data_6W2G # _entry.id 6W2G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6W2G pdb_00006w2g 10.2210/pdb6w2g/pdb WWPDB D_1000247106 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-10 2 'Structure model' 2 0 2021-08-25 3 'Structure model' 2 1 2023-11-01 4 'Structure model' 2 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Database references' 5 2 'Structure model' 'Derived calculations' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_nonpoly_scheme 4 2 'Structure model' pdbx_poly_seq_scheme 5 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 2 'Structure model' pdbx_unobs_or_zero_occ_residues 7 2 'Structure model' struct_conf 8 2 'Structure model' struct_ref_seq 9 2 'Structure model' struct_ref_seq_dif 10 2 'Structure model' struct_site 11 2 'Structure model' struct_site_gen 12 3 'Structure model' chem_comp_atom 13 3 'Structure model' chem_comp_bond 14 3 'Structure model' citation 15 3 'Structure model' citation_author 16 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_seq_id' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_seq_num' 5 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_seq_num' 6 2 'Structure model' '_pdbx_unobs_or_zero_occ_residues.auth_seq_id' 7 2 'Structure model' '_struct_conf.beg_auth_seq_id' 8 2 'Structure model' '_struct_conf.end_auth_seq_id' 9 2 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 10 2 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 11 2 'Structure model' '_struct_ref_seq_dif.pdbx_auth_seq_num' 12 2 'Structure model' '_struct_site.details' 13 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 14 2 'Structure model' '_struct_site_gen.auth_seq_id' 15 3 'Structure model' '_citation.country' 16 3 'Structure model' '_citation.journal_abbrev' 17 3 'Structure model' '_citation.journal_id_ASTM' 18 3 'Structure model' '_citation.journal_id_CSD' 19 3 'Structure model' '_citation.journal_id_ISSN' 20 3 'Structure model' '_citation.journal_volume' 21 3 'Structure model' '_citation.page_first' 22 3 'Structure model' '_citation.page_last' 23 3 'Structure model' '_citation.pdbx_database_id_DOI' 24 3 'Structure model' '_citation.pdbx_database_id_PubMed' 25 3 'Structure model' '_citation.title' 26 3 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6W2G _pdbx_database_status.recvd_initial_deposition_date 2020-03-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bowler, B.E.' 1 0000-0003-1543-2466 'Zeng, B.' 2 0000-0002-7780-3501 'Becht, D.C.' 3 0000-0003-3127-3418 'Rothfuss, M.' 4 0000-0002-3664-6300 'Sprang, S.R.' 5 0000-0001-6307-6166 'Mou, T.-C.' 6 0000-0001-6554-1519 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 22979 _citation.page_last 22992 _citation.title 'High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c04966 _citation.pdbx_database_id_PubMed 37815921 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rothfuss, M.T.' 1 ? primary 'Becht, D.C.' 2 ? primary 'Zeng, B.' 3 ? primary 'McClelland, L.J.' 4 ? primary 'Yates-Hansen, C.' 5 ? primary 'Bowler, B.E.' 6 0000-0003-1543-2466 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UV excision repair protein RAD23 homolog A' 5534.243 2 ? Y188G ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hHR23A # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSTLVTGSEYETMLTEIMSMGYERERVVAALRASGNNPHRAVEYLLTGIPG _entity_poly.pdbx_seq_one_letter_code_can GSTLVTGSEYETMLTEIMSMGYERERVVAALRASGNNPHRAVEYLLTGIPG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 LEU n 1 5 VAL n 1 6 THR n 1 7 GLY n 1 8 SER n 1 9 GLU n 1 10 TYR n 1 11 GLU n 1 12 THR n 1 13 MET n 1 14 LEU n 1 15 THR n 1 16 GLU n 1 17 ILE n 1 18 MET n 1 19 SER n 1 20 MET n 1 21 GLY n 1 22 TYR n 1 23 GLU n 1 24 ARG n 1 25 GLU n 1 26 ARG n 1 27 VAL n 1 28 VAL n 1 29 ALA n 1 30 ALA n 1 31 LEU n 1 32 ARG n 1 33 ALA n 1 34 SER n 1 35 GLY n 1 36 ASN n 1 37 ASN n 1 38 PRO n 1 39 HIS n 1 40 ARG n 1 41 ALA n 1 42 VAL n 1 43 GLU n 1 44 TYR n 1 45 LEU n 1 46 LEU n 1 47 THR n 1 48 GLY n 1 49 ILE n 1 50 PRO n 1 51 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 51 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RAD23A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'Thrombin cleavage site replaced with TEV cleavage site' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 154 ? ? ? A . n A 1 2 SER 2 155 ? ? ? A . n A 1 3 THR 3 156 3 THR THR A . n A 1 4 LEU 4 157 4 LEU LEU A . n A 1 5 VAL 5 158 5 VAL VAL A . n A 1 6 THR 6 159 6 THR THR A . n A 1 7 GLY 7 160 7 GLY GLY A . n A 1 8 SER 8 161 8 SER SER A . n A 1 9 GLU 9 162 9 GLU GLU A . n A 1 10 TYR 10 163 10 TYR TYR A . n A 1 11 GLU 11 164 11 GLU GLU A . n A 1 12 THR 12 165 12 THR THR A . n A 1 13 MET 13 166 13 MET MET A . n A 1 14 LEU 14 167 14 LEU LEU A . n A 1 15 THR 15 168 15 THR THR A . n A 1 16 GLU 16 169 16 GLU GLU A . n A 1 17 ILE 17 170 17 ILE ILE A . n A 1 18 MET 18 171 18 MET MET A . n A 1 19 SER 19 172 19 SER SER A . n A 1 20 MET 20 173 20 MET MET A . n A 1 21 GLY 21 174 21 GLY GLY A . n A 1 22 TYR 22 175 22 TYR TYR A . n A 1 23 GLU 23 176 23 GLU GLU A . n A 1 24 ARG 24 177 24 ARG ARG A . n A 1 25 GLU 25 178 25 GLU GLU A . n A 1 26 ARG 26 179 26 ARG ARG A . n A 1 27 VAL 27 180 27 VAL VAL A . n A 1 28 VAL 28 181 28 VAL VAL A . n A 1 29 ALA 29 182 29 ALA ALA A . n A 1 30 ALA 30 183 30 ALA ALA A . n A 1 31 LEU 31 184 31 LEU LEU A . n A 1 32 ARG 32 185 32 ARG ARG A . n A 1 33 ALA 33 186 33 ALA ALA A . n A 1 34 SER 34 187 34 SER SER A . n A 1 35 GLY 35 188 35 GLY GLY A . n A 1 36 ASN 36 189 36 ASN ASN A . n A 1 37 ASN 37 190 37 ASN ASN A . n A 1 38 PRO 38 191 38 PRO PRO A . n A 1 39 HIS 39 192 39 HIS HIS A . n A 1 40 ARG 40 193 40 ARG ARG A . n A 1 41 ALA 41 194 41 ALA ALA A . n A 1 42 VAL 42 195 42 VAL VAL A . n A 1 43 GLU 43 196 43 GLU GLU A . n A 1 44 TYR 44 197 44 TYR TYR A . n A 1 45 LEU 45 198 45 LEU LEU A . n A 1 46 LEU 46 199 46 LEU LEU A . n A 1 47 THR 47 200 47 THR THR A . n A 1 48 GLY 48 201 48 GLY GLY A . n A 1 49 ILE 49 202 49 ILE ILE A . n A 1 50 PRO 50 203 50 PRO PRO A . n A 1 51 GLY 51 204 51 GLY GLY A . n B 1 1 GLY 1 154 ? ? ? B . n B 1 2 SER 2 155 ? ? ? B . n B 1 3 THR 3 156 ? ? ? B . n B 1 4 LEU 4 157 4 LEU LEU B . n B 1 5 VAL 5 158 5 VAL VAL B . n B 1 6 THR 6 159 6 THR THR B . n B 1 7 GLY 7 160 7 GLY GLY B . n B 1 8 SER 8 161 8 SER SER B . n B 1 9 GLU 9 162 9 GLU GLU B . n B 1 10 TYR 10 163 10 TYR TYR B . n B 1 11 GLU 11 164 11 GLU GLU B . n B 1 12 THR 12 165 12 THR THR B . n B 1 13 MET 13 166 13 MET MET B . n B 1 14 LEU 14 167 14 LEU LEU B . n B 1 15 THR 15 168 15 THR THR B . n B 1 16 GLU 16 169 16 GLU GLU B . n B 1 17 ILE 17 170 17 ILE ILE B . n B 1 18 MET 18 171 18 MET MET B . n B 1 19 SER 19 172 19 SER SER B . n B 1 20 MET 20 173 20 MET MET B . n B 1 21 GLY 21 174 21 GLY GLY B . n B 1 22 TYR 22 175 22 TYR TYR B . n B 1 23 GLU 23 176 23 GLU GLU B . n B 1 24 ARG 24 177 24 ARG ARG B . n B 1 25 GLU 25 178 25 GLU GLU B . n B 1 26 ARG 26 179 26 ARG ARG B . n B 1 27 VAL 27 180 27 VAL VAL B . n B 1 28 VAL 28 181 28 VAL VAL B . n B 1 29 ALA 29 182 29 ALA ALA B . n B 1 30 ALA 30 183 30 ALA ALA B . n B 1 31 LEU 31 184 31 LEU LEU B . n B 1 32 ARG 32 185 32 ARG ARG B . n B 1 33 ALA 33 186 33 ALA ALA B . n B 1 34 SER 34 187 34 SER SER B . n B 1 35 GLY 35 188 35 GLY GLY B . n B 1 36 ASN 36 189 36 ASN ASN B . n B 1 37 ASN 37 190 37 ASN ASN B . n B 1 38 PRO 38 191 38 PRO PRO B . n B 1 39 HIS 39 192 39 HIS HIS B . n B 1 40 ARG 40 193 40 ARG ARG B . n B 1 41 ALA 41 194 41 ALA ALA B . n B 1 42 VAL 42 195 42 VAL VAL B . n B 1 43 GLU 43 196 43 GLU GLU B . n B 1 44 TYR 44 197 44 TYR TYR B . n B 1 45 LEU 45 198 45 LEU LEU B . n B 1 46 LEU 46 199 46 LEU LEU B . n B 1 47 THR 47 200 47 THR THR B . n B 1 48 GLY 48 201 48 GLY GLY B . n B 1 49 ILE 49 202 49 ILE ILE B . n B 1 50 PRO 50 203 50 PRO PRO B . n B 1 51 GLY 51 204 51 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 301 2 EDO EDO A . D 2 EDO 1 301 1 EDO EDO B . E 2 EDO 1 302 3 EDO EDO B . F 3 HOH 1 401 67 HOH HOH A . F 3 HOH 2 402 45 HOH HOH A . F 3 HOH 3 403 30 HOH HOH A . F 3 HOH 4 404 47 HOH HOH A . F 3 HOH 5 405 21 HOH HOH A . F 3 HOH 6 406 20 HOH HOH A . F 3 HOH 7 407 60 HOH HOH A . F 3 HOH 8 408 5 HOH HOH A . F 3 HOH 9 409 8 HOH HOH A . F 3 HOH 10 410 36 HOH HOH A . F 3 HOH 11 411 26 HOH HOH A . F 3 HOH 12 412 6 HOH HOH A . F 3 HOH 13 413 22 HOH HOH A . F 3 HOH 14 414 16 HOH HOH A . F 3 HOH 15 415 7 HOH HOH A . F 3 HOH 16 416 11 HOH HOH A . F 3 HOH 17 417 77 HOH HOH A . F 3 HOH 18 418 17 HOH HOH A . F 3 HOH 19 419 23 HOH HOH A . F 3 HOH 20 420 40 HOH HOH A . F 3 HOH 21 421 13 HOH HOH A . F 3 HOH 22 422 51 HOH HOH A . F 3 HOH 23 423 34 HOH HOH A . F 3 HOH 24 424 15 HOH HOH A . F 3 HOH 25 425 68 HOH HOH A . F 3 HOH 26 426 25 HOH HOH A . F 3 HOH 27 427 72 HOH HOH A . F 3 HOH 28 428 18 HOH HOH A . F 3 HOH 29 429 39 HOH HOH A . F 3 HOH 30 430 69 HOH HOH A . F 3 HOH 31 431 52 HOH HOH A . F 3 HOH 32 432 65 HOH HOH A . F 3 HOH 33 433 38 HOH HOH A . F 3 HOH 34 434 50 HOH HOH A . F 3 HOH 35 435 64 HOH HOH A . F 3 HOH 36 436 66 HOH HOH A . G 3 HOH 1 401 35 HOH HOH B . G 3 HOH 2 402 62 HOH HOH B . G 3 HOH 3 403 37 HOH HOH B . G 3 HOH 4 404 73 HOH HOH B . G 3 HOH 5 405 4 HOH HOH B . G 3 HOH 6 406 12 HOH HOH B . G 3 HOH 7 407 42 HOH HOH B . G 3 HOH 8 408 53 HOH HOH B . G 3 HOH 9 409 19 HOH HOH B . G 3 HOH 10 410 75 HOH HOH B . G 3 HOH 11 411 61 HOH HOH B . G 3 HOH 12 412 10 HOH HOH B . G 3 HOH 13 413 27 HOH HOH B . G 3 HOH 14 414 14 HOH HOH B . G 3 HOH 15 415 44 HOH HOH B . G 3 HOH 16 416 24 HOH HOH B . G 3 HOH 17 417 78 HOH HOH B . G 3 HOH 18 418 9 HOH HOH B . G 3 HOH 19 419 33 HOH HOH B . G 3 HOH 20 420 74 HOH HOH B . G 3 HOH 21 421 48 HOH HOH B . G 3 HOH 22 422 31 HOH HOH B . G 3 HOH 23 423 56 HOH HOH B . G 3 HOH 24 424 49 HOH HOH B . G 3 HOH 25 425 70 HOH HOH B . G 3 HOH 26 426 57 HOH HOH B . G 3 HOH 27 427 41 HOH HOH B . G 3 HOH 28 428 59 HOH HOH B . G 3 HOH 29 429 71 HOH HOH B . G 3 HOH 30 430 54 HOH HOH B . G 3 HOH 31 431 28 HOH HOH B . G 3 HOH 32 432 32 HOH HOH B . G 3 HOH 33 433 76 HOH HOH B . G 3 HOH 34 434 63 HOH HOH B . G 3 HOH 35 435 43 HOH HOH B . G 3 HOH 36 436 58 HOH HOH B . G 3 HOH 37 437 55 HOH HOH B . G 3 HOH 38 438 29 HOH HOH B . G 3 HOH 39 439 46 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 176 ? CD ? A GLU 23 CD 2 1 Y 0 A GLU 176 ? OE1 ? A GLU 23 OE1 3 1 Y 0 A GLU 176 ? OE2 ? A GLU 23 OE2 4 1 Y 0 A GLU 178 ? CG ? A GLU 25 CG 5 1 Y 0 A GLU 178 ? CD ? A GLU 25 CD 6 1 Y 0 A GLU 178 ? OE1 ? A GLU 25 OE1 7 1 Y 0 A GLU 178 ? OE2 ? A GLU 25 OE2 8 1 Y 0 B GLU 176 ? CD ? B GLU 23 CD 9 1 Y 0 B GLU 176 ? OE1 ? B GLU 23 OE1 10 1 Y 0 B GLU 176 ? OE2 ? B GLU 23 OE2 11 1 Y 0 B GLU 178 ? CD ? B GLU 25 CD 12 1 Y 0 B ARG 179 ? NE ? B ARG 26 NE 13 1 Y 0 B ARG 179 ? CZ ? B ARG 26 CZ 14 1 Y 0 B ARG 179 ? NH1 ? B ARG 26 NH1 15 1 Y 0 B ARG 179 ? NH2 ? B ARG 26 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Mar 15,2019' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 1.17.1-3660 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1-3660 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? '0.8.9.2 EL' 6 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1-3660 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 91.389 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6W2G _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.490 _cell.length_a_esd ? _cell.length_b 40.080 _cell.length_b_esd ? _cell.length_c 32.893 _cell.length_c_esd ? _cell.volume 38866.760 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6W2G _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M Ammonium sulfate, 0.1M Phosphate-citrate pH 4.2, 40%(v/v) Ethylene glycol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-01-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 6.64 _reflns.entry_id 6W2G _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 33.88 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29568 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.77 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_Rmerge_I_obs 0.01716 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 56.13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.01868 _reflns.pdbx_Rpim_I_all 0.007273 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low 1.139 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 16.63 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2513 _reflns_shell.percent_possible_all 81.04 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.07858 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.0884 _reflns_shell.pdbx_Rpim_I_all 0.0396 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.997 _reflns_shell.pdbx_CC_star 0.999 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 9.33 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6W2G _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 32.88 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29568 _refine.ls_number_reflns_R_free 1763 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.77 _refine.ls_percent_reflns_R_free 5.96 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1399 _refine.ls_R_factor_R_free 0.1527 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1391 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.45 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'P43 UBA-1 Y188G Structure Solved by Sulfur SAD' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 14.7979 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0802 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 32.88 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 832 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 745 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0083 ? 771 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0356 ? 1039 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0766 ? 119 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0068 ? 135 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.4720 ? 116 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.10 1.13 . . 113 1785 79.75 . . . 0.1695 . 0.1592 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.13 1.16 . . 125 1997 90.14 . . . 0.1842 . 0.1499 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.16 1.20 . . 140 2094 93.01 . . . 0.1513 . 0.1399 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.20 1.24 . . 129 2110 92.87 . . . 0.1463 . 0.1400 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.24 1.29 . . 125 2094 93.35 . . . 0.1546 . 0.1363 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.29 1.35 . . 138 2178 97.07 . . . 0.1504 . 0.1331 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.35 1.42 . . 135 2184 96.34 . . . 0.1597 . 0.1342 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.42 1.51 . . 141 2164 96.93 . . . 0.1476 . 0.1244 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.51 1.63 . . 147 2230 98.75 . . . 0.1470 . 0.1225 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.63 1.79 . . 140 2186 97.16 . . . 0.1294 . 0.1259 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.79 2.05 . . 143 2256 99.38 . . . 0.1415 . 0.1319 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.05 2.59 . . 142 2237 98.27 . . . 0.1408 . 0.1372 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.59 32.88 . . 145 2290 98.74 . . . 0.1719 . 0.1560 . . . . . . . . . . . # _struct.entry_id 6W2G _struct.title 'Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A in Monoclinic Unit Cell' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6W2G _struct_keywords.text 'Ubiquitin Associated Domain, UBA Domain, DNA Binding Protein, Helical Bundle' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RD23A_HUMAN _struct_ref.pdbx_db_accession P54725 _struct_ref.pdbx_db_isoform P54725-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code STLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG _struct_ref.pdbx_align_begin 155 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6W2G A 2 ? 51 ? P54725 155 ? 204 ? 155 204 2 1 6W2G B 2 ? 51 ? P54725 155 ? 204 ? 155 204 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6W2G GLY A 1 ? UNP P54725 ? ? 'expression tag' 154 1 1 6W2G GLY A 35 ? UNP P54725 TYR 188 'engineered mutation' 188 2 2 6W2G GLY B 1 ? UNP P54725 ? ? 'expression tag' 154 3 2 6W2G GLY B 35 ? UNP P54725 TYR 188 'engineered mutation' 188 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,F 2 1 B,D,E,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 6 ? SER A 19 ? THR A 159 SER A 172 1 ? 14 HELX_P HELX_P2 AA2 GLU A 23 ? SER A 34 ? GLU A 176 SER A 187 1 ? 12 HELX_P HELX_P3 AA3 ASN A 37 ? GLY A 48 ? ASN A 190 GLY A 201 1 ? 12 HELX_P HELX_P4 AA4 THR B 6 ? SER B 19 ? THR B 159 SER B 172 1 ? 14 HELX_P HELX_P5 AA5 GLU B 23 ? SER B 34 ? GLU B 176 SER B 187 1 ? 12 HELX_P HELX_P6 AA6 ASN B 37 ? GLY B 48 ? ASN B 190 GLY B 201 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 301 ? 6 'binding site for residue EDO A 301' AC2 Software B EDO 301 ? 5 'binding site for residue EDO B 301' AC3 Software B EDO 302 ? 4 'binding site for residue EDO B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 43 ? GLU A 196 . ? 1_555 ? 2 AC1 6 THR A 47 ? THR A 200 . ? 1_555 ? 3 AC1 6 GLY A 48 ? GLY A 201 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 426 . ? 1_555 ? 5 AC1 6 PRO B 38 ? PRO B 191 . ? 1_455 ? 6 AC1 6 HIS B 39 ? HIS B 192 . ? 1_455 ? 7 AC2 5 MET B 20 ? MET B 173 . ? 1_555 ? 8 AC2 5 GLY B 21 ? GLY B 174 . ? 1_555 ? 9 AC2 5 TYR B 22 ? TYR B 175 . ? 1_555 ? 10 AC2 5 HOH G . ? HOH B 415 . ? 1_555 ? 11 AC2 5 HOH G . ? HOH B 425 . ? 1_555 ? 12 AC3 4 THR A 15 ? THR A 168 . ? 1_554 ? 13 AC3 4 ARG B 32 ? ARG B 185 . ? 1_555 ? 14 AC3 4 HOH G . ? HOH B 404 . ? 1_555 ? 15 AC3 4 HOH G . ? HOH B 409 . ? 1_555 ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # _pdbx_entry_details.entry_id 6W2G _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 154 ? A GLY 1 2 1 Y 1 A SER 155 ? A SER 2 3 1 Y 1 B GLY 154 ? B GLY 1 4 1 Y 1 B SER 155 ? B SER 2 5 1 Y 1 B THR 156 ? B THR 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 EDO C1 C N N 58 EDO O1 O N N 59 EDO C2 C N N 60 EDO O2 O N N 61 EDO H11 H N N 62 EDO H12 H N N 63 EDO HO1 H N N 64 EDO H21 H N N 65 EDO H22 H N N 66 EDO HO2 H N N 67 GLU N N N N 68 GLU CA C N S 69 GLU C C N N 70 GLU O O N N 71 GLU CB C N N 72 GLU CG C N N 73 GLU CD C N N 74 GLU OE1 O N N 75 GLU OE2 O N N 76 GLU OXT O N N 77 GLU H H N N 78 GLU H2 H N N 79 GLU HA H N N 80 GLU HB2 H N N 81 GLU HB3 H N N 82 GLU HG2 H N N 83 GLU HG3 H N N 84 GLU HE2 H N N 85 GLU HXT H N N 86 GLY N N N N 87 GLY CA C N N 88 GLY C C N N 89 GLY O O N N 90 GLY OXT O N N 91 GLY H H N N 92 GLY H2 H N N 93 GLY HA2 H N N 94 GLY HA3 H N N 95 GLY HXT H N N 96 HIS N N N N 97 HIS CA C N S 98 HIS C C N N 99 HIS O O N N 100 HIS CB C N N 101 HIS CG C Y N 102 HIS ND1 N Y N 103 HIS CD2 C Y N 104 HIS CE1 C Y N 105 HIS NE2 N Y N 106 HIS OXT O N N 107 HIS H H N N 108 HIS H2 H N N 109 HIS HA H N N 110 HIS HB2 H N N 111 HIS HB3 H N N 112 HIS HD1 H N N 113 HIS HD2 H N N 114 HIS HE1 H N N 115 HIS HE2 H N N 116 HIS HXT H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 ILE N N N N 121 ILE CA C N S 122 ILE C C N N 123 ILE O O N N 124 ILE CB C N S 125 ILE CG1 C N N 126 ILE CG2 C N N 127 ILE CD1 C N N 128 ILE OXT O N N 129 ILE H H N N 130 ILE H2 H N N 131 ILE HA H N N 132 ILE HB H N N 133 ILE HG12 H N N 134 ILE HG13 H N N 135 ILE HG21 H N N 136 ILE HG22 H N N 137 ILE HG23 H N N 138 ILE HD11 H N N 139 ILE HD12 H N N 140 ILE HD13 H N N 141 ILE HXT H N N 142 LEU N N N N 143 LEU CA C N S 144 LEU C C N N 145 LEU O O N N 146 LEU CB C N N 147 LEU CG C N N 148 LEU CD1 C N N 149 LEU CD2 C N N 150 LEU OXT O N N 151 LEU H H N N 152 LEU H2 H N N 153 LEU HA H N N 154 LEU HB2 H N N 155 LEU HB3 H N N 156 LEU HG H N N 157 LEU HD11 H N N 158 LEU HD12 H N N 159 LEU HD13 H N N 160 LEU HD21 H N N 161 LEU HD22 H N N 162 LEU HD23 H N N 163 LEU HXT H N N 164 MET N N N N 165 MET CA C N S 166 MET C C N N 167 MET O O N N 168 MET CB C N N 169 MET CG C N N 170 MET SD S N N 171 MET CE C N N 172 MET OXT O N N 173 MET H H N N 174 MET H2 H N N 175 MET HA H N N 176 MET HB2 H N N 177 MET HB3 H N N 178 MET HG2 H N N 179 MET HG3 H N N 180 MET HE1 H N N 181 MET HE2 H N N 182 MET HE3 H N N 183 MET HXT H N N 184 PRO N N N N 185 PRO CA C N S 186 PRO C C N N 187 PRO O O N N 188 PRO CB C N N 189 PRO CG C N N 190 PRO CD C N N 191 PRO OXT O N N 192 PRO H H N N 193 PRO HA H N N 194 PRO HB2 H N N 195 PRO HB3 H N N 196 PRO HG2 H N N 197 PRO HG3 H N N 198 PRO HD2 H N N 199 PRO HD3 H N N 200 PRO HXT H N N 201 SER N N N N 202 SER CA C N S 203 SER C C N N 204 SER O O N N 205 SER CB C N N 206 SER OG O N N 207 SER OXT O N N 208 SER H H N N 209 SER H2 H N N 210 SER HA H N N 211 SER HB2 H N N 212 SER HB3 H N N 213 SER HG H N N 214 SER HXT H N N 215 THR N N N N 216 THR CA C N S 217 THR C C N N 218 THR O O N N 219 THR CB C N R 220 THR OG1 O N N 221 THR CG2 C N N 222 THR OXT O N N 223 THR H H N N 224 THR H2 H N N 225 THR HA H N N 226 THR HB H N N 227 THR HG1 H N N 228 THR HG21 H N N 229 THR HG22 H N N 230 THR HG23 H N N 231 THR HXT H N N 232 TYR N N N N 233 TYR CA C N S 234 TYR C C N N 235 TYR O O N N 236 TYR CB C N N 237 TYR CG C Y N 238 TYR CD1 C Y N 239 TYR CD2 C Y N 240 TYR CE1 C Y N 241 TYR CE2 C Y N 242 TYR CZ C Y N 243 TYR OH O N N 244 TYR OXT O N N 245 TYR H H N N 246 TYR H2 H N N 247 TYR HA H N N 248 TYR HB2 H N N 249 TYR HB3 H N N 250 TYR HD1 H N N 251 TYR HD2 H N N 252 TYR HE1 H N N 253 TYR HE2 H N N 254 TYR HH H N N 255 TYR HXT H N N 256 VAL N N N N 257 VAL CA C N S 258 VAL C C N N 259 VAL O O N N 260 VAL CB C N N 261 VAL CG1 C N N 262 VAL CG2 C N N 263 VAL OXT O N N 264 VAL H H N N 265 VAL H2 H N N 266 VAL HA H N N 267 VAL HB H N N 268 VAL HG11 H N N 269 VAL HG12 H N N 270 VAL HG13 H N N 271 VAL HG21 H N N 272 VAL HG22 H N N 273 VAL HG23 H N N 274 VAL HXT H N N 275 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 EDO C1 O1 sing N N 55 EDO C1 C2 sing N N 56 EDO C1 H11 sing N N 57 EDO C1 H12 sing N N 58 EDO O1 HO1 sing N N 59 EDO C2 O2 sing N N 60 EDO C2 H21 sing N N 61 EDO C2 H22 sing N N 62 EDO O2 HO2 sing N N 63 GLU N CA sing N N 64 GLU N H sing N N 65 GLU N H2 sing N N 66 GLU CA C sing N N 67 GLU CA CB sing N N 68 GLU CA HA sing N N 69 GLU C O doub N N 70 GLU C OXT sing N N 71 GLU CB CG sing N N 72 GLU CB HB2 sing N N 73 GLU CB HB3 sing N N 74 GLU CG CD sing N N 75 GLU CG HG2 sing N N 76 GLU CG HG3 sing N N 77 GLU CD OE1 doub N N 78 GLU CD OE2 sing N N 79 GLU OE2 HE2 sing N N 80 GLU OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 HIS N CA sing N N 91 HIS N H sing N N 92 HIS N H2 sing N N 93 HIS CA C sing N N 94 HIS CA CB sing N N 95 HIS CA HA sing N N 96 HIS C O doub N N 97 HIS C OXT sing N N 98 HIS CB CG sing N N 99 HIS CB HB2 sing N N 100 HIS CB HB3 sing N N 101 HIS CG ND1 sing Y N 102 HIS CG CD2 doub Y N 103 HIS ND1 CE1 doub Y N 104 HIS ND1 HD1 sing N N 105 HIS CD2 NE2 sing Y N 106 HIS CD2 HD2 sing N N 107 HIS CE1 NE2 sing Y N 108 HIS CE1 HE1 sing N N 109 HIS NE2 HE2 sing N N 110 HIS OXT HXT sing N N 111 HOH O H1 sing N N 112 HOH O H2 sing N N 113 ILE N CA sing N N 114 ILE N H sing N N 115 ILE N H2 sing N N 116 ILE CA C sing N N 117 ILE CA CB sing N N 118 ILE CA HA sing N N 119 ILE C O doub N N 120 ILE C OXT sing N N 121 ILE CB CG1 sing N N 122 ILE CB CG2 sing N N 123 ILE CB HB sing N N 124 ILE CG1 CD1 sing N N 125 ILE CG1 HG12 sing N N 126 ILE CG1 HG13 sing N N 127 ILE CG2 HG21 sing N N 128 ILE CG2 HG22 sing N N 129 ILE CG2 HG23 sing N N 130 ILE CD1 HD11 sing N N 131 ILE CD1 HD12 sing N N 132 ILE CD1 HD13 sing N N 133 ILE OXT HXT sing N N 134 LEU N CA sing N N 135 LEU N H sing N N 136 LEU N H2 sing N N 137 LEU CA C sing N N 138 LEU CA CB sing N N 139 LEU CA HA sing N N 140 LEU C O doub N N 141 LEU C OXT sing N N 142 LEU CB CG sing N N 143 LEU CB HB2 sing N N 144 LEU CB HB3 sing N N 145 LEU CG CD1 sing N N 146 LEU CG CD2 sing N N 147 LEU CG HG sing N N 148 LEU CD1 HD11 sing N N 149 LEU CD1 HD12 sing N N 150 LEU CD1 HD13 sing N N 151 LEU CD2 HD21 sing N N 152 LEU CD2 HD22 sing N N 153 LEU CD2 HD23 sing N N 154 LEU OXT HXT sing N N 155 MET N CA sing N N 156 MET N H sing N N 157 MET N H2 sing N N 158 MET CA C sing N N 159 MET CA CB sing N N 160 MET CA HA sing N N 161 MET C O doub N N 162 MET C OXT sing N N 163 MET CB CG sing N N 164 MET CB HB2 sing N N 165 MET CB HB3 sing N N 166 MET CG SD sing N N 167 MET CG HG2 sing N N 168 MET CG HG3 sing N N 169 MET SD CE sing N N 170 MET CE HE1 sing N N 171 MET CE HE2 sing N N 172 MET CE HE3 sing N N 173 MET OXT HXT sing N N 174 PRO N CA sing N N 175 PRO N CD sing N N 176 PRO N H sing N N 177 PRO CA C sing N N 178 PRO CA CB sing N N 179 PRO CA HA sing N N 180 PRO C O doub N N 181 PRO C OXT sing N N 182 PRO CB CG sing N N 183 PRO CB HB2 sing N N 184 PRO CB HB3 sing N N 185 PRO CG CD sing N N 186 PRO CG HG2 sing N N 187 PRO CG HG3 sing N N 188 PRO CD HD2 sing N N 189 PRO CD HD3 sing N N 190 PRO OXT HXT sing N N 191 SER N CA sing N N 192 SER N H sing N N 193 SER N H2 sing N N 194 SER CA C sing N N 195 SER CA CB sing N N 196 SER CA HA sing N N 197 SER C O doub N N 198 SER C OXT sing N N 199 SER CB OG sing N N 200 SER CB HB2 sing N N 201 SER CB HB3 sing N N 202 SER OG HG sing N N 203 SER OXT HXT sing N N 204 THR N CA sing N N 205 THR N H sing N N 206 THR N H2 sing N N 207 THR CA C sing N N 208 THR CA CB sing N N 209 THR CA HA sing N N 210 THR C O doub N N 211 THR C OXT sing N N 212 THR CB OG1 sing N N 213 THR CB CG2 sing N N 214 THR CB HB sing N N 215 THR OG1 HG1 sing N N 216 THR CG2 HG21 sing N N 217 THR CG2 HG22 sing N N 218 THR CG2 HG23 sing N N 219 THR OXT HXT sing N N 220 TYR N CA sing N N 221 TYR N H sing N N 222 TYR N H2 sing N N 223 TYR CA C sing N N 224 TYR CA CB sing N N 225 TYR CA HA sing N N 226 TYR C O doub N N 227 TYR C OXT sing N N 228 TYR CB CG sing N N 229 TYR CB HB2 sing N N 230 TYR CB HB3 sing N N 231 TYR CG CD1 doub Y N 232 TYR CG CD2 sing Y N 233 TYR CD1 CE1 sing Y N 234 TYR CD1 HD1 sing N N 235 TYR CD2 CE2 doub Y N 236 TYR CD2 HD2 sing N N 237 TYR CE1 CZ doub Y N 238 TYR CE1 HE1 sing N N 239 TYR CE2 CZ sing Y N 240 TYR CE2 HE2 sing N N 241 TYR CZ OH sing N N 242 TYR OH HH sing N N 243 TYR OXT HXT sing N N 244 VAL N CA sing N N 245 VAL N H sing N N 246 VAL N H2 sing N N 247 VAL CA C sing N N 248 VAL CA CB sing N N 249 VAL CA HA sing N N 250 VAL C O doub N N 251 VAL C OXT sing N N 252 VAL CB CG1 sing N N 253 VAL CB CG2 sing N N 254 VAL CB HB sing N N 255 VAL CG1 HG11 sing N N 256 VAL CG1 HG12 sing N N 257 VAL CG1 HG13 sing N N 258 VAL CG2 HG21 sing N N 259 VAL CG2 HG22 sing N N 260 VAL CG2 HG23 sing N N 261 VAL OXT HXT sing N N 262 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' MCB-1412164 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P20GM103546 2 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'P43 UBA-1 Y188G Structure Solved by Sulfur SAD' # _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.IT_number 4 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 6W2G _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.033910 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000822 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024950 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030411 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_