data_6XY1 # _entry.id 6XY1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XY1 pdb_00006xy1 10.2210/pdb6xy1/pdb WWPDB D_1292106488 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XY1 _pdbx_database_status.recvd_initial_deposition_date 2020-01-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Edgell, C.L.' 1 0000-0003-0448-122X 'Savery, N.J.' 2 0000-0002-0803-4075 'Woolfson, D.N.' 3 0000-0002-0394-3202 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 1087 _citation.page_last 1092 _citation.title 'RobustDe Novo-Designed Homotetrameric Coiled Coils.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.0c00082 _citation.pdbx_database_id_PubMed 32133841 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edgell, C.L.' 1 ? primary 'Savery, N.J.' 2 ? primary 'Woolfson, D.N.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6XY1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 53.520 _cell.length_a_esd ? _cell.length_b 53.520 _cell.length_b_esd ? _cell.length_c 50.280 _cell.length_c_esd ? _cell.volume 144021.549 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 4-KE-4 3693.381 4 ? ? ? ? 2 water nat water 18.015 160 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GEIQKQLKEIQKQLKEIQWQLKEIQKQLKG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XGEIQKQLKEIQKQLKEIQWQLKEIQKQLKGX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 GLU n 1 4 ILE n 1 5 GLN n 1 6 LYS n 1 7 GLN n 1 8 LEU n 1 9 LYS n 1 10 GLU n 1 11 ILE n 1 12 GLN n 1 13 LYS n 1 14 GLN n 1 15 LEU n 1 16 LYS n 1 17 GLU n 1 18 ILE n 1 19 GLN n 1 20 TRP n 1 21 GLN n 1 22 LEU n 1 23 LYS n 1 24 GLU n 1 25 ILE n 1 26 GLN n 1 27 LYS n 1 28 GLN n 1 29 LEU n 1 30 LYS n 1 31 GLY n 1 32 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 32 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6XY1 _struct_ref.pdbx_db_accession 6XY1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6XY1 A 1 ? 32 ? 6XY1 0 ? 31 ? 0 31 2 1 6XY1 B 1 ? 32 ? 6XY1 0 ? 101 ? 0 101 3 1 6XY1 C 1 ? 32 ? 6XY1 0 ? 31 ? 0 31 4 1 6XY1 D 1 ? 32 ? 6XY1 0 ? 31 ? 0 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6XY1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.6 M sodium citrate, pH 6.5, supplemented with 25% glycerol for cryo-protection' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9762 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9762 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 11.48 _reflns.entry_id 6XY1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 53.52 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22852 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.53 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 13.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1106 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.992 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 17.26 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6XY1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 53.52 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22824 _refine.ls_number_reflns_R_free 961 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.97 _refine.ls_percent_reflns_R_free 4.21 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1623 _refine.ls_R_factor_R_free 0.1883 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1612 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.43 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.9668 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1318 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 53.52 _refine_hist.number_atoms_solvent 160 _refine_hist.number_atoms_total 1201 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1040 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0057 ? 1065 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.7352 ? 1404 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0329 ? 147 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0034 ? 177 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.5100 ? 468 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.50 1.58 . . 156 3082 100.00 . . . 0.1910 . 0.1587 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.58 1.68 . . 111 3138 100.00 . . . 0.2154 . 0.1528 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.68 1.81 . . 166 3056 100.00 . . . 0.1953 . 0.1576 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.81 1.99 . . 129 3143 100.00 . . . 0.1882 . 0.1587 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.99 2.28 . . 145 3106 100.00 . . . 0.1528 . 0.1461 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.28 2.87 . . 130 3131 100.00 . . . 0.1772 . 0.1641 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.87 53.52 . . 124 3207 99.82 . . . 0.2079 . 0.1702 . . . . . . . . . . . # _struct.entry_id 6XY1 _struct.title 'Crystal structure of a de novo designed parallel four-helix coiled coil, 4-KE-4.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XY1 _struct_keywords.text 'coiled coil, tetramer, parallel, de novo protein' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? GLY A 31 ? GLY A 1 GLY A 30 1 ? 30 HELX_P HELX_P2 AA2 GLY B 2 ? LEU B 29 ? GLY B 1 LEU B 28 1 ? 28 HELX_P HELX_P3 AA3 GLU C 3 ? GLY C 31 ? GLU C 2 GLY C 30 1 ? 29 HELX_P HELX_P4 AA4 GLY D 2 ? GLY D 31 ? GLY D 1 GLY D 30 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? B GLY 31 C ? ? ? 1_555 B NH2 32 N ? ? B GLY 30 B NH2 101 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale4 covale both ? C ACE 1 C ? ? ? 1_555 C GLY 2 N ? ? C ACE 0 C GLY 1 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? D ACE 1 C ? ? ? 1_555 D GLY 2 N ? ? D ACE 0 D GLY 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ACE 0 ? 5 'binding site for Di-peptide ACE B 0 and GLY B 1' AC2 Software B NH2 101 ? 8 'binding site for Di-peptide NH2 B 101 and GLY B 30' AC3 Software C ACE 0 ? 4 'binding site for Di-peptide ACE C 0 and GLY C 1' AC4 Software D ACE 0 ? 7 'binding site for Di-peptide ACE D 0 and GLY D 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU B 3 ? GLU B 2 . ? 1_555 ? 2 AC1 5 ILE B 4 ? ILE B 3 . ? 1_555 ? 3 AC1 5 GLN B 5 ? GLN B 4 . ? 1_555 ? 4 AC1 5 LYS B 6 ? LYS B 5 . ? 1_555 ? 5 AC1 5 LYS B 16 ? LYS B 15 . ? 3_664 ? 6 AC2 8 GLN A 7 ? GLN A 6 . ? 2_565 ? 7 AC2 8 HOH E . ? HOH A 108 . ? 4_455 ? 8 AC2 8 LEU B 29 ? LEU B 28 . ? 1_555 ? 9 AC2 8 LYS B 30 ? LYS B 29 . ? 1_555 ? 10 AC2 8 HOH F . ? HOH B 216 . ? 1_555 ? 11 AC2 8 HOH F . ? HOH B 217 . ? 1_555 ? 12 AC2 8 GLN C 12 ? GLN C 11 . ? 2_565 ? 13 AC2 8 HOH G . ? HOH C 111 . ? 2_565 ? 14 AC3 4 GLU C 3 ? GLU C 2 . ? 1_555 ? 15 AC3 4 ILE C 4 ? ILE C 3 . ? 1_555 ? 16 AC3 4 GLN C 7 ? GLN C 6 . ? 1_555 ? 17 AC3 4 GLN D 5 ? GLN D 4 . ? 1_555 ? 18 AC4 7 LYS B 27 ? LYS B 26 . ? 3_664 ? 19 AC4 7 HOH F . ? HOH B 205 . ? 3_664 ? 20 AC4 7 GLU D 3 ? GLU D 2 . ? 1_555 ? 21 AC4 7 ILE D 4 ? ILE D 3 . ? 1_555 ? 22 AC4 7 GLN D 5 ? GLN D 4 . ? 1_555 ? 23 AC4 7 LYS D 6 ? LYS D 5 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH D 122 . ? 1_555 ? # _atom_sites.entry_id 6XY1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018685 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019889 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 GLN 7 6 6 GLN GLN A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 TRP 20 19 19 TRP TRP A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 NH2 32 31 ? ? ? A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLY 2 1 1 GLY GLY B . n B 1 3 GLU 3 2 2 GLU GLU B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 GLN 5 4 4 GLN GLN B . n B 1 6 LYS 6 5 5 LYS LYS B . n B 1 7 GLN 7 6 6 GLN GLN B . n B 1 8 LEU 8 7 7 LEU LEU B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 GLU 10 9 9 GLU GLU B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 LYS 13 12 12 LYS LYS B . n B 1 14 GLN 14 13 13 GLN GLN B . n B 1 15 LEU 15 14 14 LEU LEU B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 ILE 18 17 17 ILE ILE B . n B 1 19 GLN 19 18 18 GLN GLN B . n B 1 20 TRP 20 19 19 TRP TRP B . n B 1 21 GLN 21 20 20 GLN GLN B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 LYS 23 22 22 LYS LYS B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 ILE 25 24 24 ILE ILE B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 LYS 27 26 26 LYS LYS B . n B 1 28 GLN 28 27 27 GLN GLN B . n B 1 29 LEU 29 28 28 LEU LEU B . n B 1 30 LYS 30 29 29 LYS LYS B . n B 1 31 GLY 31 30 30 GLY GLY B . n B 1 32 NH2 32 101 31 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLY 2 1 1 GLY GLY C . n C 1 3 GLU 3 2 2 GLU GLU C . n C 1 4 ILE 4 3 3 ILE ILE C . n C 1 5 GLN 5 4 4 GLN GLN C . n C 1 6 LYS 6 5 5 LYS LYS C . n C 1 7 GLN 7 6 6 GLN GLN C . n C 1 8 LEU 8 7 7 LEU LEU C . n C 1 9 LYS 9 8 8 LYS LYS C . n C 1 10 GLU 10 9 9 GLU GLU C . n C 1 11 ILE 11 10 10 ILE ILE C . n C 1 12 GLN 12 11 11 GLN GLN C . n C 1 13 LYS 13 12 12 LYS LYS C . n C 1 14 GLN 14 13 13 GLN GLN C . n C 1 15 LEU 15 14 14 LEU LEU C . n C 1 16 LYS 16 15 15 LYS LYS C . n C 1 17 GLU 17 16 16 GLU GLU C . n C 1 18 ILE 18 17 17 ILE ILE C . n C 1 19 GLN 19 18 18 GLN GLN C . n C 1 20 TRP 20 19 19 TRP TRP C . n C 1 21 GLN 21 20 20 GLN GLN C . n C 1 22 LEU 22 21 21 LEU LEU C . n C 1 23 LYS 23 22 22 LYS LYS C . n C 1 24 GLU 24 23 23 GLU GLU C . n C 1 25 ILE 25 24 24 ILE ILE C . n C 1 26 GLN 26 25 25 GLN GLN C . n C 1 27 LYS 27 26 26 LYS LYS C . n C 1 28 GLN 28 27 27 GLN GLN C . n C 1 29 LEU 29 28 28 LEU LEU C . n C 1 30 LYS 30 29 29 LYS LYS C . n C 1 31 GLY 31 30 30 GLY GLY C . n C 1 32 NH2 32 31 ? ? ? C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 GLY 2 1 1 GLY GLY D . n D 1 3 GLU 3 2 2 GLU GLU D . n D 1 4 ILE 4 3 3 ILE ILE D . n D 1 5 GLN 5 4 4 GLN GLN D . n D 1 6 LYS 6 5 5 LYS LYS D . n D 1 7 GLN 7 6 6 GLN GLN D . n D 1 8 LEU 8 7 7 LEU LEU D . n D 1 9 LYS 9 8 8 LYS LYS D . n D 1 10 GLU 10 9 9 GLU GLU D . n D 1 11 ILE 11 10 10 ILE ILE D . n D 1 12 GLN 12 11 11 GLN GLN D . n D 1 13 LYS 13 12 12 LYS LYS D . n D 1 14 GLN 14 13 13 GLN GLN D . n D 1 15 LEU 15 14 14 LEU LEU D . n D 1 16 LYS 16 15 15 LYS LYS D . n D 1 17 GLU 17 16 16 GLU GLU D . n D 1 18 ILE 18 17 17 ILE ILE D . n D 1 19 GLN 19 18 18 GLN GLN D . n D 1 20 TRP 20 19 19 TRP TRP D . n D 1 21 GLN 21 20 20 GLN GLN D . n D 1 22 LEU 22 21 21 LEU LEU D . n D 1 23 LYS 23 22 22 LYS LYS D . n D 1 24 GLU 24 23 23 GLU GLU D . n D 1 25 ILE 25 24 24 ILE ILE D . n D 1 26 GLN 26 25 25 GLN GLN D . n D 1 27 LYS 27 26 26 LYS LYS D . n D 1 28 GLN 28 27 27 GLN GLN D . n D 1 29 LEU 29 28 28 LEU LEU D . n D 1 30 LYS 30 29 29 LYS LYS D . n D 1 31 GLY 31 30 30 GLY GLY D . n D 1 32 NH2 32 31 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 94 HOH HOH A . E 2 HOH 2 102 52 HOH HOH A . E 2 HOH 3 103 149 HOH HOH A . E 2 HOH 4 104 100 HOH HOH A . E 2 HOH 5 105 126 HOH HOH A . E 2 HOH 6 106 119 HOH HOH A . E 2 HOH 7 107 142 HOH HOH A . E 2 HOH 8 108 46 HOH HOH A . E 2 HOH 9 109 10 HOH HOH A . E 2 HOH 10 110 30 HOH HOH A . E 2 HOH 11 111 7 HOH HOH A . E 2 HOH 12 112 102 HOH HOH A . E 2 HOH 13 113 48 HOH HOH A . E 2 HOH 14 114 4 HOH HOH A . E 2 HOH 15 115 19 HOH HOH A . E 2 HOH 16 116 133 HOH HOH A . E 2 HOH 17 117 86 HOH HOH A . E 2 HOH 18 118 56 HOH HOH A . E 2 HOH 19 119 114 HOH HOH A . E 2 HOH 20 120 18 HOH HOH A . E 2 HOH 21 121 53 HOH HOH A . E 2 HOH 22 122 22 HOH HOH A . E 2 HOH 23 123 49 HOH HOH A . E 2 HOH 24 124 147 HOH HOH A . E 2 HOH 25 125 83 HOH HOH A . E 2 HOH 26 126 54 HOH HOH A . E 2 HOH 27 127 123 HOH HOH A . E 2 HOH 28 128 3 HOH HOH A . E 2 HOH 29 129 14 HOH HOH A . E 2 HOH 30 130 50 HOH HOH A . E 2 HOH 31 131 8 HOH HOH A . E 2 HOH 32 132 95 HOH HOH A . E 2 HOH 33 133 21 HOH HOH A . E 2 HOH 34 134 91 HOH HOH A . E 2 HOH 35 135 20 HOH HOH A . E 2 HOH 36 136 157 HOH HOH A . E 2 HOH 37 137 159 HOH HOH A . E 2 HOH 38 138 61 HOH HOH A . E 2 HOH 39 139 120 HOH HOH A . E 2 HOH 40 140 156 HOH HOH A . E 2 HOH 41 141 11 HOH HOH A . E 2 HOH 42 142 17 HOH HOH A . E 2 HOH 43 143 145 HOH HOH A . E 2 HOH 44 144 107 HOH HOH A . E 2 HOH 45 145 55 HOH HOH A . E 2 HOH 46 146 79 HOH HOH A . E 2 HOH 47 147 80 HOH HOH A . E 2 HOH 48 148 122 HOH HOH A . E 2 HOH 49 149 62 HOH HOH A . E 2 HOH 50 150 97 HOH HOH A . E 2 HOH 51 151 106 HOH HOH A . E 2 HOH 52 152 158 HOH HOH A . F 2 HOH 1 201 131 HOH HOH B . F 2 HOH 2 202 130 HOH HOH B . F 2 HOH 3 203 15 HOH HOH B . F 2 HOH 4 204 37 HOH HOH B . F 2 HOH 5 205 33 HOH HOH B . F 2 HOH 6 206 16 HOH HOH B . F 2 HOH 7 207 51 HOH HOH B . F 2 HOH 8 208 111 HOH HOH B . F 2 HOH 9 209 2 HOH HOH B . F 2 HOH 10 210 42 HOH HOH B . F 2 HOH 11 211 31 HOH HOH B . F 2 HOH 12 212 12 HOH HOH B . F 2 HOH 13 213 1 HOH HOH B . F 2 HOH 14 214 36 HOH HOH B . F 2 HOH 15 215 32 HOH HOH B . F 2 HOH 16 216 9 HOH HOH B . F 2 HOH 17 217 47 HOH HOH B . F 2 HOH 18 218 74 HOH HOH B . F 2 HOH 19 219 27 HOH HOH B . F 2 HOH 20 220 34 HOH HOH B . F 2 HOH 21 221 75 HOH HOH B . F 2 HOH 22 222 70 HOH HOH B . F 2 HOH 23 223 110 HOH HOH B . F 2 HOH 24 224 67 HOH HOH B . F 2 HOH 25 225 134 HOH HOH B . F 2 HOH 26 226 144 HOH HOH B . F 2 HOH 27 227 85 HOH HOH B . F 2 HOH 28 228 13 HOH HOH B . F 2 HOH 29 229 139 HOH HOH B . F 2 HOH 30 230 143 HOH HOH B . G 2 HOH 1 101 154 HOH HOH C . G 2 HOH 2 102 84 HOH HOH C . G 2 HOH 3 103 155 HOH HOH C . G 2 HOH 4 104 146 HOH HOH C . G 2 HOH 5 105 26 HOH HOH C . G 2 HOH 6 106 5 HOH HOH C . G 2 HOH 7 107 127 HOH HOH C . G 2 HOH 8 108 57 HOH HOH C . G 2 HOH 9 109 104 HOH HOH C . G 2 HOH 10 110 38 HOH HOH C . G 2 HOH 11 111 6 HOH HOH C . G 2 HOH 12 112 35 HOH HOH C . G 2 HOH 13 113 73 HOH HOH C . G 2 HOH 14 114 99 HOH HOH C . G 2 HOH 15 115 151 HOH HOH C . G 2 HOH 16 116 29 HOH HOH C . G 2 HOH 17 117 90 HOH HOH C . G 2 HOH 18 118 24 HOH HOH C . G 2 HOH 19 119 124 HOH HOH C . G 2 HOH 20 120 45 HOH HOH C . G 2 HOH 21 121 68 HOH HOH C . G 2 HOH 22 122 64 HOH HOH C . G 2 HOH 23 123 81 HOH HOH C . G 2 HOH 24 124 66 HOH HOH C . G 2 HOH 25 125 65 HOH HOH C . G 2 HOH 26 126 63 HOH HOH C . G 2 HOH 27 127 77 HOH HOH C . G 2 HOH 28 128 132 HOH HOH C . G 2 HOH 29 129 152 HOH HOH C . G 2 HOH 30 130 89 HOH HOH C . G 2 HOH 31 131 96 HOH HOH C . G 2 HOH 32 132 101 HOH HOH C . G 2 HOH 33 133 98 HOH HOH C . G 2 HOH 34 134 58 HOH HOH C . G 2 HOH 35 135 129 HOH HOH C . G 2 HOH 36 136 82 HOH HOH C . G 2 HOH 37 137 113 HOH HOH C . G 2 HOH 38 138 78 HOH HOH C . G 2 HOH 39 139 72 HOH HOH C . H 2 HOH 1 101 71 HOH HOH D . H 2 HOH 2 102 160 HOH HOH D . H 2 HOH 3 103 43 HOH HOH D . H 2 HOH 4 104 135 HOH HOH D . H 2 HOH 5 105 108 HOH HOH D . H 2 HOH 6 106 76 HOH HOH D . H 2 HOH 7 107 117 HOH HOH D . H 2 HOH 8 108 128 HOH HOH D . H 2 HOH 9 109 59 HOH HOH D . H 2 HOH 10 110 44 HOH HOH D . H 2 HOH 11 111 118 HOH HOH D . H 2 HOH 12 112 41 HOH HOH D . H 2 HOH 13 113 103 HOH HOH D . H 2 HOH 14 114 137 HOH HOH D . H 2 HOH 15 115 115 HOH HOH D . H 2 HOH 16 116 23 HOH HOH D . H 2 HOH 17 117 138 HOH HOH D . H 2 HOH 18 118 162 HOH HOH D . H 2 HOH 19 119 69 HOH HOH D . H 2 HOH 20 120 136 HOH HOH D . H 2 HOH 21 121 121 HOH HOH D . H 2 HOH 22 122 28 HOH HOH D . H 2 HOH 23 123 60 HOH HOH D . H 2 HOH 24 124 148 HOH HOH D . H 2 HOH 25 125 87 HOH HOH D . H 2 HOH 26 126 116 HOH HOH D . H 2 HOH 27 127 88 HOH HOH D . H 2 HOH 28 128 140 HOH HOH D . H 2 HOH 29 129 105 HOH HOH D . H 2 HOH 30 130 112 HOH HOH D . H 2 HOH 31 131 25 HOH HOH D . H 2 HOH 32 132 109 HOH HOH D . H 2 HOH 33 133 125 HOH HOH D . H 2 HOH 34 134 39 HOH HOH D . H 2 HOH 35 135 150 HOH HOH D . H 2 HOH 36 136 92 HOH HOH D . H 2 HOH 37 137 153 HOH HOH D . H 2 HOH 38 138 40 HOH HOH D . H 2 HOH 39 139 161 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6050 ? 1 MORE -39 ? 1 'SSA (A^2)' 7920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-03-18 2 'Structure model' 1 1 2020-03-25 3 'Structure model' 2 0 2022-04-20 4 'Structure model' 2 1 2023-03-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' database_2 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_nonpoly_scheme 8 3 'Structure model' pdbx_poly_seq_scheme 9 3 'Structure model' pdbx_struct_assembly_gen 10 3 'Structure model' pdbx_unobs_or_zero_occ_residues 11 3 'Structure model' struct_asym 12 3 'Structure model' struct_conn 13 3 'Structure model' struct_ref_seq 14 3 'Structure model' struct_site_gen 15 4 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_atom_site.B_iso_or_equiv' 6 3 'Structure model' '_atom_site.Cartn_x' 7 3 'Structure model' '_atom_site.Cartn_y' 8 3 'Structure model' '_atom_site.Cartn_z' 9 3 'Structure model' '_atom_site.auth_asym_id' 10 3 'Structure model' '_atom_site.auth_atom_id' 11 3 'Structure model' '_atom_site.auth_comp_id' 12 3 'Structure model' '_atom_site.auth_seq_id' 13 3 'Structure model' '_atom_site.group_PDB' 14 3 'Structure model' '_atom_site.label_asym_id' 15 3 'Structure model' '_atom_site.label_atom_id' 16 3 'Structure model' '_atom_site.label_comp_id' 17 3 'Structure model' '_atom_site.label_entity_id' 18 3 'Structure model' '_atom_site.label_seq_id' 19 3 'Structure model' '_atom_site.type_symbol' 20 3 'Structure model' '_database_2.pdbx_DOI' 21 3 'Structure model' '_database_2.pdbx_database_accession' 22 3 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 23 3 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 24 3 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 25 3 'Structure model' '_pdbx_poly_seq_scheme.pdb_seq_num' 26 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 3 'Structure model' '_struct_ref_seq.db_align_end' 30 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 31 3 'Structure model' '_struct_site_gen.label_asym_id' 32 4 'Structure model' '_struct.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z+3/4 3 y,-x,z+1/4 4 -x,-y,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16-3546 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 7.2.2 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.7.0 4 # _pdbx_entry_details.entry_id 6XY1 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 103 ? ? O A HOH 137 ? ? 1.83 2 1 O C HOH 126 ? ? O C HOH 139 ? ? 1.91 3 1 O D HOH 123 ? ? O D HOH 124 ? ? 1.99 4 1 O A HOH 124 ? ? O A HOH 140 ? ? 2.07 5 1 NE2 D GLN 11 ? ? O D HOH 101 ? ? 2.07 6 1 O C HOH 101 ? ? O C HOH 124 ? ? 2.08 7 1 OE1 D GLN 11 ? ? O D HOH 102 ? ? 2.12 8 1 OE2 D GLU 23 ? ? O D HOH 103 ? ? 2.14 9 1 NZ A LYS 22 ? ? O A HOH 101 ? ? 2.16 10 1 NE2 C GLN 13 ? ? O D HOH 102 ? ? 2.16 11 1 O C HOH 113 ? ? O D HOH 137 ? ? 2.17 12 1 OE2 C GLU 23 ? ? O C HOH 101 ? ? 2.17 13 1 O C HOH 128 ? ? O C HOH 130 ? ? 2.17 14 1 O A HOH 125 ? ? O A HOH 134 ? ? 2.18 15 1 O A HOH 102 ? ? O A HOH 140 ? ? 2.18 16 1 OE1 A GLU 16 ? ? O A HOH 102 ? ? 2.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A NH2 31 ? A NH2 32 2 1 Y 1 C NH2 31 ? C NH2 32 3 1 Y 1 D NH2 31 ? D NH2 32 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/S002820/1 1 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' EP/L016494/1 2 'Engineering and Physical Sciences Research Council' 'United Kingdom' EP/L016494/1 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 43' _space_group.name_Hall 'P 4cw' _space_group.IT_number 78 _space_group.crystal_system tetragonal _space_group.id 1 #