HEADER TRANSFERASE 06-FEB-20 6Y05 TITLE CRYSTAL STRUCTURE OF THE CAMP-DEPENDENT PROTEIN KINASE A TITLE 2 COCRYSTALLIZED WITH ADENINE AND PKI (5-24) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 11 MUSCLE/BRAIN ISOFORM; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS PHOSPHOTRANSFERASE, SIGNALLING PATHWAYS, GLYCOGEN METABOLISM, KEYWDS 2 SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OEBBEKE,B.WIENEN-SCHMIDT,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6Y05 1 REMARK REVDAT 1 17-FEB-21 6Y05 0 JRNL AUTH M.OEBBEKE,B.WIENEN-SCHMIDT,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BASED DRUG DESIGN - SMALL CHEMICAL CHANGES OF JRNL TITL 2 FRAGMENTS EFFECTING BIG CHANGES IN BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9200 - 4.4400 1.00 2822 149 0.1754 0.1897 REMARK 3 2 4.4400 - 3.5300 1.00 2689 142 0.1521 0.1769 REMARK 3 3 3.5300 - 3.0800 1.00 2675 140 0.1790 0.1973 REMARK 3 4 3.0800 - 2.8000 1.00 2642 140 0.1845 0.2223 REMARK 3 5 2.8000 - 2.6000 1.00 2632 138 0.1889 0.2034 REMARK 3 6 2.6000 - 2.4500 1.00 2639 139 0.1769 0.2107 REMARK 3 7 2.4500 - 2.3200 1.00 2629 138 0.1722 0.2187 REMARK 3 8 2.3200 - 2.2200 1.00 2609 138 0.1743 0.2094 REMARK 3 9 2.2200 - 2.1400 1.00 2595 136 0.1764 0.2125 REMARK 3 10 2.1400 - 2.0600 1.00 2638 139 0.1770 0.2386 REMARK 3 11 2.0600 - 2.0000 1.00 2625 138 0.1859 0.2306 REMARK 3 12 2.0000 - 1.9400 1.00 2577 136 0.1840 0.2202 REMARK 3 13 1.9400 - 1.8900 1.00 2619 138 0.1800 0.2176 REMARK 3 14 1.8900 - 1.8400 1.00 2595 136 0.1885 0.2013 REMARK 3 15 1.8400 - 1.8000 1.00 2594 137 0.1900 0.2220 REMARK 3 16 1.8000 - 1.7600 1.00 2590 136 0.1900 0.2326 REMARK 3 17 1.7600 - 1.7300 1.00 2601 137 0.2029 0.2021 REMARK 3 18 1.7300 - 1.7000 0.89 2304 124 0.2383 0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.154 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.997 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3106 REMARK 3 ANGLE : 0.816 4232 REMARK 3 CHIRALITY : 0.054 452 REMARK 3 PLANARITY : 0.006 557 REMARK 3 DIHEDRAL : 18.779 1833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1084 8.3115 -9.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.2370 REMARK 3 T33: 0.2082 T12: 0.0226 REMARK 3 T13: -0.0166 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5560 L22: 0.4019 REMARK 3 L33: 1.1406 L12: -0.2648 REMARK 3 L13: -0.0426 L23: -0.5438 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0422 S13: -0.0459 REMARK 3 S21: -0.1008 S22: 0.0628 S23: 0.1508 REMARK 3 S31: 0.1120 S32: -0.2174 S33: 0.0176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9194 19.4718 0.1774 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1898 REMARK 3 T33: 0.1708 T12: 0.0193 REMARK 3 T13: -0.0144 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.1555 L22: 0.8544 REMARK 3 L33: 0.9542 L12: -0.2832 REMARK 3 L13: 0.0253 L23: -0.3420 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: -0.1946 S13: 0.0640 REMARK 3 S21: 0.1609 S22: 0.1329 S23: 0.0429 REMARK 3 S31: -0.2576 S32: 0.0123 S33: -0.2040 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6403 4.3351 -2.1974 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1545 REMARK 3 T33: 0.1567 T12: -0.0047 REMARK 3 T13: 0.0045 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4288 L22: 0.2923 REMARK 3 L33: 1.1481 L12: -0.3005 REMARK 3 L13: 0.0832 L23: -0.2684 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.0299 S13: 0.0014 REMARK 3 S21: -0.0194 S22: 0.0497 S23: 0.0825 REMARK 3 S31: 0.1244 S32: -0.1318 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8977 -2.8935 -3.9047 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.1557 REMARK 3 T33: 0.1285 T12: 0.0573 REMARK 3 T13: 0.0293 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5591 L22: 0.7611 REMARK 3 L33: 0.9894 L12: -0.0908 REMARK 3 L13: 0.3387 L23: -0.5833 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.0566 S13: -0.0571 REMARK 3 S21: -0.1359 S22: -0.0828 S23: -0.0247 REMARK 3 S31: 0.3858 S32: 0.1580 S33: 0.0251 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0366 -3.2474 -0.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.1262 REMARK 3 T33: 0.1476 T12: -0.0151 REMARK 3 T13: 0.0220 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6894 L22: 0.9121 REMARK 3 L33: 1.7278 L12: -0.3714 REMARK 3 L13: 0.0889 L23: -0.2407 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0317 S13: -0.1237 REMARK 3 S21: -0.0417 S22: 0.0688 S23: 0.0581 REMARK 3 S31: 0.4187 S32: -0.0647 S33: 0.0238 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9609 -8.1349 16.1775 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.2173 REMARK 3 T33: 0.1582 T12: 0.0614 REMARK 3 T13: 0.0205 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0098 L22: 0.0148 REMARK 3 L33: 0.0106 L12: 0.0073 REMARK 3 L13: 0.0096 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0585 S13: 0.1252 REMARK 3 S21: 0.2047 S22: -0.2821 S23: 0.2233 REMARK 3 S31: 0.0096 S32: 0.0280 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6114 2.7446 7.0742 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.2104 REMARK 3 T33: 0.1639 T12: 0.0607 REMARK 3 T13: -0.0171 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0588 L22: 0.0343 REMARK 3 L33: 0.0144 L12: 0.0024 REMARK 3 L13: -0.0079 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.1659 S13: 0.0661 REMARK 3 S21: 0.1201 S22: -0.0317 S23: 0.0121 REMARK 3 S31: -0.0186 S32: 0.1047 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.696 REMARK 200 RESOLUTION RANGE LOW (A) : 43.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 22.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 FOR SHELL : 3.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS-BUFFER, 1 MM REMARK 280 DITHIOTHREITOL, 0.1 MM SODIUM EDTA, 75 MM LICL, 0.2 MEGA 8, 10MM REMARK 280 ADENINE IN DMSO, 0.5 MM PKI (5-24) AND 23 % METHANOL (V/V)0.004 REMARK 280 ML DROP VOLUME, 0.5 ML RESERVOIR VOLUME, PH 6.9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.46300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.39600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.39600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.46300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 HIS B 23 REMARK 465 ASP B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 SER A 10 OG REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 GLN A 12 CD OE1 NE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 28 CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 81 NZ REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 ARG A 134 CZ NH1 NH2 REMARK 470 ILE A 135 CD1 REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 LYS A 192 NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ILE A 244 CG1 CD1 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CE NZ REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 309 CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 339 CD1 REMARK 470 LYS A 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 103.29 -161.91 REMARK 500 ASP A 166 42.81 -148.39 REMARK 500 ASP A 184 98.08 60.39 REMARK 500 ASP A 184 79.14 76.75 REMARK 500 ASN A 216 -156.73 -141.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD B 101 DBREF 6Y05 A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 6Y05 B 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 6Y05 GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6Y05 HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 6Y05 TPO A 197 THR MODIFIED RESIDUE MODRES 6Y05 SEP A 338 SER MODIFIED RESIDUE HET TPO A 197 11 HET SEP A 338 10 HET ADE A 401 10 HET MRD A 402 8 HET MPD A 403 8 HET MRD B 101 8 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ADE ADENINE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 ADE C5 H5 N5 FORMUL 4 MRD 2(C6 H14 O2) FORMUL 5 MPD C6 H14 O2 FORMUL 7 HOH *299(H2 O) HELIX 1 AA1 GLY A 9 SER A 32 1 24 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 GLN A 96 1 13 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SER A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR B 6 ALA B 12 1 7 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C ATRP A 196 N TPO A 197 1555 1555 1.33 LINK C BTRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 9 ALA A 70 MET A 120 GLU A 121 VAL A 123 SITE 2 AC1 9 LEU A 173 THR A 183 PHE A 327 HOH A 512 SITE 3 AC1 9 HOH A 559 SITE 1 AC2 5 VAL A 15 LEU A 152 GLU A 155 LYS A 292 SITE 2 AC2 5 TYR A 306 SITE 1 AC3 5 ARG A 134 TRP A 196 ASN A 326 PHE A 327 SITE 2 AC3 5 ASP A 328 SITE 1 AC4 4 GLU A 86 GLY A 136 ARG A 137 HOH A 605 CRYST1 72.926 75.122 80.792 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012377 0.00000