K 105 1_555 ? ? ? ? ? ? ? 2.783 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 2_454 B U 16 OP2 ? ? C MG 102 D U 16 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 2_454 B A 21 OP1 ? ? C MG 103 D A 21 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc16 metalc ? ? B G 9 O6 ? ? ? 1_555 L K . K ? ? D G 9 D K 105 1_555 ? ? ? ? ? ? ? 2.676 ? ? metalc17 metalc ? ? B G 10 O6 ? ? ? 1_555 L K . K ? ? D G 10 D K 105 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc18 metalc ? ? B A 12 OP1 ? ? ? 1_555 H MG . MG ? ? D A 12 D MG 101 1_555 ? ? ? ? ? ? ? 2.989 ? ? metalc19 metalc ? ? B G 13 O6 ? ? ? 1_555 L K . K ? ? D G 13 D K 105 1_555 ? ? ? ? ? ? ? 2.720 ? ? metalc20 metalc ? ? B G 14 O6 ? ? ? 1_555 L K . K ? ? D G 14 D K 105 1_555 ? ? ? ? ? ? ? 2.803 ? ? metalc21 metalc ? ? B U 16 OP2 ? ? ? 1_555 J MG . MG ? ? D U 16 D MG 103 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc22 metalc ? ? B G 18 O6 ? ? ? 1_555 L K . K ? ? D G 18 D K 105 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc23 metalc ? ? B G 19 O6 ? ? ? 1_555 L K . K ? ? D G 19 D K 105 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc24 metalc ? ? B A 21 OP1 ? ? ? 1_555 I MG . MG ? ? D A 21 D MG 102 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc25 metalc ? ? B G 23 O6 ? ? ? 1_555 L K . K ? ? D G 23 D K 105 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc26 metalc ? ? B G 25 O6 ? ? ? 1_555 L K . K ? ? D G 25 D K 105 1_555 ? ? ? ? ? ? ? 2.827 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 38 N3 ? ? C G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 38 O2 ? ? C G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 38 N4 ? ? C G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 37 N1 ? ? C C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 37 O6 ? ? C C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 37 N2 ? ? C C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 36 N1 ? ? C U 3 C A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 36 N6 ? ? C U 3 C A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 35 N3 ? ? C A 4 C U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 35 O4 ? ? C A 4 C U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 34 N1 ? ? C C 5 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 34 O6 ? ? C C 5 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 34 N2 ? ? C C 5 C G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 33 N3 ? ? C G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 33 O2 ? ? C G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 33 N4 ? ? C G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 32 N3 ? ? C A 7 C U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 32 O4 ? ? C A 7 C U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 31 N3 ? ? C A 8 C U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 31 O4 ? ? C A 8 C U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 13 O6 ? ? C G 9 C G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 13 N7 ? ? C G 9 C G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N7 ? ? ? 1_555 A G 25 N2 ? ? C G 9 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A G 25 N1 ? ? C G 9 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 14 O6 ? ? C G 10 C G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 14 N7 ? ? C G 10 C G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 23 N2 ? ? C G 10 C G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 23 N1 ? ? C G 10 C G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 24 O4 ? ? C A 12 C U 24 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog30 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 31 O2 ? ? C A 12 C U 31 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog31 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 18 O6 ? ? C G 13 C G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 18 N7 ? ? C G 13 C G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A G 14 N1 ? ? ? 1_555 A G 19 O6 ? ? C G 14 C G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A G 14 N2 ? ? ? 1_555 A G 19 N7 ? ? C G 14 C G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 22 N3 ? ? C A 15 C U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 22 O2 ? ? C A 15 C U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 25 O6 ? ? C G 18 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 25 N7 ? ? C G 18 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 23 O6 ? ? C G 19 C G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 23 N7 ? ? C G 19 C G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 25 O6 ? ? C G 19 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 25 N7 ? ? C G 19 C G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? A U 20 N3 ? ? ? 1_555 A U 27 O2 ? ? C U 20 C U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog44 hydrog ? ? A U 20 O2 ? ? ? 1_555 A U 27 N3 ? ? C U 20 C U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog45 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 28 N7 ? ? C A 21 C A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog46 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 28 N6 ? ? C A 21 C A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog47 hydrog ? ? A U 24 O2 ? ? ? 1_555 A A 30 N6 ? ? C U 24 C A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog48 hydrog ? ? A G 26 N2 ? ? ? 1_555 A U 29 O4 ? ? C G 26 C U 29 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog49 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 38 N3 ? ? D G 1 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 38 O2 ? ? D G 1 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 38 N4 ? ? D G 1 D C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 37 N1 ? ? D C 2 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 37 O6 ? ? D C 2 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 37 N2 ? ? D C 2 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 36 N1 ? ? D U 3 D A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 36 N6 ? ? D U 3 D A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 35 N3 ? ? D A 4 D U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 35 O4 ? ? D A 4 D U 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 34 N1 ? ? D C 5 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 34 O6 ? ? D C 5 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 34 N2 ? ? D C 5 D G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 33 N3 ? ? D G 6 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 33 O2 ? ? D G 6 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 33 N4 ? ? D G 6 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 32 N3 ? ? D A 7 D U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 32 O4 ? ? D A 7 D U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 31 N3 ? ? D A 8 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 31 O4 ? ? D A 8 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 13 O6 ? ? D G 9 D G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 13 N7 ? ? D G 9 D G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? B G 9 N7 ? ? ? 1_555 B G 25 N2 ? ? D G 9 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog72 hydrog ? ? B G 9 O6 ? ? ? 1_555 B G 25 N1 ? ? D G 9 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog73 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 14 O6 ? ? D G 10 D G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog74 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 14 N7 ? ? D G 10 D G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog75 hydrog ? ? B G 10 N7 ? ? ? 1_555 B G 23 N2 ? ? D G 10 D G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog76 hydrog ? ? B G 10 O6 ? ? ? 1_555 B G 23 N1 ? ? D G 10 D G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog77 hydrog ? ? B A 12 N6 ? ? ? 1_555 B U 24 O4 ? ? D A 12 D U 24 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog78 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 18 O6 ? ? D G 13 D G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog79 hydrog ? ? B G 13 N2 ? ? ? 1_555 B G 18 N7 ? ? D G 13 D G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? B G 14 N1 ? ? ? 1_555 B G 19 O6 ? ? D G 14 D G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog81 hydrog ? ? B G 14 N2 ? ? ? 1_555 B G 19 N7 ? ? D G 14 D G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog82 hydrog ? ? B A 15 N1 ? ? ? 1_555 B U 22 N3 ? ? D A 15 D U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog83 hydrog ? ? B A 15 N6 ? ? ? 1_555 B U 22 O2 ? ? D A 15 D U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog84 hydrog ? ? B G 18 N1 ? ? ? 1_555 B G 25 O6 ? ? D G 18 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog85 hydrog ? ? B G 18 N2 ? ? ? 1_555 B G 25 N7 ? ? D G 18 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog86 hydrog ? ? B G 19 N1 ? ? ? 1_555 B G 23 O6 ? ? D G 19 D G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog87 hydrog ? ? B G 19 N2 ? ? ? 1_555 B G 23 N7 ? ? D G 19 D G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog88 hydrog ? ? B G 19 N1 ? ? ? 1_555 B G 25 O6 ? ? D G 19 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog89 hydrog ? ? B G 19 N2 ? ? ? 1_555 B G 25 N7 ? ? D G 19 D G 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog90 hydrog ? ? B U 20 N3 ? ? ? 1_555 B U 27 O2 ? ? D U 20 D U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog91 hydrog ? ? B U 20 O2 ? ? ? 1_555 B U 27 N3 ? ? D U 20 D U 27 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog92 hydrog ? ? B A 21 N6 ? ? ? 1_555 B A 28 N7 ? ? D A 21 D A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog93 hydrog ? ? B A 21 N7 ? ? ? 1_555 B A 28 N6 ? ? D A 21 D A 28 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog94 hydrog ? ? B U 24 O2 ? ? ? 1_555 B A 30 N6 ? ? D U 24 D A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog95 hydrog ? ? B G 26 N2 ? ? ? 1_555 B U 29 O4 ? ? D G 26 D U 29 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C MG 101 ? 3 'binding site for residue MG C 101' AC2 Software C MG 102 ? 3 'binding site for residue MG C 102' AC3 Software C MG 103 ? 3 'binding site for residue MG C 103' AC4 Software C YO3 104 ? 8 'binding site for residue YO3 C 104' AC5 Software C K 105 ? 8 'binding site for residue K C 105' AC6 Software D MG 101 ? 3 'binding site for residue MG D 101' AC7 Software D MG 102 ? 4 'binding site for residue MG D 102' AC8 Software D MG 103 ? 4 'binding site for residue MG D 103' AC9 Software D YO3 104 ? 8 'binding site for residue YO3 D 104' AD1 Software D K 105 ? 8 'binding site for residue K D 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 9 ? G C 9 . ? 1_555 ? 2 AC1 3 A A 12 ? A C 12 . ? 1_555 ? 3 AC1 3 U A 24 ? U C 24 . ? 1_555 ? 4 AC2 3 A A 21 ? A C 21 . ? 1_555 ? 5 AC2 3 U B 16 ? U D 16 . ? 2_455 ? 6 AC2 3 MG J . ? MG D 103 . ? 2_455 ? 7 AC3 3 U A 16 ? U C 16 . ? 1_555 ? 8 AC3 3 A B 21 ? A D 21 . ? 2_455 ? 9 AC3 3 MG I . ? MG D 102 . ? 2_455 ? 10 AC4 8 G A 10 ? G C 10 . ? 1_555 ? 11 AC4 8 G A 14 ? G C 14 . ? 1_555 ? 12 AC4 8 A A 15 ? A C 15 . ? 1_555 ? 13 AC4 8 U A 17 ? U C 17 . ? 1_555 ? 14 AC4 8 G A 19 ? G C 19 . ? 1_555 ? 15 AC4 8 A A 21 ? A C 21 . ? 1_555 ? 16 AC4 8 U A 22 ? U C 22 . ? 1_555 ? 17 AC4 8 G A 23 ? G C 23 . ? 1_555 ? 18 AC5 8 G A 9 ? G C 9 . ? 1_555 ? 19 AC5 8 G A 10 ? G C 10 . ? 1_555 ? 20 AC5 8 G A 13 ? G C 13 . ? 1_555 ? 21 AC5 8 G A 14 ? G C 14 . ? 1_555 ? 22 AC5 8 G A 18 ? G C 18 . ? 1_555 ? 23 AC5 8 G A 19 ? G C 19 . ? 1_555 ? 24 AC5 8 G A 23 ? G C 23 . ? 1_555 ? 25 AC5 8 G A 25 ? G C 25 . ? 1_555 ? 26 AC6 3 A B 8 ? A D 8 . ? 1_555 ? 27 AC6 3 A B 12 ? A D 12 . ? 1_555 ? 28 AC6 3 U B 24 ? U D 24 . ? 1_555 ? 29 AC7 4 A A 15 ? A C 15 . ? 2_454 ? 30 AC7 4 U A 16 ? U C 16 . ? 2_454 ? 31 AC7 4 MG E . ? MG C 103 . ? 2_454 ? 32 AC7 4 A B 21 ? A D 21 . ? 1_555 ? 33 AC8 4 A A 21 ? A C 21 . ? 2_454 ? 34 AC8 4 MG D . ? MG C 102 . ? 2_454 ? 35 AC8 4 A B 15 ? A D 15 . ? 1_555 ? 36 AC8 4 U B 16 ? U D 16 . ? 1_555 ? 37 AC9 8 G B 10 ? G D 10 . ? 1_555 ? 38 AC9 8 G B 14 ? G D 14 . ? 1_555 ? 39 AC9 8 A B 15 ? A D 15 . ? 1_555 ? 40 AC9 8 U B 17 ? U D 17 . ? 1_555 ? 41 AC9 8 G B 19 ? G D 19 . ? 1_555 ? 42 AC9 8 A B 21 ? A D 21 . ? 1_555 ? 43 AC9 8 U B 22 ? U D 22 . ? 1_555 ? 44 AC9 8 G B 23 ? G D 23 . ? 1_555 ? 45 AD1 8 G B 9 ? G D 9 . ? 1_555 ? 46 AD1 8 G B 10 ? G D 10 . ? 1_555 ? 47 AD1 8 G B 13 ? G D 13 . ? 1_555 ? 48 AD1 8 G B 14 ? G D 14 . ? 1_555 ? 49 AD1 8 G B 18 ? G D 18 . ? 1_555 ? 50 AD1 8 G B 19 ? G D 19 . ? 1_555 ? 51 AD1 8 G B 23 ? G D 23 . ? 1_555 ? 52 AD1 8 G B 25 ? G D 25 . ? 1_555 ? # _atom_sites.entry_id 6UP0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016055 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014943 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013050 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 4.54127 84.28225 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 2.59044 63.03566 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? 9.05267 ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G C . n A 1 2 C 2 2 2 C C C . n A 1 3 U 3 3 3 U U C . n A 1 4 A 4 4 4 A A C . n A 1 5 C 5 5 5 C C C . n A 1 6 G 6 6 6 G G C . n A 1 7 A 7 7 7 A A C . n A 1 8 A 8 8 8 A A C . n A 1 9 G 9 9 9 G G C . n A 1 10 G 10 10 10 G G C . n A 1 11 A 11 11 11 A A C . n A 1 12 A 12 12 12 A A C . n A 1 13 G 13 13 13 G G C . n A 1 14 G 14 14 14 G G C . n A 1 15 A 15 15 15 A A C . n A 1 16 U 16 16 16 U U C . n A 1 17 U 17 17 17 U U C . n A 1 18 G 18 18 18 G G C . n A 1 19 G 19 19 19 G G C . n A 1 20 U 20 20 20 U U C . n A 1 21 A 21 21 21 A A C . n A 1 22 U 22 22 22 U U C . n A 1 23 G 23 23 23 G G C . n A 1 24 U 24 24 24 U U C . n A 1 25 G 25 25 25 G G C . n A 1 26 G 26 26 26 G G C . n A 1 27 U 27 27 27 U U C . n A 1 28 A 28 28 28 A A C . n A 1 29 U 29 29 29 U U C . n A 1 30 A 30 30 30 A A C . n A 1 31 U 31 31 31 U U C . n A 1 32 U 32 32 32 U U C . n A 1 33 C 33 33 33 C C C . n A 1 34 G 34 34 34 G G C . n A 1 35 U 35 35 35 U U C . n A 1 36 A 36 36 36 A A C . n A 1 37 G 37 37 37 G G C . n A 1 38 C 38 38 38 C C C . n B 1 1 G 1 1 1 G G D . n B 1 2 C 2 2 2 C C D . n B 1 3 U 3 3 3 U U D . n B 1 4 A 4 4 4 A A D . n B 1 5 C 5 5 5 C C D . n B 1 6 G 6 6 6 G G D . n B 1 7 A 7 7 7 A A D . n B 1 8 A 8 8 8 A A D . n B 1 9 G 9 9 9 G G D . n B 1 10 G 10 10 10 G G D . n B 1 11 A 11 11 11 A A D . n B 1 12 A 12 12 12 A A D . n B 1 13 G 13 13 13 G G D . n B 1 14 G 14 14 14 G G D . n B 1 15 A 15 15 15 A A D . n B 1 16 U 16 16 16 U U D . n B 1 17 U 17 17 17 U U D . n B 1 18 G 18 18 18 G G D . n B 1 19 G 19 19 19 G G D . n B 1 20 U 20 20 20 U U D . n B 1 21 A 21 21 21 A A D . n B 1 22 U 22 22 22 U U D . n B 1 23 G 23 23 23 G G D . n B 1 24 U 24 24 24 U U D . n B 1 25 G 25 25 25 G G D . n B 1 26 G 26 26 26 G G D . n B 1 27 U 27 27 27 U U D . n B 1 28 A 28 28 28 A A D . n B 1 29 U 29 29 29 U U D . n B 1 30 A 30 30 30 A A D . n B 1 31 U 31 31 31 U U D . n B 1 32 U 32 32 32 U U D . n B 1 33 C 33 33 33 C C D . n B 1 34 G 34 34 34 G G D . n B 1 35 U 35 35 35 U U D . n B 1 36 A 36 36 36 A A D . n B 1 37 G 37 37 37 G G D . n B 1 38 C 38 38 38 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 2 MG MG C . D 2 MG 1 102 5 MG MG C . E 2 MG 1 103 6 MG MG C . F 3 YO3 1 104 1 YO3 YO3 C . G 4 K 1 105 6 K K C . H 2 MG 1 101 1 MG MG D . I 2 MG 1 102 3 MG MG D . J 2 MG 1 103 4 MG MG D . K 3 YO3 1 104 2 YO3 YO3 D . L 4 K 1 105 6 K K D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G 2 1 B,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 530 ? 1 MORE -26 ? 1 'SSA (A^2)' 6150 ? 2 'ABSA (A^2)' 530 ? 2 MORE -25 ? 2 'SSA (A^2)' 6160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 10 ? C G 10 ? 1_555 70.5 ? 2 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 13 ? C G 13 ? 1_555 68.0 ? 3 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 13 ? C G 13 ? 1_555 86.2 ? 4 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 14 ? C G 14 ? 1_555 132.0 ? 5 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 14 ? C G 14 ? 1_555 79.3 ? 6 O6 ? A G 13 ? C G 13 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 14 ? C G 14 ? 1_555 73.6 ? 7 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 18 ? C G 18 ? 1_555 111.8 ? 8 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 18 ? C G 18 ? 1_555 162.9 ? 9 O6 ? A G 13 ? C G 13 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 18 ? C G 18 ? 1_555 79.4 ? 10 O6 ? A G 14 ? C G 14 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 18 ? C G 18 ? 1_555 87.7 ? 11 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 19 ? C G 19 ? 1_555 152.6 ? 12 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 19 ? C G 19 ? 1_555 117.8 ? 13 O6 ? A G 13 ? C G 13 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 19 ? C G 19 ? 1_555 135.4 ? 14 O6 ? A G 14 ? C G 14 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 19 ? C G 19 ? 1_555 74.9 ? 15 O6 ? A G 18 ? C G 18 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 19 ? C G 19 ? 1_555 68.4 ? 16 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 89.9 ? 17 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 73.8 ? 18 O6 ? A G 13 ? C G 13 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 154.4 ? 19 O6 ? A G 14 ? C G 14 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 116.7 ? 20 O6 ? A G 18 ? C G 18 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 122.5 ? 21 O6 ? A G 19 ? C G 19 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 23 ? C G 23 ? 1_555 69.6 ? 22 O6 ? A G 9 ? C G 9 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 77.5 ? 23 O6 ? A G 10 ? C G 10 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 123.1 ? 24 O6 ? A G 13 ? C G 13 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 123.2 ? 25 O6 ? A G 14 ? C G 14 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 150.0 ? 26 O6 ? A G 18 ? C G 18 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 73.2 ? 27 O6 ? A G 19 ? C G 19 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 76.6 ? 28 O6 ? A G 23 ? C G 23 ? 1_555 K ? G K . ? C K 105 ? 1_555 O6 ? A G 25 ? C G 25 ? 1_555 60.2 ? 29 OP2 ? A U 16 ? C U 16 ? 1_555 MG ? E MG . ? C MG 103 ? 1_555 OP1 ? B A 21 ? D A 21 ? 1_555 121.4 ? 30 OP2 ? A U 16 ? C U 16 ? 1_555 MG ? I MG . ? D MG 102 ? 2_455 OP1 ? B A 21 ? D A 21 ? 1_555 154.2 ? 31 OP1 ? A A 21 ? C A 21 ? 1_555 MG ? D MG . ? C MG 102 ? 1_555 OP2 ? B U 16 ? D U 16 ? 1_555 45.3 ? 32 OP1 ? A A 21 ? C A 21 ? 1_555 MG ? J MG . ? D MG 103 ? 2_455 OP2 ? B U 16 ? D U 16 ? 1_555 68.7 ? 33 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 10 ? D G 10 ? 1_555 73.2 ? 34 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 13 ? D G 13 ? 1_555 76.8 ? 35 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 13 ? D G 13 ? 1_555 85.4 ? 36 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 14 ? D G 14 ? 1_555 135.3 ? 37 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 14 ? D G 14 ? 1_555 71.0 ? 38 O6 ? B G 13 ? D G 13 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 14 ? D G 14 ? 1_555 74.6 ? 39 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 18 ? D G 18 ? 1_555 117.6 ? 40 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 18 ? D G 18 ? 1_555 156.9 ? 41 O6 ? B G 13 ? D G 13 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 18 ? D G 18 ? 1_555 77.9 ? 42 O6 ? B G 14 ? D G 14 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 18 ? D G 18 ? 1_555 89.0 ? 43 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 19 ? D G 19 ? 1_555 148.4 ? 44 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 19 ? D G 19 ? 1_555 115.1 ? 45 O6 ? B G 13 ? D G 13 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 19 ? D G 19 ? 1_555 132.4 ? 46 O6 ? B G 14 ? D G 14 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 19 ? D G 19 ? 1_555 73.1 ? 47 O6 ? B G 18 ? D G 18 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 19 ? D G 19 ? 1_555 67.6 ? 48 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 79.5 ? 49 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 76.7 ? 50 O6 ? B G 13 ? D G 13 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 153.6 ? 51 O6 ? B G 14 ? D G 14 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 116.3 ? 52 O6 ? B G 18 ? D G 18 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 124.0 ? 53 O6 ? B G 19 ? D G 19 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 23 ? D G 23 ? 1_555 73.5 ? 54 O6 ? B G 9 ? D G 9 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 73.2 ? 55 O6 ? B G 10 ? D G 10 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 131.0 ? 56 O6 ? B G 13 ? D G 13 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 119.7 ? 57 O6 ? B G 14 ? D G 14 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 151.5 ? 58 O6 ? B G 18 ? D G 18 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 71.9 ? 59 O6 ? B G 19 ? D G 19 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 80.0 ? 60 O6 ? B G 23 ? D G 23 ? 1_555 K ? L K . ? D K 105 ? 1_555 O6 ? B G 25 ? D G 25 ? 1_555 62.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-21 2 'Structure model' 1 1 2021-05-26 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' 15 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 16 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 17 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 18 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 19 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 20 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 21 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 22 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3211 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6UP0 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 25 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 25 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 25 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.52 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.18 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 K K K N N 111 MG MG MG N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 YO3 C01 C N N 147 YO3 C03 C N N 148 YO3 C04 C N N 149 YO3 C05 C N N 150 YO3 C06 C N N 151 YO3 C07 C N N 152 YO3 C08 C N N 153 YO3 C09 C Y N 154 YO3 C11 C Y N 155 YO3 C12 C Y N 156 YO3 C13 C Y N 157 YO3 C14 C Y N 158 YO3 C15 C Y N 159 YO3 C16 C Y N 160 YO3 C18 C N N 161 YO3 C19 C Y N 162 YO3 C20 C Y N 163 YO3 C21 C Y N 164 YO3 C22 C Y N 165 YO3 C23 C Y N 166 YO3 C24 C Y N 167 YO3 N02 N N N 168 YO3 N17 N Y N 169 YO3 O10 O Y N 170 YO3 H1 H N N 171 YO3 H2 H N N 172 YO3 H3 H N N 173 YO3 H4 H N N 174 YO3 H5 H N N 175 YO3 H6 H N N 176 YO3 H7 H N N 177 YO3 H8 H N N 178 YO3 H10 H N N 179 YO3 H11 H N N 180 YO3 H12 H N N 181 YO3 H13 H N N 182 YO3 H14 H N N 183 YO3 H15 H N N 184 YO3 H16 H N N 185 YO3 H17 H N N 186 YO3 H18 H N N 187 YO3 H19 H N N 188 YO3 H20 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 YO3 C13 C14 doub Y N 151 YO3 C13 C12 sing Y N 152 YO3 C14 C15 sing Y N 153 YO3 C12 C11 doub Y N 154 YO3 C15 C16 doub Y N 155 YO3 C11 C16 sing Y N 156 YO3 C11 O10 sing Y N 157 YO3 C16 N17 sing Y N 158 YO3 O10 C09 sing Y N 159 YO3 N17 C18 sing N N 160 YO3 N17 C09 doub Y N 161 YO3 C09 C08 sing N N 162 YO3 C08 C07 doub N E 163 YO3 C07 C06 sing N N 164 YO3 C04 C03 doub N N 165 YO3 C04 C05 sing N N 166 YO3 C03 N02 sing N N 167 YO3 C06 C05 doub N E 168 YO3 C05 C19 sing N N 169 YO3 N02 C01 sing N N 170 YO3 N02 C24 sing N N 171 YO3 C19 C24 doub Y N 172 YO3 C19 C20 sing Y N 173 YO3 C24 C23 sing Y N 174 YO3 C20 C21 doub Y N 175 YO3 C23 C22 doub Y N 176 YO3 C21 C22 sing Y N 177 YO3 C01 H1 sing N N 178 YO3 C01 H2 sing N N 179 YO3 C01 H3 sing N N 180 YO3 C03 H4 sing N N 181 YO3 C04 H5 sing N N 182 YO3 C06 H6 sing N N 183 YO3 C07 H7 sing N N 184 YO3 C08 H8 sing N N 185 YO3 C12 H10 sing N N 186 YO3 C13 H11 sing N N 187 YO3 C14 H12 sing N N 188 YO3 C15 H13 sing N N 189 YO3 C18 H14 sing N N 190 YO3 C18 H15 sing N N 191 YO3 C18 H16 sing N N 192 YO3 C20 H17 sing N N 193 YO3 C21 H18 sing N N 194 YO3 C22 H19 sing N N 195 YO3 C23 H20 sing N N 196 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6UP0 'double helix' 6UP0 'a-form double helix' 6UP0 'parallel strands' 6UP0 'bulge loop' 6UP0 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 38 1_555 0.300 -0.152 0.383 1.660 -5.933 -1.752 1 C_G1:C38_C C 1 ? C 38 ? 19 1 1 A C 2 1_555 A G 37 1_555 0.078 -0.254 0.364 0.827 -11.109 1.271 2 C_C2:G37_C C 2 ? C 37 ? 19 1 1 A U 3 1_555 A A 36 1_555 0.039 -0.171 0.346 3.838 -7.160 3.952 3 C_U3:A36_C C 3 ? C 36 ? 20 1 1 A A 4 1_555 A U 35 1_555 0.179 -0.264 0.009 1.006 -9.683 6.452 4 C_A4:U35_C C 4 ? C 35 ? 20 1 1 A C 5 1_555 A G 34 1_555 0.407 -0.194 -0.052 6.463 -16.386 1.966 5 C_C5:G34_C C 5 ? C 34 ? 19 1 1 A G 6 1_555 A C 33 1_555 -0.383 -0.250 -0.153 -8.428 -17.025 0.322 6 C_G6:C33_C C 6 ? C 33 ? 19 1 1 A A 7 1_555 A U 32 1_555 -0.132 -0.316 0.478 -3.593 -10.251 -2.654 7 C_A7:U32_C C 7 ? C 32 ? 20 1 1 A A 8 1_555 A U 31 1_555 0.122 -0.248 0.562 7.658 -15.043 -3.684 8 C_A8:U31_C C 8 ? C 31 ? 20 1 1 A U 24 1_555 A A 12 1_555 1.630 2.775 0.484 11.041 13.338 -118.894 9 C_U24:A12_C C 24 ? C 12 ? ? ? 1 A G 9 1_555 A G 25 1_555 -1.610 -3.436 -1.528 32.618 0.652 88.398 10 C_G9:G25_C C 9 ? C 25 ? 6 3 1 A G 10 1_555 A G 23 1_555 -1.599 -3.092 -0.590 2.200 -7.070 92.158 11 C_G10:G23_C C 10 ? C 23 ? 6 3 1 A G 19 1_555 A G 14 1_555 -1.572 -3.552 0.091 5.401 8.533 89.121 12 C_G19:G14_C C 19 ? C 14 ? 6 3 1 A G 13 1_555 A G 18 1_555 1.846 3.294 0.197 -7.938 8.465 -88.497 13 C_G13:G18_C C 13 ? C 18 ? 6 3 1 A A 15 1_555 A U 22 1_555 0.455 0.941 -0.378 8.889 -4.799 175.515 14 C_A15:U22_C C 15 ? C 22 ? 21 2 1 A U 20 1_555 A U 27 1_555 2.399 3.571 0.025 20.420 4.623 172.040 15 C_U20:U27_C C 20 ? C 27 ? 13 2 1 A A 21 1_555 A A 28 1_555 -5.632 5.289 -0.298 -8.422 4.891 -176.016 16 C_A21:A28_C C 21 ? C 28 ? 2 8 1 A G 26 1_555 A U 29 1_555 3.708 3.579 0.266 -14.090 5.597 -76.776 17 C_G26:U29_C C 26 ? C 29 ? ? 1 1 B G 1 1_555 B C 38 1_555 -0.250 -0.273 0.335 -2.739 -6.580 -2.100 18 D_G1:C38_D D 1 ? D 38 ? 19 1 1 B C 2 1_555 B G 37 1_555 0.292 -0.323 0.378 -1.935 -12.664 -0.439 19 D_C2:G37_D D 2 ? D 37 ? 19 1 1 B U 3 1_555 B A 36 1_555 0.283 -0.467 0.386 -2.014 -4.291 0.339 20 D_U3:A36_D D 3 ? D 36 ? 20 1 1 B A 4 1_555 B U 35 1_555 0.107 -0.173 0.113 1.591 -10.430 10.222 21 D_A4:U35_D D 4 ? D 35 ? 20 1 1 B C 5 1_555 B G 34 1_555 0.016 -0.158 -0.261 7.531 -14.412 2.048 22 D_C5:G34_D D 5 ? D 34 ? 19 1 1 B G 6 1_555 B C 33 1_555 -0.194 -0.329 0.126 -6.544 -10.581 4.033 23 D_G6:C33_D D 6 ? D 33 ? 19 1 1 B A 7 1_555 B U 32 1_555 -0.196 -0.281 0.288 -5.626 -13.172 -1.944 24 D_A7:U32_D D 7 ? D 32 ? 20 1 1 B A 8 1_555 B U 31 1_555 -0.063 -0.244 0.747 7.675 -13.897 -3.119 25 D_A8:U31_D D 8 ? D 31 ? 20 1 1 B A 12 1_555 B U 24 1_555 -1.469 2.964 0.486 -8.492 14.662 -120.459 26 D_A12:U24_D D 12 ? D 24 ? ? ? 1 B G 9 1_555 B G 13 1_555 1.793 3.035 -0.175 7.617 0.638 -91.242 27 D_G9:G13_D D 9 ? D 13 ? 6 3 1 B G 10 1_555 B G 23 1_555 -1.778 -3.319 -0.578 -0.191 -9.771 88.487 28 D_G10:G23_D D 10 ? D 23 ? 6 3 1 B G 14 1_555 B G 19 1_555 1.760 3.291 0.024 -8.187 -7.657 -89.559 29 D_G14:G19_D D 14 ? D 19 ? 6 3 1 B G 25 1_555 B G 18 1_555 -1.659 -3.098 0.203 -1.146 -25.486 90.767 30 D_G25:G18_D D 25 ? D 18 ? 6 3 1 B A 15 1_555 B U 22 1_555 0.331 1.194 -0.393 8.633 -6.980 176.758 31 D_A15:U22_D D 15 ? D 22 ? 21 2 1 B U 20 1_555 B U 27 1_555 2.432 3.541 -0.107 15.772 1.944 174.637 32 D_U20:U27_D D 20 ? D 27 ? 13 2 1 B A 21 1_555 B A 28 1_555 -5.622 5.035 -0.046 -4.618 4.844 -176.558 33 D_A21:A28_D D 21 ? D 28 ? 2 8 1 B G 26 1_555 B U 29 1_555 3.682 3.447 0.063 -9.707 5.571 -75.176 34 D_G26:U29_D D 26 ? D 29 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 38 1_555 A C 2 1_555 A G 37 1_555 0.076 -1.610 3.164 0.017 2.426 32.798 -3.238 -0.131 3.040 4.290 -0.029 32.885 1 CC_G1C2:G37C38_CC C 1 ? C 38 ? C 2 ? C 37 ? 1 A C 2 1_555 A G 37 1_555 A U 3 1_555 A A 36 1_555 -0.138 -1.751 3.076 -2.349 4.135 29.237 -4.216 -0.180 2.809 8.123 4.614 29.613 2 CC_C2U3:A36G37_CC C 2 ? C 37 ? C 3 ? C 36 ? 1 A U 3 1_555 A A 36 1_555 A A 4 1_555 A U 35 1_555 -0.476 -1.311 3.051 0.658 11.685 34.008 -3.579 0.853 2.472 19.284 -1.087 35.909 3 CC_U3A4:U35A36_CC C 3 ? C 36 ? C 4 ? C 35 ? 1 A A 4 1_555 A U 35 1_555 A C 5 1_555 A G 34 1_555 -0.324 -1.174 3.038 -0.740 8.261 32.166 -3.284 0.458 2.669 14.609 1.308 33.191 4 CC_A4C5:G34U35_CC C 4 ? C 35 ? C 5 ? C 34 ? 1 A C 5 1_555 A G 34 1_555 A G 6 1_555 A C 33 1_555 0.044 -1.862 3.480 -0.294 13.118 26.240 -6.336 -0.147 2.305 26.864 0.603 29.286 5 CC_C5G6:C33G34_CC C 5 ? C 34 ? C 6 ? C 33 ? 1 A G 6 1_555 A C 33 1_555 A A 7 1_555 A U 32 1_555 -0.204 -1.335 2.976 -5.385 4.592 33.422 -2.920 -0.411 2.771 7.874 9.236 34.142 6 CC_G6A7:U32C33_CC C 6 ? C 33 ? C 7 ? C 32 ? 1 A A 7 1_555 A U 32 1_555 A A 8 1_555 A U 31 1_555 0.087 -1.158 2.939 3.076 3.510 34.356 -2.419 0.271 2.807 5.908 -5.177 34.662 7 CC_A7A8:U31U32_CC C 7 ? C 32 ? C 8 ? C 31 ? 1 A A 8 1_555 A U 31 1_555 A U 24 1_555 A A 12 1_555 -1.859 1.913 -4.140 91.720 114.563 146.811 1.400 0.580 -3.890 57.794 -46.270 170.628 8 CC_A8U24:A12U31_CC C 8 ? C 31 ? C 24 ? C 12 ? 1 A U 24 1_555 A A 12 1_555 A G 9 1_555 A G 25 1_555 -3.469 1.050 2.260 -13.970 -163.132 -163.491 -0.361 -1.749 2.343 81.649 -6.992 -177.672 9 CC_U24G9:G25A12_CC C 24 ? C 12 ? C 9 ? C 25 ? 1 A G 9 1_555 A G 25 1_555 A G 10 1_555 A G 23 1_555 -0.864 -1.111 2.716 8.878 -0.480 32.231 -1.869 2.678 2.415 -0.844 -15.623 33.404 10 CC_G9G10:G23G25_CC C 9 ? C 25 ? C 10 ? C 23 ? 1 A G 10 1_555 A G 23 1_555 A G 19 1_555 A G 14 1_555 -1.641 -3.353 -0.159 -11.447 10.660 178.090 -1.677 0.821 -0.161 5.331 5.724 178.108 11 CC_G10G19:G14G23_CC C 10 ? C 23 ? C 19 ? C 14 ? 1 A G 19 1_555 A G 14 1_555 A G 13 1_555 A G 18 1_555 0.520 0.596 -2.714 -10.036 -5.443 -28.409 -1.981 2.555 -2.255 10.567 -19.484 -30.573 12 CC_G19G13:G18G14_CC C 19 ? C 14 ? C 13 ? C 18 ? 1 A U 20 1_555 A U 27 1_555 A A 21 1_555 A A 28 1_555 -1.025 -0.935 3.657 -12.123 -8.199 -171.340 0.479 -0.529 3.643 4.111 -6.079 -171.411 13 CC_U20A21:A28U27_CC C 20 ? C 27 ? C 21 ? C 28 ? 1 A A 21 1_555 A A 28 1_555 A G 26 1_555 A U 29 1_555 2.191 -1.429 3.045 1.006 4.123 84.638 -1.149 -1.604 3.007 3.060 -0.747 84.725 14 CC_A21G26:U29A28_CC C 21 ? C 28 ? C 26 ? C 29 ? 1 B G 1 1_555 B C 38 1_555 B C 2 1_555 B G 37 1_555 -0.170 -1.559 3.265 -0.159 -0.920 33.988 -2.518 0.265 3.305 -1.573 0.272 34.000 15 DD_G1C2:G37C38_DD D 1 ? D 38 ? D 2 ? D 37 ? 1 B C 2 1_555 B G 37 1_555 B U 3 1_555 B A 36 1_555 -0.032 -1.648 3.125 -1.988 6.003 32.355 -3.836 -0.252 2.780 10.645 3.525 32.950 16 DD_C2U3:A36G37_DD D 2 ? D 37 ? D 3 ? D 36 ? 1 B U 3 1_555 B A 36 1_555 B A 4 1_555 B U 35 1_555 -0.152 -1.159 2.847 1.165 9.204 33.425 -3.112 0.403 2.445 15.633 -1.978 34.653 17 DD_U3A4:U35A36_DD D 3 ? D 36 ? D 4 ? D 35 ? 1 B A 4 1_555 B U 35 1_555 B C 5 1_555 B G 34 1_555 -0.419 -1.060 3.096 0.755 5.990 31.181 -2.944 0.892 2.837 11.014 -1.388 31.745 18 DD_A4C5:G34U35_DD D 4 ? D 35 ? D 5 ? D 34 ? 1 B C 5 1_555 B G 34 1_555 B G 6 1_555 B C 33 1_555 0.316 -1.946 3.461 -2.719 12.920 29.038 -5.750 -1.039 2.365 24.248 5.104 31.840 19 DD_C5G6:C33G34_DD D 5 ? D 34 ? D 6 ? D 33 ? 1 B G 6 1_555 B C 33 1_555 B A 7 1_555 B U 32 1_555 -0.348 -1.451 3.125 -1.229 5.067 31.741 -3.456 0.425 2.876 9.186 2.229 32.156 20 DD_G6A7:U32C33_DD D 6 ? D 33 ? D 7 ? D 32 ? 1 B A 7 1_555 B U 32 1_555 B A 8 1_555 B U 31 1_555 0.215 -1.199 2.771 0.782 1.403 33.146 -2.298 -0.267 2.724 2.458 -1.370 33.184 21 DD_A7A8:U31U32_DD D 7 ? D 32 ? D 8 ? D 31 ? 1 B A 8 1_555 B U 31 1_555 B A 12 1_555 B U 24 1_555 -4.067 1.478 2.683 -7.917 -29.456 104.712 1.229 2.432 2.555 -18.349 4.931 107.793 22 DD_A8A12:U24U31_DD D 8 ? D 31 ? D 12 ? D 24 ? 1 B A 12 1_555 B U 24 1_555 B G 9 1_555 B G 13 1_555 -0.132 -0.958 3.309 -1.916 0.225 -78.814 0.748 -0.157 3.308 -0.177 -1.509 -78.834 23 DD_A12G9:G13U24_DD D 12 ? D 24 ? D 9 ? D 13 ? 1 B G 9 1_555 B G 13 1_555 B G 10 1_555 B G 23 1_555 0.608 1.814 3.007 2.349 11.838 -61.268 -2.223 0.680 2.629 -11.496 2.282 -62.332 24 DD_G9G10:G23G13_DD D 9 ? D 13 ? D 10 ? D 23 ? 1 B G 10 1_555 B G 23 1_555 B G 14 1_555 B G 19 1_555 1.667 3.239 -0.175 12.089 -8.829 -179.710 -1.620 0.834 -0.175 4.414 6.044 -179.712 25 DD_G10G14:G19G23_DD D 10 ? D 23 ? D 14 ? D 19 ? 1 B G 14 1_555 B G 19 1_555 B G 25 1_555 B G 18 1_555 -1.432 -1.804 -2.282 -7.619 -12.516 62.539 -2.039 1.556 -1.764 -11.883 7.233 64.062 26 DD_G14G25:G18G19_DD D 14 ? D 19 ? D 25 ? D 18 ? 1 B U 20 1_555 B U 27 1_555 B A 21 1_555 B A 28 1_555 -0.904 -0.996 3.556 -11.734 -5.681 -169.299 0.508 -0.471 3.542 2.853 -5.892 -169.369 27 DD_U20A21:A28U27_DD D 20 ? D 27 ? D 21 ? D 28 ? 1 B A 21 1_555 B A 28 1_555 B G 26 1_555 B U 29 1_555 2.123 -1.632 3.072 3.304 3.472 82.721 -1.314 -1.528 3.081 2.625 -2.498 82.834 28 DD_A21G26:U29A28_DD D 21 ? D 28 ? D 26 ? D 29 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id YO3 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id YO3 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 YO3-biotin YO3 4 'POTASSIUM ION' K # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6E8S _pdbx_initial_refinement_model.details 'PDB entry 6E8S' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #