HEADER VIRAL PROTEIN 10-MAR-20 6W4H TITLE 1.80 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NSP16 - NSP10 COMPLEX TITLE 2 FROM SARS-COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 6799-7096; COMPND 5 SYNONYM: NON-STRUCTURAL PROTEIN 16,NSP16,SARS-COV-2 NSP16; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 4254-4392; COMPND 12 SYNONYM: NSP10,GROWTH FACTOR-LIKE PEPTIDE,GFL,SARS-COV-2 NSP10; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_COMMON: 2019-NCOV; SOURCE 16 ORGANISM_TAXID: 2697049; SOURCE 17 GENE: REP, 1A-1B; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NSP16, NSP10, COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,M.ROSAS-LEMUS,O.KIRYUKHINA,G.WIERSUM,A.GODZIK, AUTHOR 2 L.JAROSZEWSKI,P.J.STOGIOS,T.SKARINA,K.J.F.SATCHELL,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 18-OCT-23 6W4H 1 JRNL REVDAT 5 27-JAN-21 6W4H 1 COMPND JRNL HETSYN REVDAT 4 29-JUL-20 6W4H 1 COMPND REMARK HETNAM SITE REVDAT 3 06-MAY-20 6W4H 1 COMPND SOURCE DBREF SEQADV REVDAT 2 01-APR-20 6W4H 1 COMPND REVDAT 1 18-MAR-20 6W4H 0 JRNL AUTH M.ROSAS-LEMUS,G.MINASOV,L.SHUVALOVA,N.L.INNISS,O.KIRYUKHINA, JRNL AUTH 2 J.BRUNZELLE,K.J.F.SATCHELL JRNL TITL HIGH-RESOLUTION STRUCTURES OF THE SARS-COV-2 2'- O JRNL TITL 2 -METHYLTRANSFERASE REVEAL STRATEGIES FOR STRUCTURE-BASED JRNL TITL 3 INHIBITOR DESIGN. JRNL REF SCI.SIGNAL. V. 13 2020 JRNL REFN ESSN 1937-9145 JRNL PMID 32994211 JRNL DOI 10.1126/SCISIGNAL.ABE1202 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ROSAS-LEMUS,G.MINASOV,L.SHUVALOVA,N.L.INNISS,O.KIRYUKHINA, REMARK 1 AUTH 2 G.WIERSUM,Y.KIM,R.JEDRZEJCZAK,N.I.MALTSEVA,M.ENDRES, REMARK 1 AUTH 3 L.JAROSZEWSKI,A.GODZIK,A.JOACHIMIAK,K.J.F.SATCHELL REMARK 1 TITL THE CRYSTAL STRUCTURE OF NSP10-NSP16 HETERODIMER FROM REMARK 1 TITL 2 SARS-COV-2 IN COMPLEX WITH S-ADENOSYLMETHIONINE. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 32511376 REMARK 1 DOI 10.1101/2020.04.17.047498 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3697 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3336 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5072 ; 1.183 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7788 ; 0.321 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 3.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;27.951 ;23.614 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 617 ; 8.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 6.592 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4271 ; 0.055 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 754 ; 0.051 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6798 A 6827 REMARK 3 ORIGIN FOR THE GROUP (A): 92.7106 37.5769 33.6726 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0521 REMARK 3 T33: 0.1420 T12: -0.0205 REMARK 3 T13: -0.0123 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 2.8328 L22: 1.4376 REMARK 3 L33: 2.2037 L12: 0.1141 REMARK 3 L13: 0.6504 L23: 0.2818 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.1785 S13: 0.4034 REMARK 3 S21: 0.1046 S22: 0.0545 S23: -0.1822 REMARK 3 S31: -0.1433 S32: 0.1214 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6828 A 6932 REMARK 3 ORIGIN FOR THE GROUP (A): 84.8509 20.0354 18.6950 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0192 REMARK 3 T33: 0.0180 T12: -0.0232 REMARK 3 T13: -0.0076 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1583 L22: 1.9178 REMARK 3 L33: 0.7927 L12: -0.0499 REMARK 3 L13: 0.1649 L23: 0.3623 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.0719 S13: -0.0399 REMARK 3 S21: -0.2093 S22: 0.1018 S23: 0.0202 REMARK 3 S31: 0.0562 S32: 0.0147 S33: -0.0869 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6933 A 6956 REMARK 3 ORIGIN FOR THE GROUP (A): 93.6483 16.9856 35.6139 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.0527 REMARK 3 T33: 0.0288 T12: 0.0043 REMARK 3 T13: -0.0455 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.5538 L22: 3.8901 REMARK 3 L33: 5.7842 L12: -0.6515 REMARK 3 L13: -1.2383 L23: 2.9366 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: -0.1924 S13: -0.1545 REMARK 3 S21: 0.4604 S22: 0.0523 S23: -0.1975 REMARK 3 S31: 0.4097 S32: -0.1119 S33: -0.1534 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6957 A 7048 REMARK 3 ORIGIN FOR THE GROUP (A): 94.2818 28.8532 26.9016 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0393 REMARK 3 T33: 0.0617 T12: -0.0207 REMARK 3 T13: 0.0071 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.0247 L22: 1.4906 REMARK 3 L33: 1.0888 L12: 0.2122 REMARK 3 L13: 0.0595 L23: 0.3060 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.0547 S13: 0.1098 REMARK 3 S21: -0.0019 S22: 0.1340 S23: -0.2202 REMARK 3 S31: -0.0136 S32: 0.1503 S33: -0.1021 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7049 A 7065 REMARK 3 ORIGIN FOR THE GROUP (A): 101.8656 23.0792 6.3974 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.0346 REMARK 3 T33: 0.0477 T12: -0.0461 REMARK 3 T13: 0.0435 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 7.7604 L22: 2.5286 REMARK 3 L33: 1.0699 L12: -2.7017 REMARK 3 L13: -0.6614 L23: 0.4493 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.1631 S13: 0.2645 REMARK 3 S21: -0.1341 S22: 0.0870 S23: -0.3117 REMARK 3 S31: -0.0419 S32: 0.0750 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7066 A 7096 REMARK 3 ORIGIN FOR THE GROUP (A): 100.7636 15.4269 12.2787 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.1119 REMARK 3 T33: 0.1198 T12: -0.0228 REMARK 3 T13: 0.0944 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 0.9004 L22: 5.7587 REMARK 3 L33: 1.2851 L12: 1.3876 REMARK 3 L13: -0.0168 L23: -1.3622 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0893 S13: -0.1138 REMARK 3 S21: -0.2651 S22: 0.0967 S23: -0.4347 REMARK 3 S31: 0.0410 S32: 0.2319 S33: -0.0940 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4271 B 4288 REMARK 3 ORIGIN FOR THE GROUP (A): 56.0951 4.7767 15.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0845 REMARK 3 T33: 0.3435 T12: -0.0624 REMARK 3 T13: -0.0536 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.2654 L22: 11.9433 REMARK 3 L33: 1.3971 L12: -1.7056 REMARK 3 L13: -0.2773 L23: 0.8343 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.0327 S13: -0.1424 REMARK 3 S21: -0.4528 S22: -0.2131 S23: 0.7220 REMARK 3 S31: 0.1344 S32: -0.1350 S33: 0.1643 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4289 B 4344 REMARK 3 RESIDUE RANGE : S 1 S 1 REMARK 3 ORIGIN FOR THE GROUP (A): 69.0475 17.8217 10.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.0577 REMARK 3 T33: 0.1077 T12: -0.0322 REMARK 3 T13: -0.1024 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.2104 L22: 3.6373 REMARK 3 L33: 1.6256 L12: -0.0143 REMARK 3 L13: -0.0847 L23: -0.5394 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.3024 S13: -0.1843 REMARK 3 S21: -0.4276 S22: 0.0520 S23: 0.4007 REMARK 3 S31: 0.1414 S32: -0.1435 S33: -0.0277 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4345 B 4386 REMARK 3 RESIDUE RANGE : S 2 S 2 REMARK 3 ORIGIN FOR THE GROUP (A): 62.4718 19.8901 4.2832 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.1631 REMARK 3 T33: 0.2055 T12: -0.0525 REMARK 3 T13: -0.1997 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.3852 L22: 2.7319 REMARK 3 L33: 2.7697 L12: -0.3080 REMARK 3 L13: -0.6470 L23: -1.2904 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.5496 S13: -0.2003 REMARK 3 S21: -0.5509 S22: 0.0720 S23: 0.6134 REMARK 3 S31: 0.2313 S32: -0.3482 S33: -0.1169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6W4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : 0.76500 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3R24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.3 MG/ML 1:1 NSP16/NSP10 IN 0.15 M REMARK 280 SODIUM CHLORIDE, 0.01 M TRIS, PH 7.5, 2 MM SAM, 1 MM TCEP, 5% REMARK 280 GLYCEROL AGAINST COMPAS SCREEN A7 (0.2 M CALCIUM ACETATE, 0.1 M REMARK 280 HEPES, PH 7.5, 18% W/V PEG 8000), CRYOPROTECTANT: 1:1 SCREEN + REMARK 280 50% SUCROSE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.31400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.62800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.62800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.31400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 6796 REMARK 465 ASN A 6797 REMARK 465 SER B 4251 REMARK 465 ASN B 4252 REMARK 465 ALA B 4253 REMARK 465 ALA B 4254 REMARK 465 GLY B 4255 REMARK 465 ASN B 4256 REMARK 465 ALA B 4257 REMARK 465 THR B 4258 REMARK 465 GLU B 4259 REMARK 465 VAL B 4260 REMARK 465 PRO B 4261 REMARK 465 ALA B 4262 REMARK 465 ASN B 4263 REMARK 465 SER B 4264 REMARK 465 THR B 4265 REMARK 465 VAL B 4266 REMARK 465 LEU B 4267 REMARK 465 SER B 4268 REMARK 465 PHE B 4269 REMARK 465 CYS B 4270 REMARK 465 ARG B 4387 REMARK 465 GLU B 4388 REMARK 465 PRO B 4389 REMARK 465 MET B 4390 REMARK 465 LEU B 4391 REMARK 465 GLN B 4392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A6945 -109.86 -100.79 REMARK 500 GLU A6945 -108.41 -99.92 REMARK 500 ASN A7008 87.84 73.73 REMARK 500 ASP B4275 79.68 -107.97 REMARK 500 ASN B4338 154.34 179.41 REMARK 500 LYS B4340 -15.07 84.03 REMARK 500 TYR B4379 46.38 -141.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4327 SG REMARK 620 2 CYS B4330 SG 114.5 REMARK 620 3 HIS B4336 NE2 104.9 111.6 REMARK 620 4 CYS B4343 SG 110.4 114.0 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B4370 SG REMARK 620 2 CYS B4373 SG 105.7 REMARK 620 3 CYS B4381 SG 102.9 111.5 REMARK 620 4 CYS B4383 SG 110.8 117.2 107.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP51000 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: SCGID-IDP51000 RELATED DB: TARGETTRACK DBREF 6W4H A 6799 7096 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 6W4H B 4254 4392 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 6W4H SER A 6796 UNP P0DTD1 EXPRESSION TAG SEQADV 6W4H ASN A 6797 UNP P0DTD1 EXPRESSION TAG SEQADV 6W4H ALA A 6798 UNP P0DTD1 EXPRESSION TAG SEQADV 6W4H SER B 4251 UNP P0DTD1 EXPRESSION TAG SEQADV 6W4H ASN B 4252 UNP P0DTD1 EXPRESSION TAG SEQADV 6W4H ALA B 4253 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 A 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 A 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 A 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 A 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 A 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 A 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 A 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 A 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 A 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 A 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 A 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 A 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 A 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 A 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 A 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 A 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 A 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 A 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 A 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 A 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 A 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 A 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 A 301 ASN ASN SEQRES 1 B 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 B 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 B 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 B 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 B 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 B 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 B 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 B 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 B 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 B 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 B 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN HET SO3 A7101 4 HET SAM A7102 27 HET ACT A7103 4 HET ACT A7104 4 HET BDF A7105 12 HET ZN B4401 1 HET ZN B4402 1 HET BDF B4403 12 HETNAM SO3 SULFITE ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ACT ACETATE ION HETNAM BDF BETA-D-FRUCTOPYRANOSE HETNAM ZN ZINC ION HETSYN BDF BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 SO3 O3 S 2- FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 BDF 2(C6 H12 O6) FORMUL 8 ZN 2(ZN 2+) FORMUL 11 HOH *442(H2 O) HELIX 1 AA1 SER A 6799 GLN A 6804 5 6 HELIX 2 AA2 PRO A 6810 MET A 6815 1 6 HELIX 3 AA3 MET A 6839 ASN A 6853 1 15 HELIX 4 AA4 ALA A 6877 LEU A 6887 1 11 HELIX 5 AA5 ASP A 6912 ALA A 6914 5 3 HELIX 6 AA6 ASP A 6931 LYS A 6935 5 5 HELIX 7 AA7 GLY A 6946 LYS A 6958 1 13 HELIX 8 AA8 ASN A 6975 GLY A 6983 1 9 HELIX 9 AA9 ASP A 7018 ASN A 7033 1 16 HELIX 10 AB1 SER A 7039 ASP A 7044 5 6 HELIX 11 AB2 LYS A 7061 ILE A 7065 5 5 HELIX 12 AB3 ASN A 7066 LYS A 7075 1 10 HELIX 13 AB4 ASP B 4275 SER B 4286 1 12 HELIX 14 AB5 ALA B 4324 CYS B 4326 5 3 HELIX 15 AB6 CYS B 4327 HIS B 4333 1 7 HELIX 16 AB7 ASN B 4338 PHE B 4342 5 5 HELIX 17 AB8 THR B 4355 ALA B 4357 5 3 HELIX 18 AB9 ASP B 4359 ASN B 4367 1 9 SHEET 1 AA1 8 GLY A6806 ALA A6808 0 SHEET 2 AA1 8 PHE A6985 THR A6993 -1 O VAL A6992 N VAL A6807 SHEET 3 AA1 8 ALA A7002 TYR A7009 -1 O CYS A7007 N TRP A6987 SHEET 4 AA1 8 LEU A6959 ILE A6969 -1 N ILE A6967 O LEU A7004 SHEET 5 AA1 8 TRP A6922 SER A6927 1 N TRP A6922 O ALA A6960 SHEET 6 AA1 8 ARG A6864 PHE A6868 1 N PHE A6868 O ILE A6926 SHEET 7 AA1 8 LEU A6892 ASP A6897 1 O LEU A6892 N VAL A6865 SHEET 8 AA1 8 SER A6907 ILE A6910 1 O LEU A6909 N ASP A6895 SHEET 1 AA2 2 VAL A6916 THR A6918 0 SHEET 2 AA2 2 ILE A7088 SER A7090 -1 O SER A7089 N HIS A6917 SHEET 1 AA3 2 ALA A7056 MET A7058 0 SHEET 2 AA3 2 LEU A7078 ILE A7080 1 O ILE A7079 N MET A7058 SHEET 1 AA4 3 ILE B4308 THR B4309 0 SHEET 2 AA4 3 TYR B4349 PRO B4353 -1 O TYR B4349 N THR B4309 SHEET 3 AA4 3 GLN B4318 GLY B4322 -1 N GLU B4319 O ILE B4352 SHEET 1 AA5 2 TRP B4376 LYS B4377 0 SHEET 2 AA5 2 GLY B4380 CYS B4381 1 O CYS B4381 N TRP B4376 LINK SG CYS B4327 ZN ZN B4401 1555 1555 2.30 LINK SG CYS B4330 ZN ZN B4401 1555 1555 2.32 LINK NE2 HIS B4336 ZN ZN B4401 1555 1555 2.01 LINK SG CYS B4343 ZN ZN B4401 1555 1555 2.32 LINK SG CYS B4370 ZN ZN B4402 1555 1555 2.32 LINK SG CYS B4373 ZN ZN B4402 1555 1555 2.33 LINK SG CYS B4381 ZN ZN B4402 1555 1555 2.33 LINK SG CYS B4383 ZN ZN B4402 1555 1555 2.33 CRYST1 167.740 167.740 51.942 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005962 0.003442 0.000000 0.00000 SCALE2 0.000000 0.006884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019252 0.00000