data_6WJR # _entry.id 6WJR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6WJR pdb_00006wjr 10.2210/pdb6wjr/pdb WWPDB D_1000248458 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6WJR _pdbx_database_status.recvd_initial_deposition_date 2020-04-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilt, H.M.' 1 ? 'Wang, Y.-X.' 2 0000-0002-2175-0148 'Stagno, J.R.' 3 0000-0002-6464-7829 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Struct Biol X' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2590-1524 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 100035 _citation.page_last 100035 _citation.title 'FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.yjsbx.2020.100035 _citation.pdbx_database_id_PubMed 33103111 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilt, H.M.' 1 ? primary 'Yu, P.' 2 ? primary 'Tan, K.' 3 ? primary 'Wang, Y.X.' 4 ? primary 'Stagno, J.R.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6WJR _cell.details ? _cell.formula_units_Z ? _cell.length_a 73.635 _cell.length_a_esd ? _cell.length_b 36.468 _cell.length_b_esd ? _cell.length_c 205.524 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (112-MER)' 36229.492 1 ? ? ? ? 2 non-polymer nat 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer nat 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAA ACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAA ACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 U n 1 53 A n 1 54 U n 1 55 U n 1 56 U n 1 57 G n 1 58 C n 1 59 U n 1 60 U n 1 61 U n 1 62 G n 1 63 A n 1 64 U n 1 65 U n 1 66 U n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 A n 1 74 U n 1 75 U n 1 76 C n 1 77 C n 1 78 A n 1 79 A n 1 80 A n 1 81 A n 1 82 C n 1 83 C n 1 84 G n 1 85 A n 1 86 C n 1 87 A n 1 88 G n 1 89 U n 1 90 A n 1 91 G n 1 92 A n 1 93 G n 1 94 U n 1 95 C n 1 96 U n 1 97 G n 1 98 G n 1 99 A n 1 100 U n 1 101 G n 1 102 A n 1 103 G n 1 104 A n 1 105 G n 1 106 A n 1 107 A n 1 108 G n 1 109 A n 1 110 U n 1 111 U n 1 112 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 112 _pdbx_entity_src_syn.organism_scientific 'Fusobacterium nucleatum' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 851 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP012717.1 _struct_ref.pdbx_db_accession 929732263 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAAAC CGACAGUAGAGUCUGGAUGAGAGAAGA ; _struct_ref.pdbx_align_begin 1175397 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6WJR _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 929732263 _struct_ref_seq.db_align_beg 1175397 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1175503 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6WJR G X 1 ? GB 929732263 ? ? 'cloning artifact' 1 1 1 6WJR G X 2 ? GB 929732263 ? ? 'cloning artifact' 2 2 1 6WJR U X 110 ? GB 929732263 ? ? 'cloning artifact' 110 3 1 6WJR U X 111 ? GB 929732263 ? ? 'cloning artifact' 111 4 1 6WJR C X 112 ? GB 929732263 ? ? 'cloning artifact' 112 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6WJR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.81 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, pH 4.6, 0.2 M ammonium sulfate, and 26 % PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-07-02 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033175 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033175 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 104.085 _reflns.entry_id 6WJR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 42.140 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15928 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.046 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.160 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.834 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.104 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 64444 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.700 2.770 ? 0.330 ? 5015 1173 ? 1168 99.600 ? ? ? ? 4.793 ? ? ? ? ? ? ? ? 4.294 ? ? ? ? 5.447 ? ? 1 1 0.138 ? ? 2.770 2.850 ? 0.510 ? 4825 1132 ? 1127 99.600 ? ? ? ? 3.027 ? ? ? ? ? ? ? ? 4.281 ? ? ? ? 3.442 ? ? 2 1 0.230 ? ? 2.850 2.930 ? 0.700 ? 4508 1086 ? 1085 99.900 ? ? ? ? 2.336 ? ? ? ? ? ? ? ? 4.155 ? ? ? ? 2.672 ? ? 3 1 0.250 ? ? 2.930 3.020 ? 1.100 ? 4239 1084 ? 1078 99.400 ? ? ? ? 1.409 ? ? ? ? ? ? ? ? 3.932 ? ? ? ? 1.617 ? ? 4 1 0.487 ? ? 3.020 3.120 ? 1.900 ? 4272 1027 ? 1026 99.900 ? ? ? ? 0.816 ? ? ? ? ? ? ? ? 4.164 ? ? ? ? 0.933 ? ? 5 1 0.793 ? ? 3.120 3.230 ? 3.330 ? 4281 1002 ? 1000 99.800 ? ? ? ? 0.439 ? ? ? ? ? ? ? ? 4.281 ? ? ? ? 0.500 ? ? 6 1 0.940 ? ? 3.230 3.350 ? 4.750 ? 4297 1001 ? 997 99.600 ? ? ? ? 0.284 ? ? ? ? ? ? ? ? 4.310 ? ? ? ? 0.323 ? ? 7 1 0.977 ? ? 3.350 3.490 ? 5.490 ? 3937 913 ? 911 99.800 ? ? ? ? 0.263 ? ? ? ? ? ? ? ? 4.322 ? ? ? ? 0.300 ? ? 8 1 0.978 ? ? 3.490 3.640 ? 6.600 ? 3769 924 ? 915 99.000 ? ? ? ? 0.194 ? ? ? ? ? ? ? ? 4.119 ? ? ? ? 0.223 ? ? 9 1 0.980 ? ? 3.640 3.820 ? 9.000 ? 3570 849 ? 847 99.800 ? ? ? ? 0.143 ? ? ? ? ? ? ? ? 4.215 ? ? ? ? 0.164 ? ? 10 1 0.988 ? ? 3.820 4.020 ? 10.540 ? 3197 837 ? 827 98.800 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 3.866 ? ? ? ? 0.139 ? ? 11 1 0.987 ? ? 4.020 4.270 ? 12.810 ? 2883 774 ? 765 98.800 ? ? ? ? 0.099 ? ? ? ? ? ? ? ? 3.769 ? ? ? ? 0.117 ? ? 12 1 0.984 ? ? 4.270 4.560 ? 14.580 ? 2777 778 ? 768 98.700 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 3.616 ? ? ? ? 0.098 ? ? 13 1 0.990 ? ? 4.560 4.930 ? 17.790 ? 2668 673 ? 666 99.000 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 4.006 ? ? ? ? 0.081 ? ? 14 1 0.992 ? ? 4.930 5.400 ? 19.420 ? 2520 646 ? 629 97.400 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 4.006 ? ? ? ? 0.076 ? ? 15 1 0.993 ? ? 5.400 6.040 ? 20.370 ? 2282 595 ? 582 97.800 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 3.921 ? ? ? ? 0.072 ? ? 16 1 0.993 ? ? 6.040 6.970 ? 20.740 ? 1971 529 ? 518 97.900 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 3.805 ? ? ? ? 0.064 ? ? 17 1 0.994 ? ? 6.970 8.540 ? 20.930 ? 1485 455 ? 440 96.700 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 3.375 ? ? ? ? 0.059 ? ? 18 1 0.991 ? ? 8.540 12.070 ? 22.320 ? 1284 381 ? 370 97.100 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 3.470 ? ? ? ? 0.052 ? ? 19 1 0.995 ? ? 12.070 42.140 ? 21.580 ? 664 233 ? 209 89.700 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 3.177 ? ? ? ? 0.051 ? ? 20 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 261.260 _refine.B_iso_mean 118.0549 _refine.B_iso_min 66.800 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6WJR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 42.1400 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15580 _refine.ls_number_reflns_R_free 727 _refine.ls_number_reflns_R_work 14853 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.1900 _refine.ls_percent_reflns_R_free 4.6700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2222 _refine.ls_R_factor_R_free 0.2576 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2206 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3F2Q _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.1900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 42.1400 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2390 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 111 _refine_hist.pdbx_B_iso_mean_ligand 90.13 _refine_hist.pdbx_B_iso_mean_solvent 76.52 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2382 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2671 'X-RAY DIFFRACTION' ? f_angle_d 1.385 ? ? 4165 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.658 ? ? 1329 'X-RAY DIFFRACTION' ? f_chiral_restr 0.096 ? ? 555 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 111 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7000 2.8000 1309 . 60 1249 82.0000 . . . 0.5857 0.0000 0.4732 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.8000 2.9100 1544 . 73 1471 100.0000 . . . 0.4808 0.0000 0.4646 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.9100 3.0400 1590 . 90 1500 99.0000 . . . 0.3635 0.0000 0.3802 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.0400 3.2000 1547 . 68 1479 100.0000 . . . 0.2450 0.0000 0.2759 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.2000 3.4000 1550 . 59 1491 99.0000 . . . 0.2559 0.0000 0.2627 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4000 3.6600 1585 . 83 1502 99.0000 . . . 0.2527 0.0000 0.2279 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.6600 4.0300 1572 . 75 1497 99.0000 . . . 0.3014 0.0000 0.2204 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.0300 4.6200 1588 . 79 1509 99.0000 . . . 0.1723 0.0000 0.1926 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.6200 5.8100 1607 . 77 1530 99.0000 . . . 0.1989 0.0000 0.1820 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.8100 42.1400 1688 . 63 1625 96.0000 . . . 0.3002 0.0000 0.2035 . . . . . . . 10 . . . # _struct.entry_id 6WJR _struct.title 'Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6WJR _struct_keywords.text 'riboswitch, RNA conformation, apo, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 89 O4 ? ? ? 1_555 C MG . MG ? ? X U 89 X MG 202 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc2 metalc ? ? A A 92 OP2 ? ? ? 1_555 C MG . MG ? ? X A 92 X MG 202 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? X MG 202 X HOH 301 1_555 ? ? ? ? ? ? ? 1.959 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 111 O2 ? ? X G 2 X U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 111 N3 ? ? X G 2 X U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 110 N3 ? ? X A 3 X U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 110 O4 ? ? X A 3 X U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 109 N1 ? ? X U 4 X A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 109 N6 ? ? X U 4 X A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 108 N1 ? ? X C 5 X G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 108 O6 ? ? X C 5 X G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 108 N2 ? ? X C 5 X G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 107 N1 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 107 N6 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 106 N1 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 106 N6 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 105 N1 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 105 O6 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 105 N2 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 104 N7 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 N3 ? ? ? 1_555 A A 104 N6 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 32 N3 ? ? X G 11 X G 32 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 93 N3 ? ? X G 12 X G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog23 hydrog ? ? A G 12 N3 ? ? ? 1_555 A G 93 N2 ? ? X G 12 X G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog25 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog37 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 90 N7 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A G 19 N3 ? ? ? 1_555 A A 90 N6 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog40 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 94 N3 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 94 O4 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 93 N1 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 93 O6 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 93 N2 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 84 N1 ? ? X C 31 X G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 84 O6 ? ? X C 31 X G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 84 N2 ? ? X C 31 X G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 83 N3 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 83 N4 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 N2 ? ? ? 1_555 A A 104 N3 ? ? X G 33 X A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog64 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog65 hydrog ? ? A A 38 N6 ? ? ? 1_555 A G 70 N3 ? ? X A 38 X G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog66 hydrog ? ? A A 38 N7 ? ? ? 1_555 A G 70 N2 ? ? X A 38 X G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog67 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 63 N3 ? ? X G 41 X A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog68 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 82 N3 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 82 O2 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 82 N4 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 81 N1 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 81 N6 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 48 N6 ? ? ? 1_555 A U 61 O2 ? ? X A 48 X U 61 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog74 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 60 N3 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 60 O4 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 58 N3 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 58 O2 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 58 N4 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 52 O4 ? ? ? 1_555 A G 57 N1 ? ? X U 52 X G 57 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog82 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 62 X C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog83 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 80 N1 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 80 N6 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 65 N3 ? ? ? 1_555 A A 79 N1 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 65 O4 ? ? ? 1_555 A A 79 N6 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 66 N3 ? ? ? 1_555 A A 78 N1 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A U 66 O4 ? ? ? 1_555 A A 78 N6 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 77 N3 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 77 O2 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 77 N4 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 76 N3 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 76 O2 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 76 N4 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A U 69 N3 ? ? ? 1_555 A A 73 N7 ? ? X U 69 X A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog96 hydrog ? ? A U 69 O2 ? ? ? 1_555 A A 73 N6 ? ? X U 69 X A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog97 hydrog ? ? A A 85 N1 ? ? ? 1_555 A G 98 N1 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog98 hydrog ? ? A A 85 N6 ? ? ? 1_555 A G 98 O6 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog99 hydrog ? ? A C 86 N3 ? ? ? 1_555 A G 97 N1 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 86 N4 ? ? ? 1_555 A G 97 O6 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 86 O2 ? ? ? 1_555 A G 97 N2 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A A 87 N1 ? ? ? 1_555 A U 96 N3 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A A 87 N6 ? ? ? 1_555 A U 96 O4 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 88 N1 ? ? ? 1_555 A C 95 N3 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 88 N2 ? ? ? 1_555 A C 95 O2 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 88 O6 ? ? ? 1_555 A C 95 N4 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A U 89 N3 ? ? ? 1_555 A A 92 N7 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog108 hydrog ? ? A U 89 O2 ? ? ? 1_555 A A 92 N6 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X SO4 201 ? 5 'binding site for residue SO4 X 201' AC2 Software X MG 202 ? 4 'binding site for residue MG X 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 5 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 5 G A 32 ? G X 32 . ? 1_555 ? 4 AC1 5 G A 62 ? G X 62 . ? 1_555 ? 5 AC1 5 G A 84 ? G X 84 . ? 1_555 ? 6 AC2 4 G A 88 ? G X 88 . ? 1_555 ? 7 AC2 4 U A 89 ? U X 89 . ? 1_555 ? 8 AC2 4 A A 92 ? A X 92 . ? 1_555 ? 9 AC2 4 HOH D . ? HOH X 301 . ? 1_555 ? # _atom_sites.entry_id 6WJR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013580 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027421 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004866 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 U 52 52 52 U U X . n A 1 53 A 53 53 53 A A X . n A 1 54 U 54 54 54 U U X . n A 1 55 U 55 55 55 U U X . n A 1 56 U 56 56 56 U U X . n A 1 57 G 57 57 57 G G X . n A 1 58 C 58 58 58 C C X . n A 1 59 U 59 59 59 U U X . n A 1 60 U 60 60 60 U U X . n A 1 61 U 61 61 61 U U X . n A 1 62 G 62 62 62 G G X . n A 1 63 A 63 63 63 A A X . n A 1 64 U 64 64 64 U U X . n A 1 65 U 65 65 65 U U X . n A 1 66 U 66 66 66 U U X . n A 1 67 G 67 67 67 G G X . n A 1 68 G 68 68 68 G G X . n A 1 69 U 69 69 69 U U X . n A 1 70 G 70 70 70 G G X . n A 1 71 A 71 71 71 A A X . n A 1 72 A 72 72 72 A A X . n A 1 73 A 73 73 73 A A X . n A 1 74 U 74 74 74 U U X . n A 1 75 U 75 75 75 U U X . n A 1 76 C 76 76 76 C C X . n A 1 77 C 77 77 77 C C X . n A 1 78 A 78 78 78 A A X . n A 1 79 A 79 79 79 A A X . n A 1 80 A 80 80 80 A A X . n A 1 81 A 81 81 81 A A X . n A 1 82 C 82 82 82 C C X . n A 1 83 C 83 83 83 C C X . n A 1 84 G 84 84 84 G G X . n A 1 85 A 85 85 85 A A X . n A 1 86 C 86 86 86 C C X . n A 1 87 A 87 87 87 A A X . n A 1 88 G 88 88 88 G G X . n A 1 89 U 89 89 89 U U X . n A 1 90 A 90 90 90 A A X . n A 1 91 G 91 91 91 G G X . n A 1 92 A 92 92 92 A A X . n A 1 93 G 93 93 93 G G X . n A 1 94 U 94 94 94 U U X . n A 1 95 C 95 95 95 C C X . n A 1 96 U 96 96 96 U U X . n A 1 97 G 97 97 97 G G X . n A 1 98 G 98 98 98 G G X . n A 1 99 A 99 99 99 A A X . n A 1 100 U 100 100 100 U U X . n A 1 101 G 101 101 101 G G X . n A 1 102 A 102 102 102 A A X . n A 1 103 G 103 103 103 G G X . n A 1 104 A 104 104 104 A A X . n A 1 105 G 105 105 105 G G X . n A 1 106 A 106 106 106 A A X . n A 1 107 A 107 107 107 A A X . n A 1 108 G 108 108 108 G G X . n A 1 109 A 109 109 109 A A X . n A 1 110 U 110 110 110 U U X . n A 1 111 U 111 111 111 U U X . n A 1 112 C 112 112 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 X . C 3 MG 1 202 1 MG MG X . D 4 HOH 1 301 2 HOH HOH X . D 4 HOH 2 302 1 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 89 ? X U 89 ? 1_555 MG ? C MG . ? X MG 202 ? 1_555 OP2 ? A A 92 ? X A 92 ? 1_555 76.8 ? 2 O4 ? A U 89 ? X U 89 ? 1_555 MG ? C MG . ? X MG 202 ? 1_555 O ? D HOH . ? X HOH 301 ? 1_555 85.5 ? 3 OP2 ? A A 92 ? X A 92 ? 1_555 MG ? C MG . ? X MG 202 ? 1_555 O ? D HOH . ? X HOH 301 ? 1_555 76.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-02 2 'Structure model' 1 1 2020-09-23 3 'Structure model' 1 2 2020-11-11 4 'Structure model' 1 3 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_citation.page_first' 3 3 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.pdbx_database_id_PubMed' 5 3 'Structure model' '_citation.title' 6 3 'Structure model' '_citation_author.name' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.140 _pdbx_refine_tls.origin_y -14.882 _pdbx_refine_tls.origin_z -30.679 _pdbx_refine_tls.T[1][1] 1.0823 _pdbx_refine_tls.T[2][2] 0.9913 _pdbx_refine_tls.T[3][3] 0.9917 _pdbx_refine_tls.T[1][2] 0.0257 _pdbx_refine_tls.T[1][3] 0.1485 _pdbx_refine_tls.T[2][3] 0.1038 _pdbx_refine_tls.L[1][1] 2.9108 _pdbx_refine_tls.L[2][2] 2.8371 _pdbx_refine_tls.L[3][3] 2.0720 _pdbx_refine_tls.L[1][2] 0.9563 _pdbx_refine_tls.L[1][3] -0.6492 _pdbx_refine_tls.L[2][3] -0.2562 _pdbx_refine_tls.S[1][1] 0.2585 _pdbx_refine_tls.S[2][2] -0.0100 _pdbx_refine_tls.S[3][3] 0.0001 _pdbx_refine_tls.S[1][2] -0.8568 _pdbx_refine_tls.S[1][3] 0.4733 _pdbx_refine_tls.S[2][3] 0.5371 _pdbx_refine_tls.S[2][1] 0.7003 _pdbx_refine_tls.S[3][1] -0.3282 _pdbx_refine_tls.S[3][2] -0.0992 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id X _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id X _pdbx_refine_tls_group.end_auth_seq_id 111 _pdbx_refine_tls_group.selection_details '( CHAIN X AND RESID 1:111 )' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18rc5_3822 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6WJR _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 X _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 X _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.481 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.126 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C5 _pdbx_validate_rmsd_angle.auth_asym_id_1 X _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 52 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C6 _pdbx_validate_rmsd_angle.auth_asym_id_2 X _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 52 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 X _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 52 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 119.21 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -3.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id C _pdbx_unobs_or_zero_occ_residues.auth_seq_id 112 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id C _pdbx_unobs_or_zero_occ_residues.label_seq_id 112 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 SO4 S S N N 115 SO4 O1 O N N 116 SO4 O2 O N N 117 SO4 O3 O N N 118 SO4 O4 O N N 119 U OP3 O N N 120 U P P N N 121 U OP1 O N N 122 U OP2 O N N 123 U "O5'" O N N 124 U "C5'" C N N 125 U "C4'" C N R 126 U "O4'" O N N 127 U "C3'" C N S 128 U "O3'" O N N 129 U "C2'" C N R 130 U "O2'" O N N 131 U "C1'" C N R 132 U N1 N N N 133 U C2 C N N 134 U O2 O N N 135 U N3 N N N 136 U C4 C N N 137 U O4 O N N 138 U C5 C N N 139 U C6 C N N 140 U HOP3 H N N 141 U HOP2 H N N 142 U "H5'" H N N 143 U "H5''" H N N 144 U "H4'" H N N 145 U "H3'" H N N 146 U "HO3'" H N N 147 U "H2'" H N N 148 U "HO2'" H N N 149 U "H1'" H N N 150 U H3 H N N 151 U H5 H N N 152 U H6 H N N 153 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SO4 S O1 doub N N 118 SO4 S O2 doub N N 119 SO4 S O3 sing N N 120 SO4 S O4 sing N N 121 U OP3 P sing N N 122 U OP3 HOP3 sing N N 123 U P OP1 doub N N 124 U P OP2 sing N N 125 U P "O5'" sing N N 126 U OP2 HOP2 sing N N 127 U "O5'" "C5'" sing N N 128 U "C5'" "C4'" sing N N 129 U "C5'" "H5'" sing N N 130 U "C5'" "H5''" sing N N 131 U "C4'" "O4'" sing N N 132 U "C4'" "C3'" sing N N 133 U "C4'" "H4'" sing N N 134 U "O4'" "C1'" sing N N 135 U "C3'" "O3'" sing N N 136 U "C3'" "C2'" sing N N 137 U "C3'" "H3'" sing N N 138 U "O3'" "HO3'" sing N N 139 U "C2'" "O2'" sing N N 140 U "C2'" "C1'" sing N N 141 U "C2'" "H2'" sing N N 142 U "O2'" "HO2'" sing N N 143 U "C1'" N1 sing N N 144 U "C1'" "H1'" sing N N 145 U N1 C2 sing N N 146 U N1 C6 sing N N 147 U C2 O2 doub N N 148 U C2 N3 sing N N 149 U N3 C4 sing N N 150 U N3 H3 sing N N 151 U C4 O4 doub N N 152 U C4 C5 sing N N 153 U C5 C6 doub N N 154 U C5 H5 sing N N 155 U C6 H6 sing N N 156 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6WJR 'double helix' 6WJR 'a-form double helix' 6WJR 'hairpin loop' 6WJR 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 111 1_555 -1.709 -0.631 -1.240 -21.349 5.700 -18.252 1 X_G2:U111_X X 2 ? X 111 ? 28 1 1 A A 3 1_555 A U 110 1_555 -0.092 -0.143 -0.321 -7.110 5.464 -3.456 2 X_A3:U110_X X 3 ? X 110 ? 20 1 1 A U 4 1_555 A A 109 1_555 -0.183 0.001 0.346 -0.538 -3.886 -2.962 3 X_U4:A109_X X 4 ? X 109 ? 20 1 1 A C 5 1_555 A G 108 1_555 0.052 -0.145 0.476 -2.947 -10.166 -5.338 4 X_C5:G108_X X 5 ? X 108 ? 19 1 1 A U 6 1_555 A A 107 1_555 -0.241 -0.135 0.435 -9.116 -9.061 6.526 5 X_U6:A107_X X 6 ? X 107 ? 20 1 1 A U 7 1_555 A A 106 1_555 -0.025 -0.128 0.552 -2.675 -6.450 2.868 6 X_U7:A106_X X 7 ? X 106 ? 20 1 1 A C 8 1_555 A G 105 1_555 0.141 -0.236 0.409 -2.505 -7.103 -1.390 7 X_C8:G105_X X 8 ? X 105 ? 19 1 1 A G 9 1_555 A A 104 1_555 6.529 -3.927 0.839 -30.939 -51.063 -20.510 8 X_G9:A104_X X 9 ? X 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -5.427 -1.450 0.412 38.795 -21.781 62.860 9 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.188 -0.234 0.262 2.917 -14.829 2.156 10 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.145 -0.200 0.199 -1.652 -14.952 -1.221 11 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 -0.074 -0.261 0.331 -1.666 -11.182 -2.075 12 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.098 -0.189 0.196 -4.692 -9.882 1.017 13 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.561 -2.959 -0.182 9.792 3.222 -88.401 14 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 A G 70 1_555 -6.591 -3.776 0.916 -7.728 9.086 6.611 15 X_A38:G70_X X 38 ? X 70 ? 11 9 1 A A 73 1_555 A U 69 1_555 -4.001 -1.731 0.808 -11.378 11.631 -86.489 16 X_A73:U69_X X 73 ? X 69 ? 24 4 1 A C 76 1_555 A G 68 1_555 0.096 -0.042 0.190 3.738 -1.034 1.962 17 X_C76:G68_X X 76 ? X 68 ? 19 1 1 A C 77 1_555 A G 67 1_555 0.179 -0.216 0.465 -2.903 -3.409 -0.209 18 X_C77:G67_X X 77 ? X 67 ? 19 1 1 A A 78 1_555 A U 66 1_555 0.000 -0.033 0.282 -4.935 -4.060 1.617 19 X_A78:U66_X X 78 ? X 66 ? 20 1 1 A A 79 1_555 A U 65 1_555 0.159 -0.180 0.503 2.559 -5.089 2.532 20 X_A79:U65_X X 79 ? X 65 ? 20 1 1 A A 80 1_555 A U 64 1_555 -0.118 -0.263 0.076 0.827 -3.331 10.186 21 X_A80:U64_X X 80 ? X 64 ? 20 1 1 A A 81 1_555 A U 42 1_555 0.133 0.004 -0.185 -2.087 -2.727 -1.682 22 X_A81:U42_X X 81 ? X 42 ? 20 1 1 A C 82 1_555 A G 41 1_555 0.267 -0.153 0.469 -4.180 -15.957 1.120 23 X_C82:G41_X X 82 ? X 41 ? 19 1 1 A C 83 1_555 A G 32 1_555 0.088 -0.162 0.886 -14.553 -4.739 -3.269 24 X_C83:G32_X X 83 ? X 32 ? 19 1 1 A G 84 1_555 A C 31 1_555 -0.161 -0.163 0.389 10.059 -3.871 -3.027 25 X_G84:C31_X X 84 ? X 31 ? 19 1 1 A G 93 1_555 A C 30 1_555 -0.244 -0.198 0.336 5.551 -7.871 0.289 26 X_G93:C30_X X 93 ? X 30 ? 19 1 1 A U 94 1_555 A A 29 1_555 -0.029 -0.085 0.052 6.955 -8.257 -1.770 27 X_U94:A29_X X 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.860 1.376 0.317 -6.472 -15.381 57.720 28 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 -0.259 0.183 -0.207 1.107 -5.293 12.267 29 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.196 -0.193 -0.305 -1.593 -9.010 2.182 30 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 -0.056 -0.111 -0.242 -12.461 -1.797 -3.030 31 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.207 -2.118 0.299 6.289 8.501 -90.637 32 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 A A 90 1_555 6.655 -4.135 0.774 20.340 11.420 4.588 33 X_G19:A90_X X 19 ? X 90 ? 11 9 1 A A 48 1_555 A U 61 1_555 -5.059 -0.899 -0.495 4.676 -12.449 -2.423 34 X_A48:U61_X X 48 ? X 61 ? ? ? 1 A A 49 1_555 A U 60 1_555 0.014 -0.092 0.318 2.205 -9.717 2.484 35 X_A49:U60_X X 49 ? X 60 ? 20 1 1 A A 50 1_555 A U 59 1_555 0.372 -0.139 0.266 -0.030 -7.275 0.300 36 X_A50:U59_X X 50 ? X 59 ? 20 1 1 A G 51 1_555 A C 58 1_555 -0.253 -0.299 -0.039 5.074 -12.582 1.799 37 X_G51:C58_X X 51 ? X 58 ? 19 1 1 A U 52 1_555 A G 57 1_555 -4.484 1.431 -0.208 22.190 6.371 -116.730 38 X_U52:G57_X X 52 ? X 57 ? ? 4 1 A A 85 1_555 A G 98 1_555 -0.765 1.562 -0.090 -1.792 -11.159 -7.737 39 X_A85:G98_X X 85 ? X 98 ? 8 1 1 A C 86 1_555 A G 97 1_555 0.238 -0.216 0.191 4.311 -16.287 -0.049 40 X_C86:G97_X X 86 ? X 97 ? 19 1 1 A A 87 1_555 A U 96 1_555 0.132 -0.025 -0.018 -5.586 -21.475 1.884 41 X_A87:U96_X X 87 ? X 96 ? 20 1 1 A G 88 1_555 A C 95 1_555 -0.192 -0.112 0.443 -15.905 -20.980 -0.585 42 X_G88:C95_X X 88 ? X 95 ? 19 1 1 A U 89 1_555 A A 92 1_555 4.563 -2.691 0.524 2.368 15.049 -90.407 43 X_U89:A92_X X 89 ? X 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 111 1_555 A A 3 1_555 A U 110 1_555 -0.951 -0.436 3.173 -11.652 7.237 35.775 -1.582 -0.023 3.176 11.283 18.166 38.234 1 XX_G2A3:U110U111_XX X 2 ? X 111 ? X 3 ? X 110 ? 1 A A 3 1_555 A U 110 1_555 A U 4 1_555 A A 109 1_555 0.321 -1.442 3.077 -4.484 7.498 32.568 -3.570 -1.202 2.623 13.079 7.822 33.689 2 XX_A3U4:A109U110_XX X 3 ? X 110 ? X 4 ? X 109 ? 1 A U 4 1_555 A A 109 1_555 A C 5 1_555 A G 108 1_555 0.008 -2.616 2.929 1.577 7.770 34.562 -5.222 0.175 2.304 12.869 -2.612 35.433 3 XX_U4C5:G108A109_XX X 4 ? X 109 ? X 5 ? X 108 ? 1 A C 5 1_555 A G 108 1_555 A U 6 1_555 A A 107 1_555 -0.129 -1.498 3.226 -0.886 4.327 33.307 -3.272 0.085 3.016 7.509 1.537 33.590 4 XX_C5U6:A107G108_XX X 5 ? X 108 ? X 6 ? X 107 ? 1 A U 6 1_555 A A 107 1_555 A U 7 1_555 A A 106 1_555 -0.451 -1.422 2.997 -4.571 4.183 29.373 -3.518 0.027 2.809 8.136 8.891 30.006 5 XX_U6U7:A106A107_XX X 6 ? X 107 ? X 7 ? X 106 ? 1 A U 7 1_555 A A 106 1_555 A C 8 1_555 A G 105 1_555 0.262 -2.058 3.187 -0.388 -2.210 34.105 -3.155 -0.506 3.307 -3.763 0.660 34.176 6 XX_U7C8:G105A106_XX X 7 ? X 106 ? X 8 ? X 105 ? 1 A C 8 1_555 A G 105 1_555 A G 9 1_555 A A 104 1_555 -3.133 -1.313 3.942 6.907 25.464 51.108 -2.883 3.687 2.659 27.525 -7.466 57.107 7 XX_C8G9:A104G105_XX X 8 ? X 105 ? X 9 ? X 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 -0.684 -3.757 -3.181 127.182 -92.931 8.990 -2.408 -0.326 1.405 -52.571 -71.947 157.586 8 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -1.702 -2.305 3.167 -5.607 1.131 28.052 -4.921 2.167 3.343 2.304 11.416 28.618 9 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.440 -1.522 3.027 -5.178 10.288 33.969 -3.763 0.067 2.513 17.014 8.564 35.814 10 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.661 -1.849 3.196 2.974 4.910 35.517 -3.657 -0.669 2.967 7.984 -4.836 35.964 11 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.895 -1.552 3.019 4.841 0.748 85.737 -1.155 0.757 2.964 0.549 -3.555 85.850 12 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 A G 70 1_555 A A 73 1_555 A U 69 1_555 -0.920 -0.482 3.316 -8.523 6.614 0.986 -14.552 -10.584 0.732 51.984 66.987 10.833 13 XX_A38A73:U69G70_XX X 38 ? X 70 ? X 73 ? X 69 ? 1 A A 73 1_555 A U 69 1_555 A C 76 1_555 A G 68 1_555 2.381 -1.849 3.274 -0.064 -2.190 70.601 -1.522 -2.061 3.320 -1.895 0.055 70.630 14 XX_A73C76:G68U69_XX X 73 ? X 69 ? X 76 ? X 68 ? 1 A C 76 1_555 A G 68 1_555 A C 77 1_555 A G 67 1_555 -0.371 -2.231 3.205 -3.519 7.465 40.759 -3.879 0.178 2.792 10.587 4.990 41.551 15 XX_C76C77:G67G68_XX X 76 ? X 68 ? X 77 ? X 67 ? 1 A C 77 1_555 A G 67 1_555 A A 78 1_555 A U 66 1_555 -0.220 -1.844 2.911 0.964 11.534 31.487 -4.707 0.507 2.116 20.410 -1.706 33.496 16 XX_C77A78:U66G67_XX X 77 ? X 67 ? X 78 ? X 66 ? 1 A A 78 1_555 A U 66 1_555 A A 79 1_555 A U 65 1_555 0.448 -1.274 2.992 0.948 7.051 34.206 -3.061 -0.620 2.695 11.829 -1.590 34.916 17 XX_A78A79:U65U66_XX X 78 ? X 66 ? X 79 ? X 65 ? 1 A A 79 1_555 A U 65 1_555 A A 80 1_555 A U 64 1_555 0.585 -1.077 3.269 5.945 -0.980 29.701 -1.859 0.108 3.353 -1.887 -11.450 30.293 18 XX_A79A80:U64U65_XX X 79 ? X 65 ? X 80 ? X 64 ? 1 A A 80 1_555 A U 64 1_555 A A 81 1_555 A U 42 1_555 0.154 -3.323 3.308 3.545 1.430 24.270 -8.244 0.715 3.101 3.374 -8.365 24.565 19 XX_A80A81:U42U64_XX X 80 ? X 64 ? X 81 ? X 42 ? 1 A A 81 1_555 A U 42 1_555 A C 82 1_555 A G 41 1_555 1.196 -1.296 3.134 -1.342 6.851 37.242 -2.804 -2.001 2.817 10.613 2.079 37.868 20 XX_A81C82:G41U42_XX X 81 ? X 42 ? X 82 ? X 41 ? 1 A C 82 1_555 A G 41 1_555 A C 83 1_555 A G 32 1_555 -0.855 -2.037 3.229 -0.943 8.060 33.834 -4.542 1.298 2.709 13.607 1.591 34.766 21 XX_C82C83:G32G41_XX X 82 ? X 41 ? X 83 ? X 32 ? 1 A C 83 1_555 A G 32 1_555 A G 84 1_555 A C 31 1_555 -0.232 -0.245 2.630 0.869 12.856 28.645 -2.367 0.558 2.303 24.480 -1.655 31.354 22 XX_C83G84:C31G32_XX X 83 ? X 32 ? X 84 ? X 31 ? 1 A G 84 1_555 A C 31 1_555 A G 93 1_555 A C 30 1_555 0.769 -1.761 3.344 -3.296 3.954 28.688 -4.340 -2.230 2.975 7.899 6.586 29.137 23 XX_G84G93:C30C31_XX X 84 ? X 31 ? X 93 ? X 30 ? 1 A G 93 1_555 A C 30 1_555 A U 94 1_555 A A 29 1_555 -1.066 -1.539 3.085 -0.833 -1.737 39.571 -2.077 1.480 3.168 -2.564 1.230 39.616 24 XX_G93U94:A29C30_XX X 93 ? X 30 ? X 94 ? X 29 ? 1 A U 94 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.000 -1.600 3.504 3.191 1.329 49.578 -2.009 -0.938 3.517 1.583 -3.800 49.691 25 XX_U94C13:G28A29_XX X 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -5.913 0.839 3.037 -2.129 8.302 36.456 0.208 8.936 3.466 13.049 3.346 37.416 26 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 -0.093 -2.216 3.337 0.990 5.119 25.214 -6.343 0.474 2.833 11.570 -2.236 25.739 27 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.131 -2.256 3.406 3.238 7.780 36.518 -4.506 0.616 2.861 12.216 -5.084 37.445 28 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.415 -1.805 3.076 3.197 2.385 73.848 -1.570 2.101 2.933 1.984 -2.659 73.941 29 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 A A 90 1_555 1.445 -0.343 3.042 2.895 4.095 -4.573 -11.359 22.284 1.641 -38.918 27.511 -6.786 30 XX_U18G19:A90A22_XX X 18 ? X 22 ? X 19 ? X 90 ? 1 A A 48 1_555 A U 61 1_555 A A 49 1_555 A U 60 1_555 0.389 -1.160 3.543 -9.767 9.346 48.788 -2.053 -1.180 3.157 11.070 11.568 50.515 31 XX_A48A49:U60U61_XX X 48 ? X 61 ? X 49 ? X 60 ? 1 A A 49 1_555 A U 60 1_555 A A 50 1_555 A U 59 1_555 -0.575 -1.215 3.205 -0.395 4.504 34.612 -2.680 0.902 3.034 7.531 0.661 34.897 32 XX_A49A50:U59U60_XX X 49 ? X 60 ? X 50 ? X 59 ? 1 A A 50 1_555 A U 59 1_555 A G 51 1_555 A C 58 1_555 0.302 -1.208 3.092 5.594 8.126 29.968 -3.598 0.391 2.692 15.205 -10.467 31.515 33 XX_A50G51:C58U59_XX X 50 ? X 59 ? X 51 ? X 58 ? 1 A G 51 1_555 A C 58 1_555 A U 52 1_555 A G 57 1_555 -2.079 0.370 3.283 3.574 2.816 -19.836 -2.382 -4.193 3.512 -8.039 10.201 -20.346 34 XX_G51U52:G57C58_XX X 51 ? X 58 ? X 52 ? X 57 ? 1 A A 85 1_555 A G 98 1_555 A C 86 1_555 A G 97 1_555 0.187 -0.686 3.124 -7.019 1.565 37.639 -1.232 -1.118 3.012 2.398 10.759 38.295 35 XX_A85C86:G97G98_XX X 85 ? X 98 ? X 86 ? X 97 ? 1 A C 86 1_555 A G 97 1_555 A A 87 1_555 A U 96 1_555 -0.254 -1.508 3.384 -1.769 14.837 34.264 -4.222 0.175 2.548 23.829 2.841 37.291 36 XX_C86A87:U96G97_XX X 86 ? X 97 ? X 87 ? X 96 ? 1 A A 87 1_555 A U 96 1_555 A G 88 1_555 A C 95 1_555 0.442 -1.508 3.264 4.122 9.166 35.632 -3.552 -0.169 2.835 14.623 -6.576 36.978 37 XX_A87G88:C95U96_XX X 87 ? X 96 ? X 88 ? X 95 ? 1 A G 88 1_555 A C 95 1_555 A U 89 1_555 A A 92 1_555 -1.166 -1.057 3.012 6.109 1.727 81.426 -0.848 1.032 2.915 1.322 -4.676 81.630 38 XX_G88U89:A92C95_XX X 88 ? X 95 ? X 89 ? X 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F2Q _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #