HEADER TRANSCRIPTION 14-APR-20 6WJQ TITLE CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WIN PEPTIDE OF PDPK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: HPDK1; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS WDR5, PDPK1, CHROMATIN, SIGNALING, WIN, ACETYLATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,S.FESIK REVDAT 2 18-OCT-23 6WJQ 1 REMARK REVDAT 1 13-JAN-21 6WJQ 0 JRNL AUTH B.ZHAO,S.FESIK JRNL TITL CRYSTAL STRUCTURE OF WDR5 IN COMPLEX WITH THE WIN PEPTIDE OF JRNL TITL 2 PDPK1 JRNL REF CELL REP 2021 JRNL REFN ESSN 2211-1247 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 15684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7400 - 6.0000 0.93 1346 145 0.2021 0.2360 REMARK 3 2 6.0000 - 4.7700 0.98 1375 153 0.2000 0.1996 REMARK 3 3 4.7700 - 4.1700 0.98 1371 154 0.1785 0.2121 REMARK 3 4 4.1700 - 3.7900 0.97 1314 154 0.2026 0.2275 REMARK 3 5 3.7900 - 3.5200 0.96 1330 146 0.2148 0.2431 REMARK 3 6 3.5200 - 3.3100 0.95 1303 148 0.2212 0.2689 REMARK 3 7 3.3100 - 3.1500 0.94 1253 143 0.2507 0.2775 REMARK 3 8 3.1500 - 3.0100 0.91 1276 141 0.2809 0.3032 REMARK 3 9 3.0100 - 2.8900 0.88 1178 143 0.2885 0.2826 REMARK 3 10 2.8900 - 2.7900 0.86 1178 127 0.2817 0.3218 REMARK 3 11 2.7900 - 2.7100 0.86 1177 129 0.3059 0.3860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 30:148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.860 5.249 -40.893 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.3617 REMARK 3 T33: 0.2356 T12: -0.0961 REMARK 3 T13: -0.0410 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 0.8569 L22: 2.4681 REMARK 3 L33: 1.9357 L12: 0.5459 REMARK 3 L13: -0.4698 L23: -0.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: -0.0538 S13: -0.2520 REMARK 3 S21: 0.8436 S22: -0.2379 S23: -0.4077 REMARK 3 S31: 0.1507 S32: -0.0455 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 149:233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.680 22.114 -48.910 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.3721 REMARK 3 T33: 0.2345 T12: -0.0692 REMARK 3 T13: -0.0014 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.7821 L22: 1.6864 REMARK 3 L33: 0.9237 L12: 0.1119 REMARK 3 L13: 0.2018 L23: 0.1167 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: 0.0945 S13: 0.0746 REMARK 3 S21: 0.0762 S22: -0.2149 S23: -0.3419 REMARK 3 S31: -0.3669 S32: 0.1398 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 234:272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.152 13.978 -51.370 REMARK 3 T TENSOR REMARK 3 T11: -1.2847 T22: 0.6906 REMARK 3 T33: 0.6396 T12: -0.3829 REMARK 3 T13: 0.2192 T23: 0.2585 REMARK 3 L TENSOR REMARK 3 L11: 0.2895 L22: 0.1343 REMARK 3 L33: 0.2920 L12: 0.3130 REMARK 3 L13: 0.0117 L23: -0.2882 REMARK 3 S TENSOR REMARK 3 S11: 0.7991 S12: 0.3932 S13: -0.0712 REMARK 3 S21: 0.0127 S22: -0.9311 S23: -1.1514 REMARK 3 S31: -1.9998 S32: 0.4317 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 273:332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.413 1.310 -46.974 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.4970 REMARK 3 T33: 0.8877 T12: 0.0958 REMARK 3 T13: -0.2873 T23: 0.2492 REMARK 3 L TENSOR REMARK 3 L11: 0.0276 L22: 0.4296 REMARK 3 L33: 0.6120 L12: -0.3651 REMARK 3 L13: -0.6194 L23: -0.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.8043 S12: 0.8147 S13: -1.3897 REMARK 3 S21: 1.4487 S22: -0.2724 S23: -1.5454 REMARK 3 S31: 0.9339 S32: 0.5359 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 30:167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.809 29.602 -17.813 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.2122 REMARK 3 T33: 0.2341 T12: 0.0627 REMARK 3 T13: 0.0191 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.7487 L22: 2.7747 REMARK 3 L33: 1.7258 L12: -0.1785 REMARK 3 L13: -0.1413 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.1177 S13: -0.0012 REMARK 3 S21: -0.0544 S22: -0.0778 S23: -0.3191 REMARK 3 S31: -0.0325 S32: -0.0219 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 168:233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.503 44.557 -9.525 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.1719 REMARK 3 T33: 0.4196 T12: 0.0346 REMARK 3 T13: -0.1205 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 0.8073 L22: 0.6423 REMARK 3 L33: 0.2615 L12: -0.2514 REMARK 3 L13: -0.4622 L23: 0.3559 REMARK 3 S TENSOR REMARK 3 S11: -0.2646 S12: -0.5913 S13: 0.7312 REMARK 3 S21: 0.3732 S22: -0.0530 S23: 0.2331 REMARK 3 S31: -0.5942 S32: -1.4719 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 234:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.905 28.321 -10.686 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.3822 REMARK 3 T33: 0.3647 T12: -0.0152 REMARK 3 T13: 0.0044 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.2091 L22: 0.8629 REMARK 3 L33: 1.3567 L12: 0.6423 REMARK 3 L13: -0.7176 L23: 0.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: -0.1090 S13: 0.1090 REMARK 3 S21: 0.1791 S22: -0.1433 S23: 0.4078 REMARK 3 S31: -0.0201 S32: -0.3890 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 11:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.744 6.425 -60.923 REMARK 3 T TENSOR REMARK 3 T11: 0.7169 T22: 0.5925 REMARK 3 T33: 0.6870 T12: -0.0016 REMARK 3 T13: 0.0365 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0087 L22: -0.0024 REMARK 3 L33: -0.0013 L12: -0.0199 REMARK 3 L13: 0.0047 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.2204 S12: 0.3050 S13: -0.1967 REMARK 3 S21: -0.1937 S22: -0.0818 S23: -0.4232 REMARK 3 S31: -0.0390 S32: 0.3969 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN D AND RESID 11:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.626 28.383 1.682 REMARK 3 T TENSOR REMARK 3 T11: 0.7176 T22: 0.7789 REMARK 3 T33: 0.6557 T12: 0.0300 REMARK 3 T13: -0.1039 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.0132 L22: 0.0126 REMARK 3 L33: -0.0023 L12: 0.0128 REMARK 3 L13: -0.0014 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: -0.7066 S13: -0.2849 REMARK 3 S21: 0.4407 S22: 0.0632 S23: 0.3453 REMARK 3 S31: -0.0218 S32: -0.1423 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 30 OR (RESID 31 REMARK 3 THROUGH 32 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 33 REMARK 3 THROUGH 255 OR (RESID 256 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR RESID 257 REMARK 3 THROUGH 332)) REMARK 3 SELECTION : (CHAIN B AND (RESID 30 THROUGH 37 OR REMARK 3 (RESID 38 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 39 REMARK 3 THROUGH 77 OR (RESID 78 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 79 THROUGH 108 OR (RESID 109 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME CE ) REMARK 3 ) OR RESID 110 THROUGH 180 OR (RESID 181 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 182 THROUGH 210 REMARK 3 OR RESID 214 THROUGH 290 OR (RESID 291 REMARK 3 THROUGH 292 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 293 THROUGH 295 OR (RESID 296 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 297 OR (RESID 298 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD )) OR RESID 299 REMARK 3 THROUGH 330 OR (RESID 331 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 332)) REMARK 3 ATOM PAIRS NUMBER : 1788 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 54 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15751 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 15.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : 0.20900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM ACETATE, BIS-TRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.61400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 333 REMARK 465 CYS A 334 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 ASP B 211 REMARK 465 ASP B 212 REMARK 465 VAL C 12 REMARK 465 PRO C 13 REMARK 465 ILE C 14 REMARK 465 GLN C 15 REMARK 465 SER C 16 REMARK 465 NH2 C 17 REMARK 465 VAL D 12 REMARK 465 PRO D 13 REMARK 465 ILE D 14 REMARK 465 GLN D 15 REMARK 465 SER D 16 REMARK 465 NH2 D 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 87 CE NZ REMARK 470 LYS A 109 NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CE NZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 ILE A 210 CG1 CG2 CD1 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLN A 298 OE1 NE2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 VAL B 31 CG1 CG2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 87 CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 ILE B 210 CG1 CG2 CD1 REMARK 470 ASP B 213 CG OD1 OD2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 LYS B 239 CE NZ REMARK 470 LYS B 245 CD CE NZ REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LYS B 250 NZ REMARK 470 LYS B 256 CE NZ REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 LYS B 291 NZ REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 ASP D 10 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 168 79.01 -68.53 REMARK 500 LEU A 234 39.56 -78.25 REMARK 500 ASN A 257 95.89 -160.01 REMARK 500 LYS A 291 0.74 59.93 REMARK 500 ASN A 323 -25.05 76.87 REMARK 500 ASP A 324 -69.47 -120.49 REMARK 500 LEU B 234 38.24 -77.84 REMARK 500 ASN B 323 -20.49 77.10 REMARK 500 ASP B 324 -67.47 -122.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WJQ A 22 334 UNP P61964 WDR5_HUMAN 22 334 DBREF 6WJQ B 22 334 UNP P61964 WDR5_HUMAN 22 334 DBREF 6WJQ C 2 16 UNP O15530 PDPK1_HUMAN 2 16 DBREF 6WJQ D 2 16 UNP O15530 PDPK1_HUMAN 2 16 SEQADV 6WJQ ACE C 1 UNP O15530 ACETYLATION SEQADV 6WJQ NH2 C 17 UNP O15530 AMIDATION SEQADV 6WJQ ACE D 1 UNP O15530 ACETYLATION SEQADV 6WJQ NH2 D 17 UNP O15530 AMIDATION SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS SEQRES 1 B 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 B 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 B 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 B 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 B 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 B 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 B 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 B 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 B 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 B 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 B 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 B 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 B 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 B 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 B 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 B 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 B 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 B 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 B 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 B 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 B 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 B 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 B 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 B 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 B 313 CYS SEQRES 1 C 17 ACE ALA ARG THR THR SER GLN LEU TYR ASP ALA VAL PRO SEQRES 2 C 17 ILE GLN SER NH2 SEQRES 1 D 17 ACE ALA ARG THR THR SER GLN LEU TYR ASP ALA VAL PRO SEQRES 2 D 17 ILE GLN SER NH2 HET ACE C 1 3 HET ACE D 1 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 HOH *49(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N SER A 318 O LYS A 328 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LYS A 123 N ILE A 113 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 ILE A 229 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 LEU A 282 ASN A 287 -1 O TRP A 286 N ILE A 274 SHEET 4 AA7 4 ILE A 293 GLN A 298 -1 O LEU A 297 N VAL A 283 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N SER B 318 O LYS B 328 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 LEU B 68 GLY B 73 -1 O TRP B 72 N LEU B 60 SHEET 4 AA9 4 PHE B 79 SER B 84 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 THR B 110 ASP B 115 -1 O THR B 110 N SER B 106 SHEET 4 AB1 4 CYS B 121 LYS B 126 -1 O LYS B 123 N ILE B 113 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LYS B 165 N ILE B 155 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 206 N ILE B 197 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LEU B 249 N LEU B 240 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 AB5 4 LEU B 282 ASN B 287 -1 O TRP B 286 N ILE B 274 SHEET 4 AB5 4 ILE B 293 GLN B 298 -1 O VAL B 294 N ILE B 285 LINK C ACE C 1 N ALA C 2 1555 1555 1.33 LINK C ACE D 1 N ALA D 2 1555 1555 1.33 CRYST1 54.518 47.228 118.965 90.00 90.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018343 0.000000 0.000296 0.00000 SCALE2 0.000000 0.021174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008407 0.00000