data_6VHJ # _entry.id 6VHJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VHJ pdb_00006vhj 10.2210/pdb6vhj/pdb WWPDB D_1000246412 ? ? BMRB 30712 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR of Prochlorosin 1.1 produced by Prochlorococcus MIT 9313' _pdbx_database_related.db_id 30712 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6VHJ _pdbx_database_status.recvd_initial_deposition_date 2020-01-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bobeica, S.C.' 1 0000-0001-5058-5543 'van der Donk, W.A.' 2 0000-0002-5467-7071 'Tang, W.' 3 0000-0002-5739-5416 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12854 12870 'Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc01651a 34094481 ? ? ? ? ? ? ? ? UK ? ? 1 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12871 12876 'Correction: Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc90208j 34101773 ? ? ? ? ? ? ? ? US ? ? 2 Biochemistry BICHAW 0033 0006-2960 ? ? 51 ? 4271 4279 'Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.' 2012 ? 10.1021/bi300255s 22574919 ? ? ? ? ? ? ? ? US ? ? 3 Nat.Chem.Biol. ? ? 1552-4469 ? ? 9 ? 157 159 'The sequence of the enterococcal cytolysin imparts unusual lanthionine stereochemistry.' 2013 ? 10.1038/nchembio.1162 23314913 ? ? ? ? ? ? ? ? US ? ? 4 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 107 ? 10430 10435 'Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.' 2010 ? 10.1073/pnas.0913677107 20479271 ? ? ? ? ? ? ? ? US ? ? 5 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 114 ? E5424 E5433 'Evolutionary radiation of lanthipeptides in marine cyanobacteria.' 2017 ? 10.1073/pnas.1700990114 28630351 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bobeica, S.C.' 1 0000-0001-5058-5543 primary 'Zhu, L.' 2 0000-0002-6657-271X primary 'Acedo, J.Z.' 3 0000-0002-6648-770X primary 'Tang, W.' 4 0000-0002-5739-5416 primary 'van der Donk, W.A.' 5 0000-0002-5467-7071 1 'Bobeica, S.C.' 6 0000-0001-5058-5543 1 'Zhu, L.' 7 0000-0002-6657-271X 1 'Acedo, J.Z.' 8 0000-0002-6648-770X 1 'Tang, W.' 9 0000-0002-5739-5416 1 'van der Donk, W.A.' 10 0000-0002-5467-7071 2 'Tang, W.' 11 ? 2 'van der Donk, W.A.' 12 ? 3 'Tang, W.' 13 ? 3 'van der Donk, W.A.' 14 ? 4 'Li, B.' 15 ? 4 'Sher, D.' 16 ? 4 'Kelly, L.' 17 ? 4 'Shi, Y.' 18 ? 4 'Huang, K.' 19 ? 4 'Knerr, P.J.' 20 ? 4 'Joewono, I.' 21 ? 4 'Rusch, D.' 22 ? 4 'Chisholm, S.W.' 23 ? 4 'van der Donk, W.A.' 24 ? 5 'Cubillos-Ruiz, A.' 25 ? 5 'Berta-Thompson, J.W.' 26 ? 5 'Becker, J.W.' 27 ? 5 'van der Donk, W.A.' 28 ? 5 'Chisholm, S.W.' 29 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Prochlorosin 1.1' _entity.formula_weight 1789.109 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FFCVQG(DBB)ANRF(DBB)INVC' _entity_poly.pdbx_seq_one_letter_code_can FFCVQGTANRFTINVC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 PHE n 1 3 CYS n 1 4 VAL n 1 5 GLN n 1 6 GLY n 1 7 DBB n 1 8 ALA n 1 9 ASN n 1 10 ARG n 1 11 PHE n 1 12 DBB n 1 13 ILE n 1 14 ASN n 1 15 VAL n 1 16 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 16 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Prochlorococcus marinus str. MIT 9313' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 74547 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'Peptide is purified N-terminally His6-tagged from co-expression with ProcM' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VHJ _struct_ref.pdbx_db_accession 6VHJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VHJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VHJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 2 2 '2D 1H-1H TOCSY' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 296 atm 1 6 0 ? 0 'Not defined' Pcn1.1_H2O 0.1 pH 0 0.1 K 2 296 atm 1 6 0 ? 0 'Not defined' Pcn1.1_D2O 0.1 pH 0 0.1 K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '2 mM Prochlorosin 1.1, 90% H2O/10% D2O' '90% H2O/10% D2O' Pcn1.1 solution ? 2 '2 mM Prochlorosin 1.1, 100% D2O' '100% D2O' Pcn1.1_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6VHJ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 6VHJ _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6VHJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRDraw ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 'chemical shift assignment' Sparky ? Goddard 3 'peak picking' Sparky ? Goddard 4 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 5 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VHJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6VHJ _struct.title 'Solution NMR of Prochlorosin 1.1 produced by Prochlorococcus MIT 9313' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VHJ _struct_keywords.text 'lanthipeptide, cyclic peptide, posttranslational modification, RiPP, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 3 SG ? ? ? 1_555 A DBB 7 CB ? ? A CYS 3 A DBB 7 1_555 ? ? ? ? ? ? ? 1.808 ? ? covale2 covale one ? A GLY 6 C ? ? ? 1_555 A DBB 7 N ? ? A GLY 6 A DBB 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A DBB 7 C ? ? ? 1_555 A ALA 8 N ? ? A DBB 7 A ALA 8 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale one ? A PHE 11 C ? ? ? 1_555 A DBB 12 N ? ? A PHE 11 A DBB 12 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A DBB 12 C ? ? ? 1_555 A ILE 13 N ? ? A DBB 12 A ILE 13 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale none ? A DBB 12 CB ? ? ? 1_555 A CYS 16 SG ? ? A DBB 12 A CYS 16 1_555 ? ? ? ? ? ? ? 1.805 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6VHJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 DBB 7 7 7 DBB DBB A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 DBB 12 12 12 DBB DBB A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 CYS 16 16 16 CYS CYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 2 0 2020-09-09 3 'Structure model' 2 1 2021-07-14 4 'Structure model' 2 2 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Chirality error' ;Residue DBB 12 should have been (S) configuration at CB. An additional improper angle was added to the XPLOR patch command to ensure DL-(methyl)lanthionine linkages maintain (S) configuration at CB. ; # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Refinement description' 6 3 'Structure model' 'Database references' 7 4 'Structure model' 'Database references' 8 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' pdbx_nmr_ensemble 3 2 'Structure model' pdbx_nmr_refine 4 2 'Structure model' pdbx_struct_assembly 5 2 'Structure model' pdbx_validate_close_contact 6 2 'Structure model' pdbx_validate_torsion 7 2 'Structure model' struct_conn 8 3 'Structure model' citation 9 3 'Structure model' citation_author 10 4 'Structure model' database_2 11 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.Cartn_x' 2 2 'Structure model' '_atom_site.Cartn_y' 3 2 'Structure model' '_atom_site.Cartn_z' 4 2 'Structure model' '_pdbx_nmr_ensemble.conformer_selection_criteria' 5 2 'Structure model' '_pdbx_nmr_ensemble.conformers_calculated_total_number' 6 2 'Structure model' '_pdbx_nmr_refine.software_ordinal' 7 2 'Structure model' '_pdbx_struct_assembly.details' 8 2 'Structure model' '_pdbx_struct_assembly.method_details' 9 2 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 6VHJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Prochlorosin 1.1' 2 ? mM 'natural abundance' 2 'Prochlorosin 1.1' 2 ? mM 'natural abundance' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 14 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 9 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DBB _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 9 ? ? 34.94 -92.17 2 1 ARG A 10 ? ? 76.44 -4.08 3 1 PHE A 11 ? ? -132.14 -41.79 4 1 DBB A 12 ? ? -101.39 -38.63 5 1 ILE A 13 ? ? 36.73 21.82 6 1 ASN A 14 ? ? -168.53 -55.59 7 1 VAL A 15 ? ? -178.02 92.26 8 2 GLN A 5 ? ? 38.47 69.49 9 2 DBB A 7 ? ? 25.38 59.60 10 2 DBB A 12 ? ? -144.33 -36.28 11 2 ILE A 13 ? ? 59.04 -95.58 12 2 VAL A 15 ? ? 172.52 101.51 13 3 GLN A 5 ? ? 48.26 71.52 14 3 DBB A 7 ? ? 47.90 76.28 15 3 ASN A 9 ? ? -65.41 -82.64 16 3 ARG A 10 ? ? 75.48 -17.38 17 3 DBB A 12 ? ? -97.68 -38.66 18 3 ILE A 13 ? ? 39.93 19.64 19 3 ASN A 14 ? ? -150.90 -59.20 20 3 VAL A 15 ? ? -164.54 -31.53 21 4 GLN A 5 ? ? 173.58 84.97 22 4 DBB A 12 ? ? -96.48 -49.16 23 4 ILE A 13 ? ? 52.66 98.57 24 4 VAL A 15 ? ? 164.18 168.89 25 5 CYS A 3 ? ? -8.82 102.58 26 5 DBB A 12 ? ? -100.08 -53.21 27 5 ILE A 13 ? ? 65.44 95.58 28 5 ASN A 14 ? ? 92.67 -61.36 29 6 DBB A 7 ? ? 85.40 72.98 30 6 ASN A 9 ? ? -24.72 -79.02 31 6 PHE A 11 ? ? 174.24 -16.89 32 6 DBB A 12 ? ? -159.35 57.98 33 6 ILE A 13 ? ? -65.08 92.10 34 6 ASN A 14 ? ? 144.21 -63.93 35 6 VAL A 15 ? ? -171.13 14.91 36 7 DBB A 12 ? ? -132.24 -11.80 37 7 ILE A 13 ? ? 36.14 -88.14 38 7 VAL A 15 ? ? -172.28 100.52 39 8 GLN A 5 ? ? 172.05 80.44 40 8 DBB A 12 ? ? -132.21 48.18 41 8 ILE A 13 ? ? -23.28 -74.72 42 8 VAL A 15 ? ? 165.79 93.72 43 9 DBB A 12 ? ? -102.10 29.83 44 9 ILE A 13 ? ? -27.27 -55.12 45 9 VAL A 15 ? ? 169.54 83.01 46 10 ASN A 9 ? ? -54.41 -85.40 47 10 ARG A 10 ? ? 82.68 -37.94 48 10 DBB A 12 ? ? -86.78 -64.66 49 10 ILE A 13 ? ? 68.34 -11.07 50 10 ASN A 14 ? ? -157.21 33.17 51 10 VAL A 15 ? ? 91.97 77.62 52 11 CYS A 3 ? ? 2.53 97.24 53 11 ASN A 9 ? ? -47.40 -88.71 54 11 ARG A 10 ? ? 70.73 50.03 55 11 PHE A 11 ? ? 168.94 -10.43 56 11 DBB A 12 ? ? -172.88 27.94 57 11 VAL A 15 ? ? 165.71 22.44 58 12 GLN A 5 ? ? 38.08 66.98 59 12 DBB A 7 ? ? 26.21 45.94 60 12 ASN A 9 ? ? -35.14 -85.71 61 12 PHE A 11 ? ? 172.96 -20.14 62 12 DBB A 12 ? ? -148.15 22.88 63 12 ILE A 13 ? ? -30.82 137.19 64 12 ASN A 14 ? ? 73.13 -56.62 65 12 VAL A 15 ? ? 179.38 121.27 66 13 GLN A 5 ? ? 168.40 85.70 67 13 DBB A 12 ? ? -103.33 30.07 68 13 ILE A 13 ? ? -25.91 -52.40 69 13 VAL A 15 ? ? -166.90 92.69 70 14 CYS A 3 ? ? -10.27 93.82 71 14 DBB A 12 ? ? -94.98 -74.57 72 14 ILE A 13 ? ? 74.55 -30.61 73 14 VAL A 15 ? ? 94.56 86.10 74 15 DBB A 7 ? ? 64.43 75.51 75 15 ALA A 8 ? ? -121.47 -52.31 76 15 ASN A 9 ? ? 47.37 -89.07 77 15 ARG A 10 ? ? 72.53 -12.13 78 15 DBB A 12 ? ? -141.03 -34.89 79 15 ILE A 13 ? ? 39.40 37.33 80 15 ASN A 14 ? ? 179.34 -77.85 81 15 VAL A 15 ? ? -151.63 -2.91 82 16 GLN A 5 ? ? -165.13 93.38 83 16 ASN A 9 ? ? -58.85 -94.40 84 16 ARG A 10 ? ? 70.94 59.76 85 16 PHE A 11 ? ? 166.27 -51.82 86 16 DBB A 12 ? ? -133.70 40.63 87 16 VAL A 15 ? ? 154.93 81.81 88 17 CYS A 3 ? ? -6.21 96.68 89 17 DBB A 12 ? ? -136.57 -56.22 90 17 ILE A 13 ? ? 75.26 -97.06 91 17 VAL A 15 ? ? -172.41 101.99 92 18 ALA A 8 ? ? 32.33 31.97 93 18 DBB A 12 ? ? -140.16 -11.61 94 18 ILE A 13 ? ? 41.10 -91.79 95 18 VAL A 15 ? ? 167.01 92.81 96 19 CYS A 3 ? ? -8.95 96.08 97 19 DBB A 12 ? ? -99.84 31.72 98 19 ILE A 13 ? ? -26.67 -58.09 99 19 VAL A 15 ? ? 167.30 93.86 100 20 CYS A 3 ? ? 18.88 102.65 101 20 GLN A 5 ? ? -162.88 104.91 102 20 ASN A 9 ? ? -81.24 -80.37 103 20 ARG A 10 ? ? 71.30 -12.56 104 20 DBB A 12 ? ? -111.09 -63.77 105 20 ILE A 13 ? ? 70.63 -33.75 106 20 VAL A 15 ? ? 175.03 36.91 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R37GM058822 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id DBB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id DBB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #