data_6W9Y # _entry.id 6W9Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6W9Y pdb_00006w9y 10.2210/pdb6w9y/pdb WWPDB D_1000247795 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6W9Y _pdbx_database_status.recvd_initial_deposition_date 2020-03-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Call, M.J.' 1 0000-0001-7684-5841 'Call, M.E.' 2 0000-0001-5846-6469 'Chandler, N.J.' 3 0000-0003-4093-7503 'Nguyen, J.V.' 4 0000-0003-1855-1751 'Trenker, R.' 5 0000-0003-1748-0517 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Elazar, A.' 1 0000-0002-5281-0908 primary 'Chandler, N.J.' 2 0000-0003-4093-7503 primary 'Davey, A.S.' 3 0000-0001-8372-7894 primary 'Weinstein, J.Y.' 4 0000-0001-7581-965X primary 'Nguyen, J.V.' 5 0000-0003-1855-1751 primary 'Trenker, R.' 6 0000-0003-1748-0517 primary 'Jenkins, M.' 7 0000-0001-6564-2715 primary 'Call, M.J.' 8 0000-0001-7684-5841 primary 'Call, M.E.' 9 0000-0001-5846-6469 primary 'Fleishman, S.J.' 10 0000-0002-6831-3770 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6W9Y _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.489 _cell.length_a_esd ? _cell.length_b 64.975 _cell.length_b_esd ? _cell.length_c 85.160 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6W9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'De novo designed receptor transmembrane domain proMP 1.2' 3290.124 4 ? ? ? ? 2 non-polymer syn '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 356.540 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'EPELLFILVAILGGLFGAIVAFLLALRRL(SCH)' _entity_poly.pdbx_seq_one_letter_code_can EPELLFILVAILGGLFGAIVAFLLALRRLC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PRO n 1 3 GLU n 1 4 LEU n 1 5 LEU n 1 6 PHE n 1 7 ILE n 1 8 LEU n 1 9 VAL n 1 10 ALA n 1 11 ILE n 1 12 LEU n 1 13 GLY n 1 14 GLY n 1 15 LEU n 1 16 PHE n 1 17 GLY n 1 18 ALA n 1 19 ILE n 1 20 VAL n 1 21 ALA n 1 22 PHE n 1 23 LEU n 1 24 LEU n 1 25 ALA n 1 26 LEU n 1 27 ARG n 1 28 ARG n 1 29 LEU n 1 30 SCH n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 30 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pMM-TrpLE fusion' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6W9Y _struct_ref.pdbx_db_accession 6W9Y _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6W9Y A 1 ? 30 ? 6W9Y 1 ? 30 ? 1 30 2 1 6W9Y B 1 ? 30 ? 6W9Y 1 ? 30 ? 1 30 3 1 6W9Y C 1 ? 30 ? 6W9Y 1 ? 30 ? 1 30 4 1 6W9Y D 1 ? 30 ? 6W9Y 1 ? 30 ? 1 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 OLB non-polymer . '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' ? 'C21 H40 O4' 356.540 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCH 'L-peptide linking' n S-METHYL-THIO-CYSTEINE ? 'C4 H9 N O2 S2' 167.250 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6W9Y _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.38 _exptl_crystal.description 'hexagonal discs' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;35 mg/ml peptide in LCP 25% w/v poly(ethylene glycol) 1500 10% v/v succinate-phosphate-glycine pH 6.0 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'Cryo Stream' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.953737 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.953737 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate 60.27 _reflns.entry_id 6W9Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.550 _reflns.d_resolution_low 32.35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3956 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.94 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.900 _reflns.pdbx_Rmerge_I_obs 0.06635 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.72 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all .07495 _reflns.pdbx_Rpim_I_all 0.0338 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.550 _reflns_shell.d_res_low 2.641 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.41 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 381 _reflns_shell.percent_possible_all 97.14 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.5728 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.6397 _reflns_shell.pdbx_Rpim_I_all 0.2793 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.936 _reflns_shell.pdbx_CC_star 0.983 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 171.980 _refine.B_iso_mean 86.13 _refine.B_iso_min 41.720 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6W9Y _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5500 _refine.ls_d_res_low 32.35 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3956 _refine.ls_number_reflns_R_free 395 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.94 _refine.ls_percent_reflns_R_free 10.0400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.3259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2773 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5EH6 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 41.4100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.5500 _refine_hist.d_res_low 32.35 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 840 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 108 _refine_hist.pdbx_B_iso_mean_ligand 88.42 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 815 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.55 _refine_ls_shell.d_res_low 2.641 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_R_work 381 _refine_ls_shell.percent_reflns_obs 97.14 _refine_ls_shell.percent_reflns_R_free 10 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2793 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3131 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6W9Y _struct.title 'De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6W9Y _struct_keywords.text 'Transmembrane domain, de novo design, BIOSYNTHETIC PROTEIN' _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 2 ? LEU A 29 ? PRO A 2 LEU A 29 1 ? 28 HELX_P HELX_P2 AA2 GLU B 3 ? LEU B 29 ? GLU B 3 LEU B 29 1 ? 27 HELX_P HELX_P3 AA3 GLU C 3 ? LEU C 29 ? GLU C 3 LEU C 29 1 ? 27 HELX_P HELX_P4 AA4 LEU D 4 ? LEU D 26 ? LEU D 4 LEU D 26 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id OLB _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue OLB A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ALA A 18 ? ALA A 18 . ? 1_555 ? 2 AC1 8 ILE A 19 ? ILE A 19 . ? 1_555 ? 3 AC1 8 PHE A 22 ? PHE A 22 . ? 1_555 ? 4 AC1 8 ALA B 21 ? ALA B 21 . ? 1_555 ? 5 AC1 8 PHE B 22 ? PHE B 22 . ? 1_555 ? 6 AC1 8 ALA B 25 ? ALA B 25 . ? 1_555 ? 7 AC1 8 LEU B 29 ? LEU B 29 . ? 3_554 ? 8 AC1 8 PHE C 22 ? PHE C 22 . ? 1_555 ? # _atom_sites.entry_id 6W9Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024103 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011743 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 SCH 30 30 ? ? ? A . n B 1 1 GLU 1 1 ? ? ? B . n B 1 2 PRO 2 2 2 PRO PRO B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 PHE 16 16 16 PHE PHE B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 SCH 30 30 ? ? ? B . n C 1 1 GLU 1 1 ? ? ? C . n C 1 2 PRO 2 2 2 PRO PRO C . n C 1 3 GLU 3 3 3 GLU GLU C . n C 1 4 LEU 4 4 4 LEU LEU C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 PHE 6 6 6 PHE PHE C . n C 1 7 ILE 7 7 7 ILE ILE C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 VAL 9 9 9 VAL VAL C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 PHE 16 16 16 PHE PHE C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 ALA 18 18 18 ALA ALA C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 VAL 20 20 20 VAL VAL C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 PHE 22 22 22 PHE PHE C . n C 1 23 LEU 23 23 23 LEU LEU C . n C 1 24 LEU 24 24 24 LEU LEU C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 LEU 26 26 26 LEU LEU C . n C 1 27 ARG 27 27 27 ARG ARG C . n C 1 28 ARG 28 28 28 ARG ARG C . n C 1 29 LEU 29 29 29 LEU LEU C . n C 1 30 SCH 30 30 ? ? ? C . n D 1 1 GLU 1 1 ? ? ? D . n D 1 2 PRO 2 2 ? ? ? D . n D 1 3 GLU 3 3 3 GLU GLU D . n D 1 4 LEU 4 4 4 LEU LEU D . n D 1 5 LEU 5 5 5 LEU LEU D . n D 1 6 PHE 6 6 6 PHE PHE D . n D 1 7 ILE 7 7 7 ILE ILE D . n D 1 8 LEU 8 8 8 LEU LEU D . n D 1 9 VAL 9 9 9 VAL VAL D . n D 1 10 ALA 10 10 10 ALA ALA D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 GLY 13 13 13 GLY GLY D . n D 1 14 GLY 14 14 14 GLY GLY D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 PHE 16 16 16 PHE PHE D . n D 1 17 GLY 17 17 17 GLY GLY D . n D 1 18 ALA 18 18 18 ALA ALA D . n D 1 19 ILE 19 19 19 ILE ILE D . n D 1 20 VAL 20 20 20 VAL VAL D . n D 1 21 ALA 21 21 21 ALA ALA D . n D 1 22 PHE 22 22 22 PHE PHE D . n D 1 23 LEU 23 23 23 LEU LEU D . n D 1 24 LEU 24 24 24 LEU LEU D . n D 1 25 ALA 25 25 25 ALA ALA D . n D 1 26 LEU 26 26 26 LEU LEU D . n D 1 27 ARG 27 27 ? ? ? D . n D 1 28 ARG 28 28 ? ? ? D . n D 1 29 LEU 29 29 ? ? ? D . n D 1 30 SCH 30 30 ? ? ? D . n # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id OLB _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id OLB _pdbx_nonpoly_scheme.auth_mon_id OLB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,E 2 1 D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2200 ? 1 MORE -28 ? 1 'SSA (A^2)' 6690 ? 2 'ABSA (A^2)' 0 ? 2 MORE 0 ? 2 'SSA (A^2)' 2460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-31 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -3.2302 13.4433 -5.8795 0.4210 ? -0.1374 ? 0.0306 ? 0.8757 ? 0.0210 ? 0.5771 ? 8.2973 ? -2.2942 ? 1.7583 ? 2.4077 ? -0.3130 ? 2.3385 ? 0.0016 ? -0.0422 ? 0.2964 ? -0.1715 ? 0.0734 ? 0.2664 ? -0.3509 ? -1.7547 ? -0.3180 ? 2 'X-RAY DIFFRACTION' ? refined 5.2170 14.5074 -4.5679 0.3000 ? -0.0214 ? 0.0523 ? 0.6207 ? 0.1498 ? 0.4603 ? 5.3966 ? -0.5418 ? 1.5708 ? 8.0593 ? 6.1014 ? 9.8880 ? -0.0712 ? 0.7479 ? -0.4375 ? -0.4068 ? 0.3431 ? -0.6538 ? -0.1839 ? 1.2677 ? -0.4525 ? 3 'X-RAY DIFFRACTION' ? refined -0.3524 19.9087 -2.3130 0.5891 ? 0.0350 ? 0.0558 ? 0.6135 ? -0.0033 ? 0.4908 ? 8.2630 ? 1.7551 ? -1.7410 ? 9.2366 ? -0.3482 ? 2.2997 ? -0.1791 ? -0.8868 ? -0.2956 ? 0.0984 ? -0.0444 ? -0.8027 ? -1.2829 ? 0.0850 ? 0.5363 ? 4 'X-RAY DIFFRACTION' ? refined -6.3792 26.6499 -1.1003 0.9821 ? 0.0890 ? 0.1508 ? 1.0313 ? 0.0174 ? 0.7429 ? 6.0701 ? 2.0878 ? 2.3458 ? 8.0105 ? 4.9765 ? 3.2949 ? -0.0426 ? -0.1207 ? 0.6840 ? -1.6622 ? -0.1478 ? -0.7556 ? -0.4239 ? -0.5392 ? 0.3426 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 2 ? ? A 29 ? ;chain 'A' and (resid 2 through 29 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? B 2 ? ? B 29 ? ;chain 'B' and (resid 2 through 29 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? C 2 ? ? C 29 ? ;chain 'C' and (resid 2 through 29 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? D 3 ? ? D 26 ? ;chain 'D' and (resid 3 through 26 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Mar 15, 2019 BUILT=20190315' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.2 4 # _pdbx_entry_details.entry_id 6W9Y _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 1 ? A GLU 1 2 1 Y 1 A SCH 30 ? A SCH 30 3 1 Y 1 B GLU 1 ? B GLU 1 4 1 Y 1 B SCH 30 ? B SCH 30 5 1 Y 1 C GLU 1 ? C GLU 1 6 1 Y 1 C SCH 30 ? C SCH 30 7 1 Y 1 D GLU 1 ? D GLU 1 8 1 Y 1 D PRO 2 ? D PRO 2 9 1 Y 1 D ARG 27 ? D ARG 27 10 1 Y 1 D ARG 28 ? D ARG 28 11 1 Y 1 D LEU 29 ? D LEU 29 12 1 Y 1 D SCH 30 ? D SCH 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 GLU N N N N 41 GLU CA C N S 42 GLU C C N N 43 GLU O O N N 44 GLU CB C N N 45 GLU CG C N N 46 GLU CD C N N 47 GLU OE1 O N N 48 GLU OE2 O N N 49 GLU OXT O N N 50 GLU H H N N 51 GLU H2 H N N 52 GLU HA H N N 53 GLU HB2 H N N 54 GLU HB3 H N N 55 GLU HG2 H N N 56 GLU HG3 H N N 57 GLU HE2 H N N 58 GLU HXT H N N 59 GLY N N N N 60 GLY CA C N N 61 GLY C C N N 62 GLY O O N N 63 GLY OXT O N N 64 GLY H H N N 65 GLY H2 H N N 66 GLY HA2 H N N 67 GLY HA3 H N N 68 GLY HXT H N N 69 ILE N N N N 70 ILE CA C N S 71 ILE C C N N 72 ILE O O N N 73 ILE CB C N S 74 ILE CG1 C N N 75 ILE CG2 C N N 76 ILE CD1 C N N 77 ILE OXT O N N 78 ILE H H N N 79 ILE H2 H N N 80 ILE HA H N N 81 ILE HB H N N 82 ILE HG12 H N N 83 ILE HG13 H N N 84 ILE HG21 H N N 85 ILE HG22 H N N 86 ILE HG23 H N N 87 ILE HD11 H N N 88 ILE HD12 H N N 89 ILE HD13 H N N 90 ILE HXT H N N 91 LEU N N N N 92 LEU CA C N S 93 LEU C C N N 94 LEU O O N N 95 LEU CB C N N 96 LEU CG C N N 97 LEU CD1 C N N 98 LEU CD2 C N N 99 LEU OXT O N N 100 LEU H H N N 101 LEU H2 H N N 102 LEU HA H N N 103 LEU HB2 H N N 104 LEU HB3 H N N 105 LEU HG H N N 106 LEU HD11 H N N 107 LEU HD12 H N N 108 LEU HD13 H N N 109 LEU HD21 H N N 110 LEU HD22 H N N 111 LEU HD23 H N N 112 LEU HXT H N N 113 OLB C1 C N N 114 OLB C2 C N N 115 OLB C3 C N N 116 OLB C4 C N N 117 OLB C5 C N N 118 OLB O19 O N N 119 OLB O20 O N N 120 OLB C21 C N N 121 OLB C22 C N S 122 OLB O23 O N N 123 OLB C24 C N N 124 OLB O25 O N N 125 OLB C6 C N N 126 OLB C7 C N N 127 OLB C8 C N N 128 OLB C9 C N N 129 OLB C10 C N N 130 OLB C11 C N N 131 OLB H2 H N N 132 OLB H2A H N N 133 OLB H3 H N N 134 OLB H3A H N N 135 OLB H4 H N N 136 OLB H4A H N N 137 OLB H5 H N N 138 OLB H5A H N N 139 OLB H21 H N N 140 OLB H21A H N N 141 OLB H22 H N N 142 OLB HO23 H N N 143 OLB H24 H N N 144 OLB H24A H N N 145 OLB HO25 H N N 146 OLB H16 H N N 147 OLB H17 H N N 148 OLB H18 H N N 149 OLB H19 H N N 150 OLB H20 H N N 151 OLB H211 H N N 152 OLB H221 H N N 153 OLB H23 H N N 154 OLB H241 H N N 155 OLB H25 H N N 156 OLB C12 C N N 157 OLB H26 H N N 158 OLB C13 C N N 159 OLB H27 H N N 160 OLB C14 C N N 161 OLB H28 H N N 162 OLB H29 H N N 163 OLB H30 H N N 164 OLB H31 H N N 165 OLB C15 C N N 166 OLB C16 C N N 167 OLB H32 H N N 168 OLB H33 H N N 169 OLB H34 H N N 170 OLB H35 H N N 171 OLB C17 C N N 172 OLB C18 C N N 173 OLB H36 H N N 174 OLB H37 H N N 175 OLB H38 H N N 176 OLB H39 H N N 177 OLB H40 H N N 178 PHE N N N N 179 PHE CA C N S 180 PHE C C N N 181 PHE O O N N 182 PHE CB C N N 183 PHE CG C Y N 184 PHE CD1 C Y N 185 PHE CD2 C Y N 186 PHE CE1 C Y N 187 PHE CE2 C Y N 188 PHE CZ C Y N 189 PHE OXT O N N 190 PHE H H N N 191 PHE H2 H N N 192 PHE HA H N N 193 PHE HB2 H N N 194 PHE HB3 H N N 195 PHE HD1 H N N 196 PHE HD2 H N N 197 PHE HE1 H N N 198 PHE HE2 H N N 199 PHE HZ H N N 200 PHE HXT H N N 201 PRO N N N N 202 PRO CA C N S 203 PRO C C N N 204 PRO O O N N 205 PRO CB C N N 206 PRO CG C N N 207 PRO CD C N N 208 PRO OXT O N N 209 PRO H H N N 210 PRO HA H N N 211 PRO HB2 H N N 212 PRO HB3 H N N 213 PRO HG2 H N N 214 PRO HG3 H N N 215 PRO HD2 H N N 216 PRO HD3 H N N 217 PRO HXT H N N 218 SCH N N N N 219 SCH CA C N R 220 SCH CB C N N 221 SCH SG S N N 222 SCH SD S N N 223 SCH CE C N N 224 SCH C C N N 225 SCH O O N N 226 SCH OXT O N N 227 SCH H H N N 228 SCH H2 H N N 229 SCH HA H N N 230 SCH HB2 H N N 231 SCH HB3 H N N 232 SCH HE1 H N N 233 SCH HE2 H N N 234 SCH HE3 H N N 235 SCH HXT H N N 236 VAL N N N N 237 VAL CA C N S 238 VAL C C N N 239 VAL O O N N 240 VAL CB C N N 241 VAL CG1 C N N 242 VAL CG2 C N N 243 VAL OXT O N N 244 VAL H H N N 245 VAL H2 H N N 246 VAL HA H N N 247 VAL HB H N N 248 VAL HG11 H N N 249 VAL HG12 H N N 250 VAL HG13 H N N 251 VAL HG21 H N N 252 VAL HG22 H N N 253 VAL HG23 H N N 254 VAL HXT H N N 255 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 GLU N CA sing N N 39 GLU N H sing N N 40 GLU N H2 sing N N 41 GLU CA C sing N N 42 GLU CA CB sing N N 43 GLU CA HA sing N N 44 GLU C O doub N N 45 GLU C OXT sing N N 46 GLU CB CG sing N N 47 GLU CB HB2 sing N N 48 GLU CB HB3 sing N N 49 GLU CG CD sing N N 50 GLU CG HG2 sing N N 51 GLU CG HG3 sing N N 52 GLU CD OE1 doub N N 53 GLU CD OE2 sing N N 54 GLU OE2 HE2 sing N N 55 GLU OXT HXT sing N N 56 GLY N CA sing N N 57 GLY N H sing N N 58 GLY N H2 sing N N 59 GLY CA C sing N N 60 GLY CA HA2 sing N N 61 GLY CA HA3 sing N N 62 GLY C O doub N N 63 GLY C OXT sing N N 64 GLY OXT HXT sing N N 65 ILE N CA sing N N 66 ILE N H sing N N 67 ILE N H2 sing N N 68 ILE CA C sing N N 69 ILE CA CB sing N N 70 ILE CA HA sing N N 71 ILE C O doub N N 72 ILE C OXT sing N N 73 ILE CB CG1 sing N N 74 ILE CB CG2 sing N N 75 ILE CB HB sing N N 76 ILE CG1 CD1 sing N N 77 ILE CG1 HG12 sing N N 78 ILE CG1 HG13 sing N N 79 ILE CG2 HG21 sing N N 80 ILE CG2 HG22 sing N N 81 ILE CG2 HG23 sing N N 82 ILE CD1 HD11 sing N N 83 ILE CD1 HD12 sing N N 84 ILE CD1 HD13 sing N N 85 ILE OXT HXT sing N N 86 LEU N CA sing N N 87 LEU N H sing N N 88 LEU N H2 sing N N 89 LEU CA C sing N N 90 LEU CA CB sing N N 91 LEU CA HA sing N N 92 LEU C O doub N N 93 LEU C OXT sing N N 94 LEU CB CG sing N N 95 LEU CB HB2 sing N N 96 LEU CB HB3 sing N N 97 LEU CG CD1 sing N N 98 LEU CG CD2 sing N N 99 LEU CG HG sing N N 100 LEU CD1 HD11 sing N N 101 LEU CD1 HD12 sing N N 102 LEU CD1 HD13 sing N N 103 LEU CD2 HD21 sing N N 104 LEU CD2 HD22 sing N N 105 LEU CD2 HD23 sing N N 106 LEU OXT HXT sing N N 107 OLB C1 O19 doub N N 108 OLB C1 O20 sing N N 109 OLB C2 C1 sing N N 110 OLB C3 C2 sing N N 111 OLB C4 C3 sing N N 112 OLB C5 C4 sing N N 113 OLB C5 C6 sing N N 114 OLB O20 C21 sing N N 115 OLB C21 C22 sing N N 116 OLB C22 C24 sing N N 117 OLB O23 C22 sing N N 118 OLB C24 O25 sing N N 119 OLB C6 C7 sing N N 120 OLB C7 C8 sing N N 121 OLB C8 C9 sing N N 122 OLB C9 C10 doub N Z 123 OLB C10 C11 sing N N 124 OLB C2 H2 sing N N 125 OLB C2 H2A sing N N 126 OLB C3 H3 sing N N 127 OLB C3 H3A sing N N 128 OLB C4 H4 sing N N 129 OLB C4 H4A sing N N 130 OLB C5 H5 sing N N 131 OLB C5 H5A sing N N 132 OLB C21 H21 sing N N 133 OLB C21 H21A sing N N 134 OLB C22 H22 sing N N 135 OLB O23 HO23 sing N N 136 OLB C24 H24 sing N N 137 OLB C24 H24A sing N N 138 OLB O25 HO25 sing N N 139 OLB C6 H16 sing N N 140 OLB C6 H17 sing N N 141 OLB C7 H18 sing N N 142 OLB C7 H19 sing N N 143 OLB C8 H20 sing N N 144 OLB C8 H211 sing N N 145 OLB C9 H221 sing N N 146 OLB C10 H23 sing N N 147 OLB C11 H241 sing N N 148 OLB C11 H25 sing N N 149 OLB C11 C12 sing N N 150 OLB C12 H26 sing N N 151 OLB C12 C13 sing N N 152 OLB C12 H27 sing N N 153 OLB C13 C14 sing N N 154 OLB C13 H28 sing N N 155 OLB C13 H29 sing N N 156 OLB C14 H30 sing N N 157 OLB C14 H31 sing N N 158 OLB C14 C15 sing N N 159 OLB C15 C16 sing N N 160 OLB C15 H32 sing N N 161 OLB C15 H33 sing N N 162 OLB C16 H34 sing N N 163 OLB C16 H35 sing N N 164 OLB C16 C17 sing N N 165 OLB C17 C18 sing N N 166 OLB C17 H36 sing N N 167 OLB C17 H37 sing N N 168 OLB C18 H38 sing N N 169 OLB C18 H39 sing N N 170 OLB C18 H40 sing N N 171 PHE N CA sing N N 172 PHE N H sing N N 173 PHE N H2 sing N N 174 PHE CA C sing N N 175 PHE CA CB sing N N 176 PHE CA HA sing N N 177 PHE C O doub N N 178 PHE C OXT sing N N 179 PHE CB CG sing N N 180 PHE CB HB2 sing N N 181 PHE CB HB3 sing N N 182 PHE CG CD1 doub Y N 183 PHE CG CD2 sing Y N 184 PHE CD1 CE1 sing Y N 185 PHE CD1 HD1 sing N N 186 PHE CD2 CE2 doub Y N 187 PHE CD2 HD2 sing N N 188 PHE CE1 CZ doub Y N 189 PHE CE1 HE1 sing N N 190 PHE CE2 CZ sing Y N 191 PHE CE2 HE2 sing N N 192 PHE CZ HZ sing N N 193 PHE OXT HXT sing N N 194 PRO N CA sing N N 195 PRO N CD sing N N 196 PRO N H sing N N 197 PRO CA C sing N N 198 PRO CA CB sing N N 199 PRO CA HA sing N N 200 PRO C O doub N N 201 PRO C OXT sing N N 202 PRO CB CG sing N N 203 PRO CB HB2 sing N N 204 PRO CB HB3 sing N N 205 PRO CG CD sing N N 206 PRO CG HG2 sing N N 207 PRO CG HG3 sing N N 208 PRO CD HD2 sing N N 209 PRO CD HD3 sing N N 210 PRO OXT HXT sing N N 211 SCH N CA sing N N 212 SCH N H sing N N 213 SCH N H2 sing N N 214 SCH CA CB sing N N 215 SCH CA C sing N N 216 SCH CA HA sing N N 217 SCH CB SG sing N N 218 SCH CB HB2 sing N N 219 SCH CB HB3 sing N N 220 SCH SG SD sing N N 221 SCH SD CE sing N N 222 SCH CE HE1 sing N N 223 SCH CE HE2 sing N N 224 SCH CE HE3 sing N N 225 SCH C O doub N N 226 SCH C OXT sing N N 227 SCH OXT HXT sing N N 228 VAL N CA sing N N 229 VAL N H sing N N 230 VAL N H2 sing N N 231 VAL CA C sing N N 232 VAL CA CB sing N N 233 VAL CA HA sing N N 234 VAL C O doub N N 235 VAL C OXT sing N N 236 VAL CB CG1 sing N N 237 VAL CB CG2 sing N N 238 VAL CB HB sing N N 239 VAL CG1 HG11 sing N N 240 VAL CG1 HG12 sing N N 241 VAL CG1 HG13 sing N N 242 VAL CG2 HG21 sing N N 243 VAL CG2 HG22 sing N N 244 VAL CG2 HG23 sing N N 245 VAL OXT HXT sing N N 246 # _pdbx_audit_support.funding_organization 'National Health and Medical Research Council (NHMRC, Australia)' _pdbx_audit_support.country Australia _pdbx_audit_support.grant_number APP1158249 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _pdbx_entity_nonpoly.comp_id OLB # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5EH6 _pdbx_initial_refinement_model.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'Deep sequencing - ToxCAT beta-Lactamase assay in E.coli' 2 1 'native gel electrophoresis' 'Heat resistant oligomerization in SDS-PAGE' # _space_group.crystal_system orthorhombic _space_group.name_H-M_alt 'C 2 2 21' _space_group.IT_number 20 _space_group.name_Hall 'C 2c 2' _space_group.id 1 #